AT5G66540

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002128
Physical Location & Seq
Reverse (-)
26556275 .. 26559452
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66540.1

Sequence Viewer

Length: 1575 bp
ATGGCTACGGTAAAGGATTCGGGGTTTGAAGCCCTTGAGAAGCTTAAGGCAACAGAGCCACCAGTTTTTCTAGCGCCAAGTTCAATATCTGAGGATGCTCGCTCTGCATCTCAGTATCTATTCATGAAGTTGAAGCCGCATAACCCTAAATGTCCATTTGATCAGCTCTCTTCTGATGGGTTTGATGCGGAGCAGATTTGGCAGCAAATTGATATGCAATCTCAACCTTTGTTGACTAGCTTGCGGCAGGAAGTCAAGAGATTTGCTAAAAACCCTGAAGAGATTCGTAAACTTGGGAAGTTGGCCCTTAAGGTTTCTCATGAAGATGATATTGATGAGATGGATATGGATGGTTTTGACTCGGATGATGTTGATGATGAGGATAAAGAGATAGAATCTAATGACAGCGAAGGAGAAGATGAAGAGGAAGAGGAAGAGGACGAGGAAGAAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGAAGGATGGAGACAATGAAGGAATAGAGGATAAGTTCTTCAAGATAAAAGAATTGGAGGAATTTTTAGAGGAAGGTGAAGCAGAAGAGTATGGGATAGACCACAAAAACAAAAAAGGAGTGGCACAGAGAAAGAAGCAAAATTTGAGCGATGATGAAGACGAAGAAGATGATGATGATGAAGAAGAAGATGTTGAGTTTGATGCTTTTGCTGGTGGTGACGACGAAGAGACAGATAAATTAGGAAAAGCAAGGTATGATGATTTCTTTGGTGGCAAAAAGGAGACAAAAATGAAGTTGAAAGATTTGAGTGAAGATGAGGAAGCTGAAATAGAAAACAAAGGCAATGAAAAACTCTCTACCCATGAGAGAGCACGACTAAAGCTTCAATCCAAGATTGAACAGATGGAGAAAGCAAACTTGGACCCAAAACATTGGACAATGCAGGGAGAGATAACTGCGGCAAAGAGGCCAATGAATAGTGCTCTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGGCCTGCTCCTGTAATCACAGAAGAAGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGAATCATTGAGGCTCGTTTCGATGATGTTCAACGAGCACCTCGTCTACCCACTAAAGGAAAAAGAGAAGCCAAGGAATTGGACGAAAGCAAAAGCAAGAAAGGTCTTGCCGAAGTTTACGAGGCAGAATACTTTCAGAAGGCTAATCCAGCTTTTGCCCCAACAACTCACTCTGATGAACTAAAGAAAGAGGCAAGCATGTTGTTCAAGAAACTATGCCTGAAGTTGGATGCTCTCTCCCACTTCCACTTCACACCTAAACCAGTGATTGAAGAAATGTCTATACCAAACGTTTCAGCCATAGCAATGGAAGAGGTTGCGCCCGTGGCCGTCTCAGATGCAGCAATGCTTGCCCCAGAGGAAATATTTTCCGGGAAAGGTGACATTAAGGATGAGTCTGAGCTCACACAGGAAGATAGAAAGAGGAGGAGAGCGAATAAGAAGAGAAAGTTTAAGGCTGAATCTGCAAATGAACCGCCTAAAAAGGCGCTGGATACAAGTACCAAGAACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

524

Amino Acids

59.74

Weight (kDa)

