MD01G1006000.v1.1

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0002128
Physical Location & Seq
Forward (+)
2154127 .. 2157701
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1006000.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGATTTGACGACGACATTGACGAGGAGGAGGAGGAGGAAGAAGGTGAAGGGAGTGAGAGTGAGGAGAGAGATGGAGAGGAAGAAGAGGAGAGAGAGGAAAGTGAAAGTGAAAGTGAAGGGGAAGATAAATAATGCGATAGAGGACGGGTTTTTCAAGATAAAGGATTTGAAGAAGTCTTTGGAGGAAAGTGAAGCAAGGGAATATGGGCTAGATAAGACTGATAAGAAGAAAAAGAAGAGAAGGGATGACGACGACGACGAGGAGGAGGATGAAGAAGATGAGGGGCTTGGAGACTTAGACATTGACGATGATGAGGATGACAAAGACAAGTTTGCAAGATATGAAGACTTCTATGGAGGAAAAAAGGAAAAGCGTTCTACACGAAGATCAAAATTGATTGATGAATCAGAAGATTTGGGGACAAACGACGGAGAAGAAGATGAACAAGACGAGGAGGAAGATGATCAAGATGAAGATGATCAAGAAGAAGGAGATGAAGATGAACAAGAAGATGAGAAGGTAACTGCAGCGACAAGGCCAAAGAACAGTGCGCTAGAAGTTGATCTGGATTTTGAGCACAATGTTAGACCTCCCCCTGTAATCACAGAGGAGGTTACAGCATCAATTGAGGATATAATCAAGAAAAGGATTGAGGAGGGGCGGTTTGATGATGTTCAAAAAGCTCCTACTTTACCCTCTAAAGCACCAAGAGAACTTAAAGAGTTGGACGAGAACAAGAGCAAGAAGGGTCTAGCTGATGTCTATGAGGAAGAGTATGTTCAAAAGACAAATTTGGCTTCTGCTCCGTTTTCATTAACAGACAAACAGAAGGACGAGGCAAGCAAGCTGTTCAAGAAACTTTGCTTGAAGTTGGATGCTCTCTCTCATTTCCACTTCAGTCCAAAACCTGTTATCGAGGATATGTCGGTACAAGCCAATGTCCCTGCTCTAGCAATGGAAGAGATTGCACCTGTGGCCGTGTCCGATGCAGCAATGCTAGCTCCTGAGGAAGTGTTTTCCGGCAAAGGTGACATCAAAGAAGAAGCAGAGCTTACACAGGCAGAGAGAAAGCGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

372

Amino Acids

42.89

Weight (kDa)

