Rh7AG135000

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002128
Physical Location & Seq
Reverse (-)
10803771 .. 10804507
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG135000.1

Sequence Viewer

Length: 219 bp
ATGGAAGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCTGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTATGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATAGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

72

Amino Acids

8.1

Weight (kDa)

9.75

Isoelectric Point (pI)

76.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 1 - 55 7e-13 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 107
AcsI RAATTY 1 cut(s) 143
AluBI AGCT 3 cut(s) 47, 128, 152
AluI AGCT 3 cut(s) 47, 128, 152
Alw26I GTCTC 2 cut(s) 31, 180
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 51
BauI CACGAG 1 cut(s) 183
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 31, 180
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmsI GCATC 1 cut(s) 22
BmtI GCTAGC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 31, 180
Bso31I GGTCTC 1 cut(s) 31
BspACI CCGC 2 cut(s) 23, 107
BspCNI CTCAG 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 45
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 31, 180
BstMWI GCNNNNNNNGC 3 cut(s) 20, 44, 158
BstV1I GCAGC 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 45
CviJI RGCY 5 cut(s) 47, 128, 152, 181, 212
CviKI_1 RGCY 5 cut(s) 47, 128, 152, 181, 212
DdeI CTNAG 1 cut(s) 51
DraI TTTAAA 1 cut(s) 148
EciI GGCGGA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 51
FaiI YATR 4 cut(s) 155, 206, 215, 217
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 36
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 14, 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 44, 158
HpyF3I CTNAG 1 cut(s) 51
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 30, 51, 63, 89
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 44
MboII GAAGA 2 cut(s) 17, 98
MluCI AATT 1 cut(s) 143
MnlI CCTC 2 cut(s) 46, 114
MseI TTAA 2 cut(s) 81, 147
MwoI GCNNNNNNNGC 3 cut(s) 20, 44, 158
NdeI CATATG 1 cut(s) 215
NheI GCTAGC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 81, 147
SatI GCNGC 1 cut(s) 36
SetI ASST 5 cut(s) 19, 49, 76, 130, 154
SfaNI GCATC 1 cut(s) 22
SgeI CNNG 9 cut(s) 29, 56, 62, 78, 116, 145, 195, 197, 208
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 23, 107
SspMI CTAG 1 cut(s) 44
TasI AATT 1 cut(s) 143
Tru1I TTAA 2 cut(s) 81, 147
Tru9I TTAA 2 cut(s) 81, 147
TseI GCWGC 1 cut(s) 35
XapI RAATTY 1 cut(s) 143
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.