4.5

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 48 - 509 9.3e-103 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1105
AciI CCGC 5 cut(s) 137, 188, 244, 941, 1535
AclI AACGTT 1 cut(s) 1350
AcoI YGGCCR 1 cut(s) 1386
AcsI RAATTY 2 cut(s) 542, 622
AcuI CTGAAG 2 cut(s) 297, 1301
AfaI GTAC 1 cut(s) 1561
AfiI CCNNNNNNNGG 2 cut(s) 1115, 1285
AflII CTTAAG 2 cut(s) 44, 308
AjnI CCWGG 1 cut(s) 998
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 7 cut(s) 43, 166, 240, 806, 865, 1211, 1462
AluI AGCT 7 cut(s) 43, 166, 240, 806, 865, 1211, 1462
Alw21I GWGCWC 5 cut(s) 856, 967, 993, 1099, 1464
Alw26I GTCTC 4 cut(s) 486, 704, 758, 1396
AoxI GGCC 4 cut(s) 303, 950, 1001, 1386
ApeKI GCWGC 2 cut(s) 202, 1400
ApoI RAATTY 2 cut(s) 542, 622
Asp700I GAANNNNTTC 2 cut(s) 282, 1191
AspLEI GCGC 3 cut(s) 76, 1381, 1549
AspS9I GGNCC 2 cut(s) 304, 904
AsuC2I CCSGG 1 cut(s) 1432
AsuHPI GGTGA 3 cut(s) 569, 710, 1451
AvaII GGWCC 1 cut(s) 904
BanII GRGCYC 1 cut(s) 1464
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 5 cut(s) 856, 967, 993, 1099, 1464
BbvI GCAGC 2 cut(s) 214, 1412
BccI CCATC 5 cut(s) 170, 334, 344, 482, 880
BceAI ACGGC 1 cut(s) 1373
BciT130I CCWGG 1 cut(s) 1000
BciVI GTATCC 1 cut(s) 1546
BclI TGATCA 2 cut(s) 160, 1050
BcnI CCSGG 1 cut(s) 1432
BcoDI GTCTC 4 cut(s) 486, 704, 758, 1396
BfaI CTAG 3 cut(s) 71, 237, 968
BfoI RGCGCY 2 cut(s) 77, 1550
BfrI CTTAAG 2 cut(s) 44, 308
BfuI GTATCC 1 cut(s) 1546
BisI GCNGC 5 cut(s) 137, 203, 245, 942, 1401
BlsI GCNGC 5 cut(s) 138, 204, 246, 943, 1402
Bme1390I CCNGG 2 cut(s) 1000, 1432
Bme18I GGWCC 1 cut(s) 904
BmgT120I GGNCC 2 cut(s) 304, 904
BmiI GGNNCC 1 cut(s) 906
BmrFI CCNGG 2 cut(s) 1000, 1432
BmsI GCATC 6 cut(s) 85, 116, 175, 673, 1279, 1387
BpiI GAAGAC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 1432
BsaJI CCNNGG 2 cut(s) 1131, 1383
Bsc4I CCNNNNNNNGG 2 cut(s) 1115, 1285
Bse1I ACTGG 2 cut(s) 62, 1322
Bse3DI GCAATG 3 cut(s) 832, 1371, 1410
BseBI CCWGG 1 cut(s) 1000
BseDI CCNNGG 2 cut(s) 1131, 1383
BseGI GGATG 6 cut(s) 100, 355, 370, 493, 1294, 1456
BseLI CCNNNNNNNGG 2 cut(s) 1115, 1285
BseMI GCAATG 3 cut(s) 832, 1371, 1410
BseMII CTCAG 4 cut(s) 81, 125, 1407, 1449
BseNI ACTGG 2 cut(s) 62, 1322
BseRI GAGGAG 9 cut(s) 470, 479, 482, 485, 488, 491, 494, 1498, 1501
BseXI GCAGC 2 cut(s) 214, 1412
