Rh6CG114600

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002128
Physical Location & Seq
Forward (+)
13106242 .. 13109440
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG114600.1

Sequence Viewer

Length: 1113 bp
ATGGCGGCCGGTAGCGAAGCGCTGAACTCCGTTAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGGTCAGCTCCTGGTGGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGGGAAGCTGAGGACGACGGGGATGGCAAGGATGCAAGATATGAAGACTTCTTTGGGAAAAAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGTGGGGAGAGGTAACTGCAACAAAAAGGCCACCGAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAGGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGCAAGAGTATCTTCAAAAGATGAATGCAGATTCTGGCCCGTTGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATGCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTCTTTCTCATTTCCACTTCACTCCAAAACCCGTTATTGAGGATATGTCTATACAAGATAATGTCCCTGCTCTAGTTATGGAAGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCGGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATCGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

370

Amino Acids

41.62

Weight (kDa)

5.65

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 95 - 351 3.9e-81 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 61, 643
AccB7I CCANNNNNTGG 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 579
AclWI GGATC 1 cut(s) 571
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 1037
AcuI CTGAAG 2 cut(s) 312, 717
AcyI GRCGYC 2 cut(s) 62, 184
AfaI GTAC 1 cut(s) 261
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 130, 441
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 6 cut(s) 103, 254, 515, 617, 722, 808
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 6 cut(s) 164, 290, 302, 941, 1022, 1046
AluI AGCT 6 cut(s) 164, 290, 302, 941, 1022, 1046
Alw26I GTCTC 2 cut(s) 925, 1074
AlwI GGATC 1 cut(s) 571
AlwNI CAGNNNCTG 4 cut(s) 58, 167, 385, 740
Ama87I CYCGRG 2 cut(s) 90, 233
Aor13HI TCCGGA 1 cut(s) 579
Aor51HI AGCGCT 1 cut(s) 21
AoxI GGCC 4 cut(s) 6, 132, 476, 742
ApeKI GCWGC 3 cut(s) 200, 379, 929
ApoI RAATTY 1 cut(s) 1037
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 22, 64
AspS9I GGNCC 3 cut(s) 430, 444, 743
AsuHPI GGTGA 1 cut(s) 980
AsuNHI GCTAGC 1 cut(s) 937
AvaI CYCGRG 2 cut(s) 90, 233
AvaII GGWCC 2 cut(s) 430, 444
AxyI CCTNAGG 1 cut(s) 945
BanI GGYRCC 2 cut(s) 61, 643
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 1077
BbsI GAAGAC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 212, 391, 941
BccI CCATC 4 cut(s) 135, 311, 658, 1057
BceAI ACGGC 2 cut(s) 119, 191
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 925, 1074
BfaI CTAG 4 cut(s) 66, 506, 890, 938
BfoI RGCGCY 2 cut(s) 23, 65
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 7 cut(s) 6, 96, 201, 225, 245, 380, 930
BlsI GCNGC 7 cut(s) 7, 97, 202, 226, 246, 381, 931
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 430, 444
BmeT110I CYCGRG 2 cut(s) 90, 233
BmgT120I GGNCC 3 cut(s) 430, 444, 743
BmiI GGNNCC 5 cut(s) 45, 63, 432, 624, 645
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 4 cut(s) 316, 805, 916, 1107
BmtI GCTAGC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 208
BsaHI GRCGYC 2 cut(s) 62, 184
BsaI GGTCTC 1 cut(s) 925
BsaWI WCCGGW 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 441
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 696
Bse21I CCTNAGG 1 cut(s) 945
Bse3DI GCAATG 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 579
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 208
BseGI GGATG 6 cut(s) 322, 331, 673, 752, 820, 1068
BseLI CCNNNNNNNGG 2 cut(s) 130, 441
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 2 cut(s) 294, 936
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 3 cut(s) 113, 563, 1030
