Rh6BG115800

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002128
Physical Location & Seq
Reverse (-)
17954438 .. 17954794
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG115800.1

Sequence Viewer

Length: 357 bp
ATGGCGGCCGGTAGCGAAGCTCTGAACTCCGTTAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGATCAGCTCCTGGTGGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGTGGTTGTGGACGGAGAGGAGAAGGTTCTGGAAGCTGAGAAGGAGGAGGGACGGCGAGGAATTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

118

Amino Acids

13.3

Weight (kDa)

6.36

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 16 - 104 1.7e-09 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 240
AciI CCGC 7 cut(s) 5, 96, 218, 235, 238, 250, 269
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 2 cut(s) 62, 177
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 103, 247
AjnI CCWGG 1 cut(s) 159
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 4 cut(s) 20, 157, 283, 323
AluI AGCT 4 cut(s) 20, 157, 283, 323
AlwNI CAGNNNCTG 2 cut(s) 58, 160
Ama87I CYCGRG 2 cut(s) 90, 226
AoxI GGCC 2 cut(s) 6, 125
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 64
AvaI CYCGRG 2 cut(s) 90, 226
BanI GGYRCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 112, 184
BciT130I CCWGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 5 cut(s) 6, 96, 194, 218, 238
BlsI GCNGC 5 cut(s) 7, 97, 195, 219, 239
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 90, 226
BmiI GGNNCC 2 cut(s) 45, 63
BmrFI CCNGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 62, 177
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 8
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 106, 320, 347
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 127
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 90, 226
BsiSI CCGG 2 cut(s) 9, 266
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 2 cut(s) 8, 127
BsoBI CYCGRG 2 cut(s) 90, 226
Bsp143I GATC 2 cut(s) 151, 273
BspACI CCGC 7 cut(s) 5, 96, 218, 235, 238, 250, 269
BspANI GGCC 2 cut(s) 8, 127
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 45, 63
BspT107I GGYRCC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 2 cut(s) 151, 273
BssNI GRCGYC 2 cut(s) 62, 177
Bst2UI CCWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 2 cut(s) 62, 177
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 154, 276
BstMBI GATC 2 cut(s) 151, 273
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 95, 133, 142, 190, 237
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 2 cut(s) 8, 127
BsuTUI ATCGAT 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 2 cut(s) 58, 160
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 253
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 324
DinI GGCGCC 1 cut(s) 63
DpnI GATC 2 cut(s) 153, 275
DpnII GATC 2 cut(s) 151, 273
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 2 cut(s) 224, 284
EclXI CGGCCG 1 cut(s) 6
Eco32I GATATC 1 cut(s) 205
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 90, 226
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 205
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaiI YATR 1 cut(s) 190
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 6, 96, 194, 218, 238
Fsp4HI GCNGC 5 cut(s) 6, 96, 194, 218, 238
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 63
GluI GCNGC 5 cut(s) 6, 96, 194, 218, 238
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 2 cut(s) 8, 127
HapII CCGG 2 cut(s) 9, 266
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 2 cut(s) 62, 177
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 1 cut(s) 262
HpaII CCGG 2 cut(s) 9, 266
Hpy166II GTNNAC 3 cut(s) 132, 166, 298
Hpy188I TCNGA 2 cut(s) 24, 82
Hpy188III TCNNGA 3 cut(s) 226, 277, 317
Hpy8I GTNNAC 3 cut(s) 132, 166, 298
Hpy99I CGWCG 2 cut(s) 43, 179
HpyAV CCTTC 3 cut(s) 280, 304, 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 133, 142, 190, 237
HpyF3I CTNAG 1 cut(s) 324
Hsp92I GRCGYC 2 cut(s) 62, 177
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 151, 273
LmnI GCTCC 2 cut(s) 43, 162
LpnPI CCDG 8 cut(s) 22, 44, 109, 146, 173, 227, 279, 302
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 66
MalI GATC 2 cut(s) 153, 275
MbiI CCGCTC 1 cut(s) 220
MboI GATC 2 cut(s) 151, 273
MboII GAAGA 3 cut(s) 103, 115, 271
MluCI AATT 2 cut(s) 242, 348
Mly113I GGCGCC 1 cut(s) 62
MnlI CCTC 8 cut(s) 86, 119, 127, 242, 298, 325, 328, 338
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 1 cut(s) 33
MspI CCGG 2 cut(s) 9, 266
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 95, 133, 142, 190, 237
NarI GGCGCC 1 cut(s) 62
NdeII GATC 2 cut(s) 151, 273
NlaIV GGNNCC 2 cut(s) 45, 63
NmeAIII GCCGAG 1 cut(s) 205
PaeR7I CTCGAG 2 cut(s) 90, 226
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 5 cut(s) 7, 97, 195, 219, 239
PluTI GGCGCC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 45, 63
PspXI VCTCGAGB 1 cut(s) 90
PstNI CAGNNNCTG 2 cut(s) 58, 160
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 5 cut(s) 6, 96, 194, 218, 238
Sau3AI GATC 2 cut(s) 151, 273
ScrFI CCNGG 1 cut(s) 161
SetI ASST 8 cut(s) 22, 78, 111, 159, 285, 291, 315, 325
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 2 cut(s) 90, 226
SlaI CTCGAG 2 cut(s) 90, 226
SmlI CTYRAG 2 cut(s) 90, 226
SmoI CTYRAG 2 cut(s) 90, 226
Sse9I AATT 2 cut(s) 242, 348
SsiI CCGC 7 cut(s) 5, 96, 218, 235, 238, 250, 269
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 159
TaqI TCGA 6 cut(s) 91, 150, 174, 201, 227, 352
TasI AATT 2 cut(s) 242, 348
TauI GCSGC 4 cut(s) 8, 98, 220, 240
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 59
TseI GCWGC 1 cut(s) 193
TspGWI ACGGA 3 cut(s) 19, 56, 315
TspRI CASTG 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 1 cut(s) 348
XhoI CTCGAG 2 cut(s) 90, 226
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.