BshFI GGCC 4 cut(s) 305, 952, 1003, 1388
BsiHKAI GWGCWC 5 cut(s) 856, 967, 993, 1099, 1464
BsiSI CCGG 1 cut(s) 1431
BslI CCNNNNNNNGG 2 cut(s) 1115, 1285
BsmAI GTCTC 4 cut(s) 486, 704, 758, 1396
BsmBI CGTCTC 1 cut(s) 1396
BsnI GGCC 4 cut(s) 305, 952, 1003, 1388
Bsp1286I GDGCHC 5 cut(s) 856, 967, 993, 1099, 1464
Bsp143I GATC 2 cut(s) 160, 1050
BspACI CCGC 5 cut(s) 137, 188, 244, 941, 1535
BspANI GGCC 4 cut(s) 305, 952, 1003, 1388
BspCNI CTCAG 4 cut(s) 82, 124, 1406, 1450
BspHI TCATGA 2 cut(s) 123, 319
BspLI GGNNCC 1 cut(s) 906
BspTI CTTAAG 2 cut(s) 44, 308
BsrDI GCAATG 3 cut(s) 832, 1371, 1410
BsrI ACTGG 2 cut(s) 62, 1322
BssECI CCNNGG 2 cut(s) 1131, 1383
BssMI GATC 2 cut(s) 160, 1050
BssT1I CCWWGG 1 cut(s) 1131
Bst2UI CCWGG 1 cut(s) 1000
Bst4CI ACNGT 1 cut(s) 10
BstAFI CTTAAG 2 cut(s) 44, 308
BstAPI GCANNNNNTGC 1 cut(s) 1409
BstC8I GCNNGC 5 cut(s) 100, 242, 1005, 1255, 1410
BstDEI CTNAG 4 cut(s) 90, 111, 1393, 1458
BstDSI CCRYGG 1 cut(s) 1383
BstF5I GGATG 6 cut(s) 100, 355, 370, 493, 1294, 1456
BstH2I RGCGCY 2 cut(s) 77, 1550
BstHHI GCGC 3 cut(s) 76, 1381, 1549
BstKTI GATC 2 cut(s) 163, 1053
BstMAI GTCTC 4 cut(s) 486, 704, 758, 1396
BstMBI GATC 2 cut(s) 160, 1050
BstMWI GCNNNNNNNGC 7 cut(s) 104, 199, 1004, 1208, 1385, 1409, 1523
BstNI CCWGG 1 cut(s) 1000
BstNSI RCATGY 1 cut(s) 1261
BstSCI CCNGG 2 cut(s) 998, 1430
BstV1I GCAGC 2 cut(s) 214, 1412
BstV2I GAAGAC 1 cut(s) 645
BstXI CCANNNNNNTGG 3 cut(s) 915, 1138, 1366
BsuI GTATCC 1 cut(s) 1546
BsuRI GGCC 4 cut(s) 305, 952, 1003, 1388
BtgI CCRYGG 1 cut(s) 1383
BtgZI GCGATG 1 cut(s) 645
BtsCI GGATG 6 cut(s) 100, 355, 370, 493, 1294, 1456
BtsIMutI CAGTG 1 cut(s) 1329
Cac8I GCNNGC 5 cut(s) 100, 242, 1005, 1255, 1410
CciI TCATGA 2 cut(s) 123, 319
CfoI GCGC 3 cut(s) 76, 1381, 1549
Cfr13I GGNCC 2 cut(s) 304, 904
Csp6I GTAC 1 cut(s) 1560
CviAII CATG 4 cut(s) 124, 320, 845, 1258
CviQI GTAC 1 cut(s) 1560
DdeI CTNAG 4 cut(s) 90, 111, 1393, 1458
DpnI GATC 2 cut(s) 162, 1052
DpnII GATC 2 cut(s) 160, 1050
EaeI YGGCCR 1 cut(s) 1386
Ecl136II GAGCTC 1 cut(s) 1462
Eco130I CCWWGG 1 cut(s) 1131
Eco147I AGGCCT 1 cut(s) 1003
Eco24I GRGCYC 1 cut(s) 1464
Eco47I GGWCC 1 cut(s) 904
Eco53kI GAGCTC 1 cut(s) 1462
Eco57I CTGAAG 2 cut(s) 297, 1301
EcoICRI GAGCTC 1 cut(s) 1462
EcoRII CCWGG 1 cut(s) 998
EcoT14I CCWWGG 1 cut(s) 1131
EcoT38I GRGCYC 1 cut(s) 1464
