Rroxscaffold_3G00262180

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002128
Physical Location & Seq
Forward (+)
56254622 .. 56258335
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262180.1

Sequence Viewer

Length: 540 bp
ATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAAGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGCAAGAGTATCTTCAAAAGATGAATGCAGATTCTGGCCCGTTGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATGCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTCTTTCTCATTTCCATTTCACTCCAAAACCGGTTATTGAGGATATGTCTATACAAGATAATGTCCCCGCTCTAGTTATGGAAGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCTGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCAGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATAGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

179

Amino Acids

20.49

Weight (kDa)

9.02

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 1 - 160 1e-48 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 2 cut(s) 312, 344
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 44, 149, 235
AluBI AGCT 3 cut(s) 368, 449, 473
AluI AGCT 3 cut(s) 368, 449, 473
Alw26I GTCTC 2 cut(s) 352, 501
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 464
AsiGI ACCGGT 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 407
AsuNHI GCTAGC 1 cut(s) 364
AxyI CCTNAGG 1 cut(s) 372
BanII GRGCYC 1 cut(s) 52
BauI CACGAG 1 cut(s) 504
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 85, 484
BcoDI GTCTC 2 cut(s) 352, 501
BfaI CTAG 2 cut(s) 317, 365
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 232, 343
BmtI GCTAGC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 352
BsaWI WCCGGW 2 cut(s) 6, 274
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 123
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 6
BseGI GGATG 4 cut(s) 100, 179, 247, 495
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 368
BshFI GGCC 1 cut(s) 171
BshTI ACCGGT 1 cut(s) 274
BsiSI CCGG 2 cut(s) 7, 275
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 352, 501
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 312, 344
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 364
BspEI TCCGGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 274
BssMI GATC 1 cut(s) 3
BssSI CACGAG 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 4 cut(s) 100, 179, 247, 495
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 352, 501
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 341, 365, 479
BstV1I GCAGC 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 4 cut(s) 100, 179, 247, 495
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 170
CspAI ACCGGT 1 cut(s) 274
CviJI RGCY 8 cut(s) 50, 122, 171, 368, 449, 473, 502, 533
CviKI_1 RGCY 8 cut(s) 50, 122, 171, 368, 449, 473, 502, 533
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 52
FaiI YATR 7 cut(s) 132, 290, 296, 323, 527, 536, 538
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 402, 434
FaqI GGGAC 1 cut(s) 293
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 4 cut(s) 107, 166, 254, 502
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 317, 365
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 7, 275
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 7, 275
HphI GGTGA 1 cut(s) 407
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 3 cut(s) 7, 220, 371
HpyCH4V TGCA 3 cut(s) 161, 335, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 365, 479
HpyF3I CTNAG 1 cut(s) 372
Kpn2I TCCGGA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 55, 373
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 232, 343
MaeI CTAG 2 cut(s) 317, 365
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 314
MboI GATC 1 cut(s) 3
MboII GAAGA 5 cut(s) 137, 137, 208, 338, 419
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 196, 277, 367, 435
MroI TCCGGA 1 cut(s) 6
MseI TTAA 2 cut(s) 402, 468
MspI CCGG 2 cut(s) 7, 275
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 341, 365, 479
NdeI CATATG 1 cut(s) 536
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 364
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 475
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 402, 468
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 52
SetI ASST 6 cut(s) 64, 340, 370, 397, 451, 475
SfaNI GCATC 2 cut(s) 232, 343
Sse9I AATT 1 cut(s) 464
SsiI CCGC 2 cut(s) 312, 344
SspMI CTAG 2 cut(s) 317, 365
TasI AATT 1 cut(s) 464
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 402, 468
Tru9I TTAA 2 cut(s) 402, 468
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 170
XapI RAATTY 1 cut(s) 464
XspI CTAG 2 cut(s) 317, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.