Rh6CG376100

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002128
Physical Location & Seq
Reverse (-)
56240455 .. 56242448
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG376100.1

Sequence Viewer

Length: 570 bp
ATGAGAAGCTTGATTGATCTTACCTGCAACTTGCGAAGAAGAGGAGCAGAGGAGCGAGTGAACGACCAAAGCGGCGCTGAAGCTGAAGACGCTGAAGACGATCGAGACCTACGATCTGGAGTTTTTCACCTCATGAATCTAGGGGAAGGTGAGGACGATGGGGATGGTATGGATGCAAGATATGAAGACGTCTTTGGGAAAAAGGCACTTTCTACCCACGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAAAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGAGGGGAGAGGTAACTGCAACAAAAAGGCCACCAAACAGTGCGTTAGAAGTTGATCTAAATTTTGAACACAATGTTAGTCCCGCCCCTCCAATCATAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGAAAAAGGATCGAGCAGGATGAGAGTAAGAGCAAGAAAGGTCTGGCTGAAGATTATGAGCAAGAGTATTTGCAAAAGATGAATGCATATTCCAGCCCATTGTCATCCAAAGACAGGCAGAAGAATGAGTACATAGAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

189

Amino Acids

21.64

Weight (kDa)

4.81

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 27 - 149 1.1e-29 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 288
AciI CCGC 2 cut(s) 72, 378
AclWI GGATC 2 cut(s) 418, 443
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 4 cut(s) 99, 105, 114, 495
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 288, 540
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 362
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 9, 83
AluI AGCT 2 cut(s) 9, 83
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 418, 443
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 355
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 277, 291
AsuHPI GGTGA 2 cut(s) 119, 161
AvaII GGWCC 2 cut(s) 277, 291
BarI GAAGNNNNNNTAC 1 cut(s) 539
BbsI GAAGAC 3 cut(s) 93, 102, 192
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 152, 158
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 73, 227
BlsI GCNGC 2 cut(s) 74, 228
Bme18I GGWCC 2 cut(s) 277, 291
BmgT120I GGNCC 2 cut(s) 277, 291
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 3 cut(s) 93, 102, 192
BpmI CTGGAG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 540
BseGI GGATG 4 cut(s) 169, 178, 451, 530
BseLI CCNNNNNNNGG 2 cut(s) 288, 540
BseRI GAGGAG 3 cut(s) 57, 65, 410
BseXI GCAGC 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 288, 540
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 1 cut(s) 325
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 6 cut(s) 16, 100, 113, 349, 423, 435
BspACI CCGC 2 cut(s) 72, 378
BspANI GGCC 1 cut(s) 325
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 2 cut(s) 418, 443
BspTI CTTAAG 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 99
BssMI GATC 6 cut(s) 16, 100, 113, 349, 423, 435
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 335, 406
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 189
BstAFI CTTAAG 1 cut(s) 239
BstF5I GGATG 4 cut(s) 169, 178, 451, 530
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 6 cut(s) 19, 103, 116, 352, 426, 438
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 6 cut(s) 16, 100, 113, 349, 423, 435
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 3 cut(s) 93, 102, 192
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 4 cut(s) 169, 178, 451, 530
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 277, 291
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 133, 295
CviJI RGCY 5 cut(s) 9, 83, 325, 473, 522
CviKI_1 RGCY 5 cut(s) 9, 83, 325, 473, 522
CviQI GTAC 1 cut(s) 556
DpnI GATC 6 cut(s) 18, 102, 115, 351, 425, 437
DpnII GATC 6 cut(s) 16, 100, 113, 349, 423, 435
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 277, 291
Eco57I CTGAAG 4 cut(s) 99, 105, 114, 495
EcoT22I ATGCAT 1 cut(s) 514
FaeI CATG 2 cut(s) 136, 298
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 132, 294
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 73, 227
FokI GGATG 4 cut(s) 176, 185, 458, 517
Fsp4HI GCNGC 2 cut(s) 73, 227
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 227
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 325
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 136, 298
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 1 cut(s) 136
HphI GGTGA 2 cut(s) 119, 161
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 247, 428
Hpy188III TCNNGA 3 cut(s) 104, 117, 133
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 335, 406
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 27, 176, 314, 499, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 136, 298
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 6 cut(s) 16, 100, 113, 349, 423, 435
LmnI GCTCC 2 cut(s) 44, 52
LpnPI CCDG 6 cut(s) 37, 102, 428, 455, 526, 532
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 307, 400
MalI GATC 6 cut(s) 18, 102, 115, 351, 425, 437
MboI GATC 6 cut(s) 16, 100, 113, 349, 423, 435
MboII GAAGA 7 cut(s) 48, 51, 98, 107, 197, 488, 559
MluCI AATT 1 cut(s) 355
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 2 cut(s) 240, 568
MspCI CTTAAG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 514
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 6 cut(s) 16, 100, 113, 349, 423, 435
NlaIII CATG 2 cut(s) 136, 298
NlaIV GGNNCC 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 514
PagI TCATGA 1 cut(s) 132
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 109
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 2 cut(s) 74, 228
Ple19I CGATCG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 277, 291
PstNI CAGNNNCTG 1 cut(s) 232
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 240, 568
SatI GCNGC 2 cut(s) 73, 227
Sau3AI GATC 6 cut(s) 16, 100, 113, 349, 423, 435
Sau96I GGNCC 2 cut(s) 277, 291
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 2 cut(s) 277, 291
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 355
SsiI CCGC 2 cut(s) 72, 378
SspMI CTAG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 335, 406
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 103, 438
TasI AATT 1 cut(s) 355
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 240, 568
Tru9I TTAA 2 cut(s) 240, 568
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 149, 198, 521
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 288
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 277, 291
XapI RAATTY 1 cut(s) 355
XspI CTAG 1 cut(s) 140
ZraI GACGTC 1 cut(s) 190
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.