ErhI CCWWGG 1 cut(s) 1131
Esp3I CGTCTC 1 cut(s) 1396
FaeI CATG 4 cut(s) 127, 323, 848, 1261
FatI CATG 4 cut(s) 123, 319, 844, 1257
FbaI TGATCA 2 cut(s) 160, 1050
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 5 cut(s) 137, 203, 245, 942, 1401
FokI GGATG 6 cut(s) 107, 362, 377, 500, 1301, 1463
FriOI GRGCYC 1 cut(s) 1464
Fsp4HI GCNGC 5 cut(s) 137, 203, 245, 942, 1401
FspBI CTAG 3 cut(s) 71, 237, 968
GlaI GCGC 3 cut(s) 75, 1380, 1548
GluI GCNGC 5 cut(s) 137, 203, 245, 942, 1401
HaeII RGCGCY 2 cut(s) 77, 1550
HaeIII GGCC 4 cut(s) 305, 952, 1003, 1388
HapII CCGG 1 cut(s) 1431
HhaI GCGC 3 cut(s) 76, 1381, 1549
Hin1II CATG 4 cut(s) 127, 323, 848, 1261
Hin6I GCGC 3 cut(s) 74, 1379, 1547
HinP1I GCGC 3 cut(s) 74, 1379, 1547
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HindIII AAGCTT 2 cut(s) 41, 863
HinfI GANTC 7 cut(s) 17, 283, 359, 395, 1062, 1454, 1520
HpaII CCGG 1 cut(s) 1431
HphI GGTGA 3 cut(s) 569, 710, 1451
Hpy166II GTNNAC 4 cut(s) 234, 290, 1106, 1177
Hpy188I TCNGA 7 cut(s) 91, 175, 364, 1197, 1234, 1396, 1459
Hpy188III TCNNGA 7 cut(s) 124, 256, 320, 523, 968, 1054, 1267
Hpy8I GTNNAC 4 cut(s) 234, 290, 1106, 1177
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 5 cut(s) 404, 478, 494, 548, 1192
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 1350
HpyCH4V TGCA 5 cut(s) 107, 217, 925, 1400, 1526
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 199, 1004, 1208, 1385, 1409, 1523
HpyF3I CTNAG 4 cut(s) 90, 111, 1393, 1458
HpySE526I ACGT 1 cut(s) 1350
Hsp92II CATG 4 cut(s) 127, 323, 848, 1261
HspAI GCGC 3 cut(s) 74, 1379, 1547
Ksp22I TGATCA 2 cut(s) 160, 1050
Kzo9I GATC 2 cut(s) 160, 1050
LmnI GCTCC 2 cut(s) 190, 1012
Lsp1109I GCAGC 2 cut(s) 214, 1412
LweI GCATC 6 cut(s) 85, 116, 175, 673, 1279, 1387
MaeI CTAG 3 cut(s) 71, 237, 968
MaeII ACGT 1 cut(s) 1350
MaeIII GTNAC 3 cut(s) 698, 1027, 1439
MalI GATC 2 cut(s) 162, 1052
MboI GATC 2 cut(s) 160, 1050
MhlI GDGCHC 5 cut(s) 856, 967, 993, 1099, 1464
MluCI AATT 6 cut(s) 207, 533, 542, 622, 719, 1136
MlyI GAGTC 2 cut(s) 353, 1463
MmeI TCCRAC 1 cut(s) 1266
MroXI GAANNNNTTC 2 cut(s) 282, 1191
MseI TTAA 5 cut(s) 45, 309, 1446, 1512, 1573
MslI CAYNNNNRTG 3 cut(s) 324, 1233, 1364
MspCI CTTAAG 2 cut(s) 44, 308
MspI CCGG 1 cut(s) 1431
MspR9I CCNGG 2 cut(s) 1000, 1432
MvaI CCWGG 1 cut(s) 1000
