Rh6DG103400

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002128
Physical Location & Seq
Forward (+)
13025776 .. 13028240
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG103400.1

Sequence Viewer

Length: 828 bp
ATGAATCTAGGGGAAGCTGAGGACGACGGGGATGGCAAGGATGCAAGATATGAAGACTTCTTTGGGAAAAAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGTGGGGAGAGGTAACTGCAACAAAAAGGCCACCGAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAGGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGCAAGAGTATCTTCAAAAGATGAATGCAGATTCTGGCCCGTTGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATGCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTCTTTCTCATTTCCACTTCACTCCAAAACCCGTTATTGAGGATATGTCTATACAAGATAATGTCCCTGCTCTAGTTATGGAAGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCGGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATCGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

275

Amino Acids

31.43

Weight (kDa)

5.56

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 18 - 256 4e-80 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 294
AciI CCGC 3 cut(s) 246, 632, 716
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 156
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 230, 332, 437, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 4 cut(s) 17, 656, 737, 761
AluI AGCT 4 cut(s) 17, 656, 737, 761
Alw26I GTCTC 2 cut(s) 640, 789
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 2 cut(s) 100, 455
Aor13HI TCCGGA 1 cut(s) 294
AoxI GGCC 2 cut(s) 191, 457
ApeKI GCWGC 2 cut(s) 94, 644
ApoI RAATTY 1 cut(s) 752
AspS9I GGNCC 3 cut(s) 145, 159, 458
AsuHPI GGTGA 1 cut(s) 695
AsuNHI GCTAGC 1 cut(s) 652
AvaII GGWCC 2 cut(s) 145, 159
AxyI CCTNAGG 1 cut(s) 660
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 340
BauI CACGAG 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 106, 656
BccI CCATC 3 cut(s) 26, 373, 772
BcoDI GTCTC 2 cut(s) 640, 789
BfaI CTAG 4 cut(s) 8, 221, 605, 653
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 95, 645
BlsI GCNGC 2 cut(s) 96, 646
Bme18I GGWCC 2 cut(s) 145, 159
BmgT120I GGNCC 3 cut(s) 145, 159, 458
BmiI GGNNCC 3 cut(s) 147, 339, 360
BmsI GCATC 4 cut(s) 31, 520, 631, 822
BmtI GCTAGC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 294
BseGI GGATG 6 cut(s) 37, 46, 388, 467, 535, 783
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 2 cut(s) 9, 651
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 278, 745
BseXI GCAGC 2 cut(s) 106, 656
BshFI GGCC 2 cut(s) 193, 459
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 640, 789
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 2 cut(s) 193, 459
Bso31I GGTCTC 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 294
Bsp143I GATC 3 cut(s) 217, 255, 291
BspACI CCGC 3 cut(s) 246, 632, 716
BspANI GGCC 2 cut(s) 193, 459
BspCNI CTCAG 2 cut(s) 10, 652
BspEI TCCGGA 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 147, 339, 360
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 358
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 1 cut(s) 411
BssMI GATC 3 cut(s) 217, 255, 291
BssSI CACGAG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 203, 274
Bst6I CTCTTC 1 cut(s) 609
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 3 cut(s) 18, 354, 660
BstF5I GGATG 6 cut(s) 37, 46, 388, 467, 535, 783
BstKTI GATC 3 cut(s) 220, 258, 294
BstMAI GTCTC 2 cut(s) 640, 789
BstMBI GATC 3 cut(s) 217, 255, 291
BstMWI GCNNNNNNNGC 3 cut(s) 629, 653, 767
