Rw7G011540

U3 small nucleolar ribonucleoprotein protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
10828521 .. 10831771
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011540.1

Sequence Viewer

Length: 1353 bp
ATGGCGGCCGGTAGCGAAGCTCTGAACTCCGTGAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGATCAGCTCCTGGTGGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGTGGTTGTGGACGGAGAGGAGAAGGTTCTGGAAGCTGAGAAGGAGGAGGACGGCGAGGAATTCGATGAGGATTTGGAGGAATCTGATGAAGAAGAAGAAGATGATGATGACGACGAGGAGGAGGAGGAAGAAGAAAAGGTAGAAGCAGAAGATGAAGAAGAAGGTGGAGGCAACAATGAAATTGAGGACGGTTTCTTTAATATAAAGGCTTTAGGGAAGTATTTGAAGGCTACAGAAGCAGAGGAATATGAGAATGACAAAGAAGAAGATGGTGAAGATAAGGAGGAGGAAGAGGATGATGCTCGGGAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGCGGGGAGAGGTAACTGCAACAAAGAGGCCACCGAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAAGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGCAAGAGTATATTCAAAAGATGAATGCAGATTCTGGCCCGTTGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATGCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTCTTTCTCATTTCCACTTCACTCCAAAACCGGTTATTGAGGATATGTCTATACAAGATAATGTTCCCGCTCTAGTTATGGAAGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCTGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATAGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

51.42

Weight (kDa)

4.55

Isoelectric Point (pI)