MwoI GCNNNNNNNGC 7 cut(s) 104, 199, 1004, 1208, 1385, 1409, 1523
NciI CCSGG 1 cut(s) 1432
NdeII GATC 2 cut(s) 160, 1050
NlaIII CATG 4 cut(s) 127, 323, 848, 1261
NlaIV GGNNCC 1 cut(s) 906
NmuCI GTSAC 3 cut(s) 698, 1027, 1439
NspI RCATGY 1 cut(s) 1261
PagI TCATGA 2 cut(s) 123, 319
PceI AGGCCT 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 1099
PdmI GAANNNNTTC 2 cut(s) 282, 1191
PfeI GAWTC 5 cut(s) 17, 283, 395, 1062, 1520
PfoI TCCNGGA 1 cut(s) 1430
PkrI GCNGC 5 cut(s) 138, 204, 246, 943, 1402
PleI GAGTC 2 cut(s) 353, 1462
PpsI GAGTC 2 cut(s) 353, 1462
Psp124BI GAGCTC 1 cut(s) 1464
Psp1406I AACGTT 1 cut(s) 1350
Psp6I CCWGG 1 cut(s) 998
PspGI CCWGG 1 cut(s) 998
PspN4I GGNNCC 1 cut(s) 906
PspPI GGNCC 2 cut(s) 304, 904
RsaI GTAC 1 cut(s) 1561
RsaNI GTAC 1 cut(s) 1560
RseI CAYNNNNRTG 3 cut(s) 324, 1233, 1364
SacI GAGCTC 1 cut(s) 1464
SaqAI TTAA 5 cut(s) 45, 309, 1446, 1512, 1573
SatI GCNGC 5 cut(s) 137, 203, 245, 942, 1401
Sau3AI GATC 2 cut(s) 160, 1050
Sau96I GGNCC 2 cut(s) 304, 904
SchI GAGTC 2 cut(s) 353, 1463
ScrFI CCNGG 2 cut(s) 1000, 1432
SduI GDGCHC 5 cut(s) 856, 967, 993, 1099, 1464
SfaNI GCATC 6 cut(s) 85, 116, 175, 673, 1279, 1387
SinI GGWCC 1 cut(s) 904
SmiMI CAYNNNNRTG 3 cut(s) 324, 1233, 1364
SmlI CTYRAG 3 cut(s) 35, 44, 308
SmoI CTYRAG 3 cut(s) 35, 44, 308
Sse9I AATT 6 cut(s) 207, 533, 542, 622, 719, 1136
SseBI AGGCCT 1 cut(s) 1003
SsiI CCGC 5 cut(s) 137, 188, 244, 941, 1535
SspI AATATT 1 cut(s) 1425
SspMI CTAG 3 cut(s) 71, 237, 968
SstI GAGCTC 1 cut(s) 1464
StuI AGGCCT 1 cut(s) 1003
StyD4I CCNGG 2 cut(s) 998, 1430
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 1353
TaqI TCGA 1 cut(s) 1080
TasI AATT 6 cut(s) 207, 533, 542, 622, 719, 1136
TauI GCSGC 3 cut(s) 139, 247, 944
TfiI GAWTC 5 cut(s) 17, 283, 395, 1062, 1520
Tru1I TTAA 5 cut(s) 45, 309, 1446, 1512, 1573
Tru9I TTAA 5 cut(s) 45, 309, 1446, 1512, 1573
TscAI CASTG 1 cut(s) 1329
TseFI GTSAC 3 cut(s) 698, 1027, 1439
TseI GCWGC 2 cut(s) 202, 1400
Tsp45I GTSAC 3 cut(s) 698, 1027, 1439
TspRI CASTG 1 cut(s) 1329
Vha464I CTTAAG 2 cut(s) 44, 308
VpaK11BI GGWCC 1 cut(s) 904
XapI RAATTY 2 cut(s) 542, 622
XbaI TCTAGA 1 cut(s) 967
XceI RCATGY 1 cut(s) 1261
XmiI GTMKAC 1 cut(s) 1105
XmnI GAANNNNTTC 2 cut(s) 282, 1191
XspI CTAG 3 cut(s) 71, 237, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.