BstV1I GCAGC 2 cut(s) 106, 656
BstV2I GAAGAC 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 2 cut(s) 193, 459
BtsCI GGATG 6 cut(s) 37, 46, 388, 467, 535, 783
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 2 cut(s) 100, 455
Cfr13I GGNCC 3 cut(s) 145, 159, 458
CviAII CATG 2 cut(s) 86, 163
DdeI CTNAG 3 cut(s) 18, 354, 660
DpnI GATC 3 cut(s) 219, 257, 293
DpnII GATC 3 cut(s) 217, 255, 291
DraI TTTAAA 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
EciI GGCGGA 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 145, 159
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 2 cut(s) 89, 166
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 690, 722
FaqI GGGAC 1 cut(s) 581
FatI CATG 2 cut(s) 85, 162
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 824
Fnu4HI GCNGC 2 cut(s) 95, 645
FokI GGATG 6 cut(s) 44, 53, 395, 454, 542, 790
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 95, 645
FspBI CTAG 4 cut(s) 8, 221, 605, 653
GluI GCNGC 2 cut(s) 95, 645
HaeIII GGCC 2 cut(s) 193, 459
HapII CCGG 1 cut(s) 295
Hin1II CATG 2 cut(s) 89, 166
HinfI GANTC 2 cut(s) 4, 452
HpaII CCGG 1 cut(s) 295
HphI GGTGA 1 cut(s) 695
Hpy188I TCNGA 3 cut(s) 115, 255, 640
Hpy188III TCNNGA 4 cut(s) 221, 295, 508, 659
Hpy99I CGWCG 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 203, 274
HpyCH4V TGCA 5 cut(s) 44, 182, 449, 623, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 629, 653, 767
HpyF3I CTNAG 3 cut(s) 18, 354, 660
Hsp92II CATG 2 cut(s) 89, 166
Kpn2I TCCGGA 1 cut(s) 294
Kzo9I GATC 3 cut(s) 217, 255, 291
LmnI GCTCC 2 cut(s) 343, 661
Lsp1109I GCAGC 2 cut(s) 106, 656
LweI GCATC 4 cut(s) 31, 520, 631, 822
MaeI CTAG 4 cut(s) 8, 221, 605, 653
MaeIII GTNAC 3 cut(s) 175, 268, 763
MalI GATC 3 cut(s) 219, 257, 293
MboI GATC 3 cut(s) 217, 255, 291
MboII GAAGA 6 cut(s) 65, 425, 425, 496, 626, 707
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 1 cut(s) 752
MmeI TCCRAC 1 cut(s) 507
MroI TCCGGA 1 cut(s) 294
MseI TTAA 3 cut(s) 108, 690, 756
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 629, 653, 767
NdeI CATATG 1 cut(s) 824
NdeII GATC 3 cut(s) 217, 255, 291
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 2 cut(s) 89, 166
NlaIV GGNNCC 3 cut(s) 147, 339, 360
NmuCI GTSAC 1 cut(s) 763
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 4, 452
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 2 cut(s) 96, 646
PspN4I GGNNCC 3 cut(s) 147, 339, 360
PspPI GGNCC 3 cut(s) 145, 159, 458
PstNI CAGNNNCTG 2 cut(s) 100, 455
SaqAI TTAA 3 cut(s) 108, 690, 756
SatI GCNGC 2 cut(s) 95, 645
Sau3AI GATC 3 cut(s) 217, 255, 291
Sau96I GGNCC 3 cut(s) 145, 159, 458
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 19, 177, 270, 352, 628, 658, 685, 739, 763
SfaNI GCATC 4 cut(s) 31, 520, 631, 822
SinI GGWCC 2 cut(s) 145, 159
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 752
SsiI CCGC 3 cut(s) 246, 632, 716
SspMI CTAG 4 cut(s) 8, 221, 605, 653
TaaI ACNGT 2 cut(s) 203, 274
TaqI TCGA 1 cut(s) 816
TasI AATT 1 cut(s) 752
TfiI GAWTC 2 cut(s) 4, 452
Tru1I TTAA 3 cut(s) 108, 690, 756
Tru9I TTAA 3 cut(s) 108, 690, 756
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 2 cut(s) 94, 644
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 4 cut(s) 17, 66, 102, 458
TspRI CASTG 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 145, 159
XapI RAATTY 1 cut(s) 752
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 4 cut(s) 8, 221, 605, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.