68.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 16 - 191 4.5e-19 Mpp10 protein
Mpp10 PF04006 180 - 431 9.9e-83 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 2 cut(s) 220, 1127
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 819
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 347, 1277
AcuI CTGAAG 2 cut(s) 305, 957
AcyI GRCGYC 2 cut(s) 62, 177
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 123, 681
AflII CTTAAG 1 cut(s) 632
AgeI ACCGGT 1 cut(s) 1087
AgsI TTSAA 7 cut(s) 103, 247, 514, 755, 857, 962, 1048
AjnI CCWGG 1 cut(s) 159
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 7 cut(s) 20, 157, 283, 323, 1181, 1262, 1286
AluI AGCT 7 cut(s) 20, 157, 283, 323, 1181, 1262, 1286
Alw26I GTCTC 2 cut(s) 1165, 1314
AlwI GGATC 1 cut(s) 811
AlwNI CAGNNNCTG 4 cut(s) 58, 160, 625, 980
Ama87I CYCGRG 3 cut(s) 90, 226, 591
Aor13HI TCCGGA 1 cut(s) 819
AoxI GGCC 4 cut(s) 6, 125, 716, 982
ApeKI GCWGC 3 cut(s) 193, 619, 1169
ApoI RAATTY 2 cut(s) 347, 1277
AsiGI ACCGGT 1 cut(s) 1087
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 670, 684, 983
AsuHPI GGTGA 2 cut(s) 572, 1220
AsuNHI GCTAGC 1 cut(s) 1177
AvaI CYCGRG 3 cut(s) 90, 226, 591
AvaII GGWCC 2 cut(s) 670, 684
AxyI CCTNAGG 1 cut(s) 1185
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 865
BauI CACGAG 1 cut(s) 1317
BbvI GCAGC 3 cut(s) 205, 631, 1181
BccI CCATC 4 cut(s) 128, 551, 898, 1297
BceAI ACGGC 3 cut(s) 112, 184, 355
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 1165, 1314
BfaI CTAG 4 cut(s) 66, 746, 1130, 1178
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 620, 1170
BlsI GCNGC 7 cut(s) 7, 97, 195, 219, 239, 621, 1171
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 670, 684
BmeT110I CYCGRG 3 cut(s) 90, 226, 591
BmgT120I GGNCC 3 cut(s) 670, 684, 983
BmiI GGNNCC 4 cut(s) 45, 63, 672, 864
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 577, 1045, 1156
BmtI GCTAGC 1 cut(s) 1181
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 62, 177
BsaI GGTCTC 1 cut(s) 1165
BsaWI WCCGGW 2 cut(s) 819, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 681
Bse118I RCCGGY 2 cut(s) 8, 1087
Bse1I ACTGG 1 cut(s) 936
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 1 cut(s) 1179
BseAI TCCGGA 1 cut(s) 819
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 201
BseGI GGATG 5 cut(s) 589, 913, 992, 1060, 1308
BseLI CCNNNNNNNGG 2 cut(s) 123, 681
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 2 cut(s) 315, 1176
BseNI ACTGG 1 cut(s) 936
BseRI GAGGAG 9 cut(s) 106, 320, 347, 419, 422, 425, 587, 803, 1270
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 205, 631, 1181
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 8, 127, 718, 984
BshNI GGYRCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 1087
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 3 cut(s) 90, 226, 591
BsiSI CCGG 4 cut(s) 9, 266, 820, 1088
BslI CCNNNNNNNGG 2 cut(s) 123, 681
BsmAI GTCTC 2 cut(s) 1165, 1314
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 4 cut(s) 8, 127, 718, 984
Bso31I GGTCTC 1 cut(s) 1165
BsoBI CYCGRG 3 cut(s) 90, 226, 591
Bsp1286I GDGCHC 1 cut(s) 865
Bsp13I TCCGGA 1 cut(s) 819
Bsp143I GATC 5 cut(s) 151, 273, 742, 780, 816
BspANI GGCC 4 cut(s) 8, 127, 718, 984
BspCNI CTCAG 2 cut(s) 316, 1177
BspDI ATCGAT 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 819
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 45, 63, 672, 864
BspOI GCTAGC 1 cut(s) 1181
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 1165
BsrBI CCGCTC 2 cut(s) 220, 1127
BsrDI GCAATG 1 cut(s) 1179
BsrFI RCCGGY 2 cut(s) 8, 1087
BsrI ACTGG 1 cut(s) 936
BssAI RCCGGY 2 cut(s) 8, 1087
BssMI GATC 5 cut(s) 151, 273, 742, 780, 816
BssNI GRCGYC 2 cut(s) 62, 177
BssSI CACGAG 1 cut(s) 1317
Bst2BI CACGAG 1 cut(s) 1317
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 479, 728, 799
Bst6I CTCTTC 3 cut(s) 116, 573, 1134
BstACI GRCGYC 2 cut(s) 62, 177
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 60, 1179
BstDEI CTNAG 2 cut(s) 324, 1185
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 5 cut(s) 589, 913, 992, 1060, 1308
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 5 cut(s) 154, 276, 745, 783, 819
BstMAI GTCTC 2 cut(s) 1165, 1314
BstMBI GATC 5 cut(s) 151, 273, 742, 780, 816
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 524, 1154, 1178, 1292
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 205, 631, 1181
BstXI CCANNNNNNTGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 1185
BsuRI GGCC 4 cut(s) 8, 127, 718, 984
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 5 cut(s) 589, 913, 992, 1060, 1308
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 733
Cac8I GCNNGC 2 cut(s) 60, 1179
CaiI CAGNNNCTG 4 cut(s) 58, 160, 625, 980
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 2 cut(s) 8, 1087
Cfr13I GGNCC 3 cut(s) 670, 684, 983
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 253
CspAI ACCGGT 1 cut(s) 1087
CviAII CATG 2 cut(s) 611, 688
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 324, 1185