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 212, 391, 941
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 247
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 8, 134, 478, 744
BshNI GGYRCC 2 cut(s) 61, 643
BshVI ATCGAT 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 90, 233
BsiSI CCGG 3 cut(s) 9, 273, 580
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 2 cut(s) 130, 441
BsmAI GTCTC 2 cut(s) 925, 1074
BsmFI GGGAC 1 cut(s) 866
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 4 cut(s) 8, 134, 478, 744
Bso31I GGTCTC 1 cut(s) 925
BsoBI CYCGRG 2 cut(s) 90, 233
Bsp1286I GDGCHC 1 cut(s) 625
Bsp13I TCCGGA 1 cut(s) 579
Bsp143I GATC 4 cut(s) 280, 502, 540, 576
BspANI GGCC 4 cut(s) 8, 134, 478, 744
BspCNI CTCAG 2 cut(s) 295, 937
BspDI ATCGAT 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 579
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 5 cut(s) 45, 63, 432, 624, 645
BspOI GCTAGC 1 cut(s) 941
BspPI GGATC 1 cut(s) 571
BspT107I GGYRCC 2 cut(s) 61, 643
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 4 cut(s) 280, 502, 540, 576
BssNI GRCGYC 2 cut(s) 62, 184
BssSI CACGAG 1 cut(s) 1077
Bst2BI CACGAG 1 cut(s) 1077
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 488, 559
Bst6I CTCTTC 2 cut(s) 123, 894
BstACI GRCGYC 2 cut(s) 62, 184
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 60, 939
BstDEI CTNAG 3 cut(s) 303, 639, 945
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 6 cut(s) 322, 331, 673, 752, 820, 1068
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 2 cut(s) 23, 65
BstHHI GCGC 2 cut(s) 22, 64
BstKTI GATC 4 cut(s) 283, 505, 543, 579
BstMAI GTCTC 2 cut(s) 925, 1074
BstMBI GATC 4 cut(s) 280, 502, 540, 576
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 8 cut(s) 95, 140, 149, 197, 244, 914, 938, 1052
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 212, 391, 941
BstV2I GAAGAC 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 4 cut(s) 8, 134, 478, 744
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 6 cut(s) 322, 331, 673, 752, 820, 1068
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 493
Cac8I GCNNGC 2 cut(s) 60, 939
CaiI CAGNNNCTG 4 cut(s) 58, 167, 385, 740
CfoI GCGC 2 cut(s) 22, 64
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 430, 444, 743
ClaI ATCGAT 1 cut(s) 208
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 260
CviAII CATG 2 cut(s) 371, 448
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 3 cut(s) 303, 639, 945
DinI GGCGCC 1 cut(s) 63
DpnI GATC 4 cut(s) 282, 504, 542, 578
DpnII GATC 4 cut(s) 280, 502, 540, 576
DraI TTTAAA 1 cut(s) 1042
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 123, 894
EarI CTCTTC 2 cut(s) 123, 894
EciI GGCGGA 3 cut(s) 231, 291, 1016
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 1 cut(s) 925
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 430, 444
Eco47III AGCGCT 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 312, 717
Eco81I CCTNAGG 1 cut(s) 945
Eco88I CYCGRG 2 cut(s) 90, 233
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 2 cut(s) 374, 451
FalI AAGNNNNNCTT 4 cut(s) 702, 734, 975, 1007
FaqI GGGAC 1 cut(s) 866
FatI CATG 2 cut(s) 370, 447
FauI CCCGC 1 cut(s) 538
FauNDI CATATG 1 cut(s) 1109
Fnu4HI GCNGC 7 cut(s) 6, 96, 201, 225, 245, 380, 930
FokI GGATG 6 cut(s) 329, 338, 680, 739, 827, 1075
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 7 cut(s) 6, 96, 201, 225, 245, 380, 930
FspBI CTAG 4 cut(s) 66, 506, 890, 938
GlaI GCGC 2 cut(s) 21, 63
GluI GCNGC 7 cut(s) 6, 96, 201, 225, 245, 380, 930
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 23, 65
HaeIII GGCC 4 cut(s) 8, 134, 478, 744
HapII CCGG 3 cut(s) 9, 273, 580
HgaI GACGC 1 cut(s) 192
HhaI GCGC 2 cut(s) 22, 64
Hin1I GRCGYC 2 cut(s) 62, 184
