pycom06g15350

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002128
Physical Location & Seq
Reverse (-)
19893678 .. 19894857
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15350.1

Sequence Viewer

Length: 777 bp
ATGGCGTTCAATAACGATGCCCTGAATTCCCTGAAAGCCACAGAACCGACGCAGCTACTTGCGCCGAACCCCGCCCTCTCTCAAACGGCTCGAGCCGCCCTGCAGGGCATCTTCTCCTCCATCAGGCCGTTCACGCCCAAGTCGCCGTTTGACCAGCTCCTGGTCGACGGATTCGACGCCGAGCAGATATGGCAGCAAATCGACCTCCAATCTCAGCCCCTCATCTCCACCCTCAGCCGCGATTTGAAGCGGTTTGAGAAGAACCCGGAGGAGATTAAGACGCTGAAGGTGGTCGTGGAAGGGGAGGAGAAGGTTCTGGAAGCTCAGAGCCAGGGTTTGAGGGTTAAAATTGGGGGCGTTGACGAGGAATTGGACGGATTTGACGACGACAGTGACGAGGAGGAGGAGGAGGAGGAGGAAGAAGGTGAAGGGAGTGAGAGTGAGGAGAGAGATGGAGAGGAAGAAGAGGAGAGAGAGGAAAGTGAAAGTGAAAGTAAAAGTGAAGGGGGATATAATAATGCGATAGAGGACGGATTTTTCAAGATAAAGGATTTGAAGAAGTCTTTGGAGGAAAGTGAAGCAAGGGAATATGGGCTAGATAAGACTGATAAGAAGAAAAAGAAGAGAAGAGATGACGACGACGATGAGGATGAAGAAGATGAGGGGCTTGGAGACTTAGACATTGACGATGATGAGGATGACAAAGACAAGTTTGCAAGATATGAAGACTTCTATGGAGGAAAAAAGGAAAAGCGTTCTACACGAAGATCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

4.25

Isoelectric Point (pI)

75.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 45 - 255 1.2e-23 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 72, 96, 238, 250
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 123, 160
AgsI TTSAA 4 cut(s) 10, 247, 541, 556
AjnI CCWGG 2 cut(s) 159, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 55, 157, 323
AluI AGCT 3 cut(s) 55, 157, 323
Alw26I GTCTC 1 cut(s) 666
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 52, 193
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 732
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 64, 205
BccI CCATC 2 cut(s) 128, 446
BceAI ACGGC 3 cut(s) 102, 112, 130
BciT130I CCWGG 2 cut(s) 161, 332
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 101
BisI GCNGC 4 cut(s) 53, 96, 194, 238
BlsI GCNGC 4 cut(s) 54, 97, 195, 239
Bme1390I CCNGG 3 cut(s) 161, 266, 332
BmeT110I CYCGRG 1 cut(s) 90
BmrFI CCNGG 3 cut(s) 161, 266, 332
BmsI GCATC 2 cut(s) 7, 117
BpiI GAAGAC 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 160
BseBI CCWGG 2 cut(s) 161, 332
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 655, 703
BseLI CCNNNNNNNGG 2 cut(s) 123, 160
BseMII CTCAG 3 cut(s) 227, 247, 338
BseXI GCAGC 2 cut(s) 64, 205
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 123, 160
BsmAI GTCTC 1 cut(s) 666
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 1 cut(s) 767
BspACI CCGC 4 cut(s) 72, 96, 238, 250
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 3 cut(s) 226, 246, 337
BspFNI CGCG 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 1 cut(s) 767
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 161, 332
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 3 cut(s) 459, 617, 622
BstACI GRCGYC 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 213, 233, 324, 676
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 655, 703
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 1 cut(s) 770
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 1 cut(s) 767
BstMWI GCNNNNNNNGC 5 cut(s) 61, 95, 133, 142, 190
BstNI CCWGG 2 cut(s) 161, 332
BstSCI CCNGG 3 cut(s) 159, 264, 330
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 64, 205
BstV2I GAAGAC 1 cut(s) 732
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 2 cut(s) 655, 703
BtsIMutI CAGTG 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 1 cut(s) 64
CseI GACGC 3 cut(s) 58, 185, 289
DdeI CTNAG 4 cut(s) 213, 233, 324, 676
DpnI GATC 1 cut(s) 769
DpnII GATC 1 cut(s) 767
Eam1104I CTCTTC 3 cut(s) 459, 617, 622
EarI CTCTTC 3 cut(s) 459, 617, 622
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 159, 330
FaiI YATR 5 cut(s) 190, 513, 591, 723, 735
FauI CCCGC 1 cut(s) 79
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 53, 96, 194, 238
FokI GGATG 2 cut(s) 662, 710
Fsp4HI GCNGC 4 cut(s) 53, 96, 194, 238
FspBI CTAG 1 cut(s) 596
GlaI GCGC 1 cut(s) 63
GluI GCNGC 4 cut(s) 53, 96, 194, 238
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 266
HgaI GACGC 3 cut(s) 58, 185, 289
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 2 cut(s) 166, 361
HindII GTYRAC 2 cut(s) 166, 361
HinfI GANTC 1 cut(s) 171
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 132, 166, 361
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 317, 541
Hpy8I GTNNAC 3 cut(s) 132, 166, 361
Hpy99I CGWCG 6 cut(s) 52, 170, 179, 389, 641, 644
HpyAV CCTTC 6 cut(s) 280, 293, 304, 416, 422, 497
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 103, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 95, 133, 142, 190
HpyF3I CTNAG 4 cut(s) 213, 233, 324, 676
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 767
LmnI GCTCC 1 cut(s) 162
Lsp1109I GCAGC 2 cut(s) 64, 205
LweI GCATC 2 cut(s) 7, 117
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 769
MboI GATC 1 cut(s) 767
MluCI AATT 4 cut(s) 25, 348, 368, 772
MseI TTAA 2 cut(s) 276, 345
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 3 cut(s) 161, 266, 332
MvaI CCWGG 2 cut(s) 161, 332
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 61, 95, 133, 142, 190
NciI CCSGG 1 cut(s) 266
NdeII GATC 1 cut(s) 767
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 381, 393
PfeI GAWTC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 4 cut(s) 54, 97, 195, 239
Psp6I CCWGG 2 cut(s) 159, 330
PspGI CCWGG 2 cut(s) 159, 330
PspXI VCTCGAGB 1 cut(s) 90
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 160
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 276, 345
SatI GCNGC 4 cut(s) 53, 96, 194, 238
Sau3AI GATC 1 cut(s) 767
SbfI CCTGCAGG 1 cut(s) 105
ScrFI CCNGG 3 cut(s) 161, 266, 332
SdaI CCTGCAGG 1 cut(s) 105
SetI ASST 7 cut(s) 57, 159, 207, 291, 315, 325, 427
SfaNI GCATC 2 cut(s) 7, 117
SfcI CTRYAG 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse8387I CCTGCAGG 1 cut(s) 105
Sse9I AATT 4 cut(s) 25, 348, 368, 772
SsiI CCGC 4 cut(s) 72, 96, 238, 250
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 3 cut(s) 159, 264, 330
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 5 cut(s) 91, 165, 174, 201, 770
TasI AATT 4 cut(s) 25, 348, 368, 772
TauI GCSGC 2 cut(s) 98, 240
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 276, 345
Tru9I TTAA 2 cut(s) 276, 345
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 2 cut(s) 52, 193
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 666, 738
TspGWI ACGGA 3 cut(s) 183, 390, 546
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.