DinI GGCGCC 1 cut(s) 63
DpnI GATC 5 cut(s) 153, 275, 744, 782, 818
DpnII GATC 5 cut(s) 151, 273, 742, 780, 816
DraI TTTAAA 1 cut(s) 1282
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 116, 573, 1134
EarI CTCTTC 3 cut(s) 116, 573, 1134
EciI GGCGGA 3 cut(s) 224, 284, 1256
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 1165
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 670, 684
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 305, 957
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 3 cut(s) 90, 226, 591
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 865
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 2 cut(s) 614, 691
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 1215, 1247
FatI CATG 2 cut(s) 610, 687
FauI CCCGC 3 cut(s) 684, 778, 1132
FauNDI CATATG 1 cut(s) 1349
Fnu4HI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 620, 1170
FokI GGATG 5 cut(s) 596, 920, 979, 1067, 1315
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 620, 1170
FspBI CTAG 4 cut(s) 66, 746, 1130, 1178
GlaI GCGC 1 cut(s) 63
GluI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 620, 1170
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 4 cut(s) 8, 127, 718, 984
HapII CCGG 4 cut(s) 9, 266, 820, 1088
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 2 cut(s) 62, 177
Hin1II CATG 2 cut(s) 614, 691
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 3 cut(s) 262, 368, 977
HpaII CCGG 4 cut(s) 9, 266, 820, 1088
HphI GGTGA 2 cut(s) 572, 1220
Hpy166II GTNNAC 3 cut(s) 132, 166, 298
Hpy188I TCNGA 6 cut(s) 24, 82, 373, 640, 780, 1165
Hpy188III TCNNGA 8 cut(s) 226, 277, 317, 593, 746, 820, 1033, 1184
Hpy8I GTNNAC 3 cut(s) 132, 166, 298
Hpy99I CGWCG 3 cut(s) 43, 179, 404
HpyAV CCTTC 5 cut(s) 280, 304, 322, 443, 508
HpyCH4III ACNGT 3 cut(s) 479, 728, 799
HpyCH4V TGCA 4 cut(s) 707, 974, 1148, 1169
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 524, 1154, 1178, 1292
HpyF3I CTNAG 2 cut(s) 324, 1185
Hsp92I GRCGYC 2 cut(s) 62, 177
Hsp92II CATG 2 cut(s) 614, 691
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 819
Kzo9I GATC 5 cut(s) 151, 273, 742, 780, 816
LmnI GCTCC 4 cut(s) 43, 162, 868, 1186
Lsp1109I GCAGC 3 cut(s) 205, 631, 1181
LweI GCATC 3 cut(s) 577, 1045, 1156
MaeI CTAG 4 cut(s) 66, 746, 1130, 1178
MaeIII GTNAC 3 cut(s) 700, 793, 1288
MalI GATC 5 cut(s) 153, 275, 744, 782, 818
MbiI CCGCTC 2 cut(s) 220, 1127
MboI GATC 5 cut(s) 151, 273, 742, 780, 816
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 4 cut(s) 242, 347, 468, 1277
Mly113I GGCGCC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 1032
MroI TCCGGA 1 cut(s) 819
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 4 cut(s) 486, 633, 1215, 1281
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 4 cut(s) 9, 266, 820, 1088
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 524, 1154, 1178, 1292
NarI GGCGCC 1 cut(s) 62
NdeI CATATG 1 cut(s) 1349
NdeII GATC 5 cut(s) 151, 273, 742, 780, 816
NheI GCTAGC 1 cut(s) 1177
NlaIII CATG 2 cut(s) 614, 691
NlaIV GGNNCC 4 cut(s) 45, 63, 672, 864
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 1288
PaeR7I CTCGAG 2 cut(s) 90, 226
PctI GAATGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 262, 368, 977
PflMI CCANNNNNTGG 1 cut(s) 681
PinAI ACCGGT 1 cut(s) 1087
PkrI GCNGC 7 cut(s) 7, 97, 195, 219, 239, 621, 1171
PluTI GGCGCC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 45, 63, 672, 864
PspPI GGNCC 3 cut(s) 670, 684, 983
PspXI VCTCGAGB 1 cut(s) 90
PstNI CAGNNNCTG 4 cut(s) 58, 160, 625, 980
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 4 cut(s) 486, 633, 1215, 1281
SatI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 620, 1170
Sau3AI GATC 5 cut(s) 151, 273, 742, 780, 816
Sau96I GGNCC 3 cut(s) 670, 684, 983
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 3 cut(s) 577, 1045, 1156
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 2 cut(s) 90, 226
SinI GGWCC 2 cut(s) 670, 684
SlaI CTCGAG 2 cut(s) 90, 226
SmlI CTYRAG 3 cut(s) 90, 226, 632
SmoI CTYRAG 3 cut(s) 90, 226, 632
Sse9I AATT 4 cut(s) 242, 347, 468, 1277
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 4 cut(s) 66, 746, 1130, 1178
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 479, 728, 799
TaqI TCGA 6 cut(s) 91, 150, 174, 201, 227, 351
TasI AATT 4 cut(s) 242, 347, 468, 1277
TauI GCSGC 4 cut(s) 8, 98, 220, 240
TfiI GAWTC 3 cut(s) 262, 368, 977
Tru1I TTAA 4 cut(s) 486, 633, 1215, 1281
Tru9I TTAA 4 cut(s) 486, 633, 1215, 1281
TscAI CASTG 2 cut(s) 59, 733
TseFI GTSAC 1 cut(s) 1288
TseI GCWGC 3 cut(s) 193, 619, 1169
Tsp45I GTSAC 1 cut(s) 1288
TspDTI ATGAA 5 cut(s) 390, 456, 480, 627, 983
TspGWI ACGGA 3 cut(s) 19, 56, 315
TspRI CASTG 2 cut(s) 59, 733
Van91I CCANNNNNTGG 1 cut(s) 681
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 670, 684
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 2 cut(s) 347, 1277
XbaI TCTAGA 1 cut(s) 745
XhoI CTCGAG 2 cut(s) 90, 226
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 4 cut(s) 66, 746, 1130, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.