Hin1II CATG 2 cut(s) 374, 451
Hin6I GCGC 2 cut(s) 20, 62
HinP1I GCGC 2 cut(s) 20, 62
HinfI GANTC 2 cut(s) 269, 737
HpaII CCGG 3 cut(s) 9, 273, 580
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 2 cut(s) 139, 173
Hpy188I TCNGA 4 cut(s) 82, 400, 540, 925
Hpy188III TCNNGA 6 cut(s) 233, 284, 506, 580, 793, 944
Hpy8I GTNNAC 2 cut(s) 139, 173
Hpy99I CGWCG 3 cut(s) 43, 186, 314
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 488, 559
HpyCH4V TGCA 5 cut(s) 329, 467, 734, 908, 929
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 140, 149, 197, 244, 914, 938, 1052
HpyF3I CTNAG 3 cut(s) 303, 639, 945
Hsp92I GRCGYC 2 cut(s) 62, 184
Hsp92II CATG 2 cut(s) 374, 451
HspAI GCGC 2 cut(s) 20, 62
KasI GGCGCC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 579
Kzo9I GATC 4 cut(s) 280, 502, 540, 576
LmnI GCTCC 4 cut(s) 43, 169, 628, 946
Lsp1109I GCAGC 3 cut(s) 212, 391, 941
LweI GCATC 4 cut(s) 316, 805, 916, 1107
MaeI CTAG 4 cut(s) 66, 506, 890, 938
MaeIII GTNAC 3 cut(s) 460, 553, 1048
MalI GATC 4 cut(s) 282, 504, 542, 578
MbiI CCGCTC 1 cut(s) 227
MboI GATC 4 cut(s) 280, 502, 540, 576
MboII GAAGA 9 cut(s) 110, 115, 278, 350, 710, 710, 781, 911, 992
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 2 cut(s) 249, 1037
Mly113I GGCGCC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 792
MroI TCCGGA 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 4 cut(s) 33, 393, 975, 1041
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 3 cut(s) 9, 273, 580
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 8 cut(s) 95, 140, 149, 197, 244, 914, 938, 1052
NarI GGCGCC 1 cut(s) 62
NdeI CATATG 1 cut(s) 1109
NdeII GATC 4 cut(s) 280, 502, 540, 576
NheI GCTAGC 1 cut(s) 937
NlaIII CATG 2 cut(s) 374, 451
NlaIV GGNNCC 5 cut(s) 45, 63, 432, 624, 645
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 1048
PaeR7I CTCGAG 2 cut(s) 90, 233
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 269, 737
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 7 cut(s) 7, 97, 202, 226, 246, 381, 931
PluTI GGCGCC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 5 cut(s) 45, 63, 432, 624, 645
PspPI GGNCC 3 cut(s) 430, 444, 743
PspXI VCTCGAGB 1 cut(s) 90
PstNI CAGNNNCTG 4 cut(s) 58, 167, 385, 740
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 4 cut(s) 33, 393, 975, 1041
SatI GCNGC 7 cut(s) 6, 96, 201, 225, 245, 380, 930
Sau3AI GATC 4 cut(s) 280, 502, 540, 576
Sau96I GGNCC 3 cut(s) 430, 444, 743
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 4 cut(s) 316, 805, 916, 1107
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 2 cut(s) 90, 233
SinI GGWCC 2 cut(s) 430, 444
SlaI CTCGAG 2 cut(s) 90, 233
SmlI CTYRAG 3 cut(s) 90, 233, 392
SmoI CTYRAG 3 cut(s) 90, 233, 392
Sse9I AATT 2 cut(s) 249, 1037
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 4 cut(s) 66, 506, 890, 938
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 488, 559
TaqI TCGA 6 cut(s) 91, 111, 181, 208, 234, 1101
TaqII GACCGA 1 cut(s) 147
TasI AATT 2 cut(s) 249, 1037
TauI GCSGC 4 cut(s) 8, 98, 227, 247
TfiI GAWTC 2 cut(s) 269, 737
Tru1I TTAA 4 cut(s) 33, 393, 975, 1041
Tru9I TTAA 4 cut(s) 33, 393, 975, 1041
TscAI CASTG 2 cut(s) 59, 493
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 3 cut(s) 200, 379, 929
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 3 cut(s) 351, 387, 743
TspGWI ACGGA 2 cut(s) 19, 56
TspRI CASTG 2 cut(s) 59, 493
Van91I CCANNNNNTGG 1 cut(s) 441
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 430, 444
XagI CCTNNNNNAGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 1037
XbaI TCTAGA 1 cut(s) 505
XhoI CTCGAG 2 cut(s) 90, 233
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 66, 506, 890, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.