4.96

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 175 - 367 3.9e-68 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 664, 1075
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 2 cut(s) 793, 1100
AcuI CTGAAG 1 cut(s) 883
AfaI GTAC 1 cut(s) 933
AgsI TTSAA 6 cut(s) 157, 172, 680, 785, 856, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 6 cut(s) 686, 758, 850, 1004, 1054, 1085
AluI AGCT 6 cut(s) 686, 758, 850, 1004, 1054, 1085
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 288
AoxI GGCC 2 cut(s) 539, 978
ApeKI GCWGC 2 cut(s) 530, 992
ApoI RAATTY 2 cut(s) 793, 1100
AspLEI GCGC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 58, 1043
AsuNHI GCTAGC 1 cut(s) 1000
AxyI CCTNAGG 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 542, 1004
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 965
BclI TGATCA 2 cut(s) 466, 481
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 5 cut(s) 212, 557, 755, 953, 1001
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 531, 993
BlsI GCNGC 2 cut(s) 532, 994
BmsI GCATC 3 cut(s) 632, 868, 979
BmtI GCTAGC 1 cut(s) 1004
BpiI GAAGAC 1 cut(s) 354
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 650, 680
Bse21I CCTNAGG 1 cut(s) 1008
Bse3DI GCAATG 2 cut(s) 963, 1002
BseGI GGATG 4 cut(s) 253, 277, 325, 883
BseMI GCAATG 2 cut(s) 963, 1002
BseMII CTCAG 1 cut(s) 999
BseXI GCAGC 2 cut(s) 542, 1004
BshFI GGCC 2 cut(s) 541, 980
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 1023
BslFI GGGAC 2 cut(s) 436, 929
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 436, 929
BsnI GGCC 2 cut(s) 541, 980
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 4 cut(s) 389, 466, 481, 565
BspACI CCGC 2 cut(s) 664, 1075
BspANI GGCC 2 cut(s) 541, 980
BspCNI CTCAG 1 cut(s) 1000
BspMAI CTGCAG 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 963, 1002
BssMI GATC 4 cut(s) 389, 466, 481, 565
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 4 cut(s) 80, 233, 768, 957
BstC8I GCNNGC 3 cut(s) 844, 848, 1002
BstDEI CTNAG 2 cut(s) 298, 1008
BstF5I GGATG 4 cut(s) 253, 277, 325, 883
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 4 cut(s) 392, 469, 484, 568
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 4 cut(s) 389, 466, 481, 565
BstMWI GCNNNNNNNGC 2 cut(s) 977, 1001
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 542, 1004
BstV2I GAAGAC 1 cut(s) 354
Bsu36I CCTNAGG 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 541, 980
BtsCI GGATG 4 cut(s) 253, 277, 325, 883
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 844, 848, 1002
CfoI GCGC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 932
CviQI GTAC 1 cut(s) 932
DdeI CTNAG 2 cut(s) 298, 1008
DpnI GATC 4 cut(s) 391, 468, 483, 567
DpnII GATC 4 cut(s) 389, 466, 481, 565
DraI TTTAAA 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 4 cut(s) 80, 233, 768, 957
EarI CTCTTC 4 cut(s) 80, 233, 768, 957
Eco57I CTGAAG 1 cut(s) 883
Eco81I CCTNAGG 1 cut(s) 1008
FaiI YATR 7 cut(s) 207, 345, 357, 638, 768, 780, 926
FalI AAGNNNNNCTT 2 cut(s) 1038, 1070
FaqI GGGAC 2 cut(s) 436, 929
FbaI TGATCA 2 cut(s) 466, 481
Fnu4HI GCNGC 2 cut(s) 531, 993
FokI GGATG 4 cut(s) 260, 284, 332, 890
Fsp4HI GCNGC 2 cut(s) 531, 993
FspBI CTAG 5 cut(s) 212, 557, 755, 953, 1001
GlaI GCGC 1 cut(s) 555
GluI GCNGC 2 cut(s) 531, 993
HaeIII GGCC 2 cut(s) 541, 980
HapII CCGG 1 cut(s) 1023
HhaI GCGC 1 cut(s) 556
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 1023
HphI GGTGA 2 cut(s) 58, 1043
Hpy188I TCNGA 2 cut(s) 412, 988
Hpy188III TCNNGA 7 cut(s) 157, 470, 485, 569, 643, 856, 1007
Hpy99I CGWCG 5 cut(s) 16, 257, 260, 263, 434
HpyAV CCTTC 8 cut(s) 37, 43, 112, 237, 485, 514, 742, 826
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 4 cut(s) 338, 530, 971, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 977, 1001
HpyF3I CTNAG 2 cut(s) 298, 1008
HspAI GCGC 1 cut(s) 554
Ksp22I TGATCA 2 cut(s) 466, 481
Kzo9I GATC 4 cut(s) 389, 466, 481, 565
LmnI GCTCC 3 cut(s) 691, 811, 1009
LpnPI CCDG 8 cut(s) 554, 612, 924, 960, 987, 1020, 1036, 1046
Lsp1109I GCAGC 2 cut(s) 542, 1004
LweI GCATC 3 cut(s) 632, 868, 979
MaeI CTAG 5 cut(s) 212, 557, 755, 953, 1001
MaeIII GTNAC 3 cut(s) 523, 616, 1031
MalI GATC 4 cut(s) 391, 468, 483, 567
MboI GATC 4 cut(s) 389, 466, 481, 565
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 4 cut(s) 395, 627, 793, 1100
MmeI TCCRAC 2 cut(s) 708, 855
MseI TTAA 3 cut(s) 720, 818, 1104
MspI CCGG 1 cut(s) 1023
MunI CAATTG 1 cut(s) 627
MwoI GCNNNNNNNGC 2 cut(s) 977, 1001
NdeII GATC 4 cut(s) 389, 466, 481, 565
NheI GCTAGC 1 cut(s) 1000
NmuCI GTSAC 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 258
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 532, 994
PstI CTGCAG 1 cut(s) 532
RsaI GTAC 1 cut(s) 933
RsaNI GTAC 1 cut(s) 932
SaqAI TTAA 3 cut(s) 720, 818, 1104
SatI GCNGC 2 cut(s) 531, 993
Sau3AI GATC 4 cut(s) 389, 466, 481, 565
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 3 cut(s) 632, 868, 979
SfcI CTRYAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 395, 627, 793, 1100
SsiI CCGC 2 cut(s) 664, 1075
SspMI CTAG 5 cut(s) 212, 557, 755, 953, 1001
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 918
TasI AATT 4 cut(s) 395, 627, 793, 1100
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 3 cut(s) 720, 818, 1104
Tru9I TTAA 3 cut(s) 720, 818, 1104
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 1031
TseI GCWGC 2 cut(s) 530, 992
Tsp45I GTSAC 1 cut(s) 1031
TspDTI ATGAA 8 cut(s) 288, 360, 420, 459, 489, 513, 519, 804
TspGWI ACGGA 2 cut(s) 447, 798
TspRI CASTG 1 cut(s) 556
XapI RAATTY 2 cut(s) 793, 1100
XspI CTAG 5 cut(s) 212, 557, 755, 953, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.