RLG00000024925

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002128
Physical Location & Seq
Reverse (-)
40394867 .. 40396014
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024925

Sequence Viewer

Length: 339 bp
ATGCAGATTCTGGCCCATTGTCATCTAAGGACAAGCAGAAGAATGAGTTACCTGTCATCTGCTATCTGTGGGTATGTTATTGAGGATGTGTCTATACAAGATAATGTCCGCGCTTTAGCTATGGAAGAGCTTGCACCTGTGGCGGTCTTTGATGCAGCAATGCTAGCTCTTGGGGAAGTATTTTCAGGCAAAGGTGATATCAAAGAAGCAGCAGAACTTACACAGGCGGAGAGAAGAAGGAGGAGAGCCAACAAGAAAAGGAAATTTAAAGCTGTGACGGCAAAAAGGATGGTAAAGAAGCCACGAGACGGCAACAAGGACGGTATAGGAGCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

10.01

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 28 - 92 2.6e-11 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 143, 227
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 308
AluBI AGCT 4 cut(s) 119, 130, 167, 272
AluI AGCT 4 cut(s) 119, 130, 167, 272
Alw26I GTCTC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 155, 209
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 206
AsuNHI GCTAGC 1 cut(s) 163
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 167, 221
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 294, 325
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 156, 210
BlsI GCNGC 2 cut(s) 157, 211
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 2 cut(s) 91, 294
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 167, 221
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 300
BsmBI CGTCTC 1 cut(s) 300
BsnI GGCC 1 cut(s) 14
BspACI CCGC 3 cut(s) 109, 143, 227
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 165
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 132, 165
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 91, 294
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 300
BstMWI GCNNNNNNNGC 3 cut(s) 140, 164, 278
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 167, 221
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 91, 294
Cac8I GCNNGC 2 cut(s) 132, 165
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 1 cut(s) 334
CviJI RGCY 8 cut(s) 14, 119, 130, 167, 248, 272, 301, 332
CviKI_1 RGCY 8 cut(s) 14, 119, 130, 167, 248, 272, 301, 332
DdeI CTNAG 1 cut(s) 26
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 242
Eco32I GATATC 1 cut(s) 199
EcoRV GATATC 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 1 cut(s) 337
FaiI YATR 5 cut(s) 75, 95, 122, 326, 335
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 156, 210
FokI GGATG 2 cut(s) 98, 301
Fsp4HI GCNGC 2 cut(s) 156, 210
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 156, 210
HaeIII GGCC 1 cut(s) 14
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 4, 134, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 164, 278
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 111
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 4 cut(s) 65, 150, 171, 209
Lsp1109I GCAGC 2 cut(s) 167, 221
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 47, 274
MboII GAAGA 3 cut(s) 51, 137, 246
MluCI AATT 1 cut(s) 263
MnlI CCTC 2 cut(s) 76, 234
MseI TTAA 1 cut(s) 267
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 140, 164, 278
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 157, 211
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 156, 210
Sau96I GGNCC 1 cut(s) 13
SetI ASST 7 cut(s) 54, 121, 132, 139, 169, 196, 274
SfaNI GCATC 1 cut(s) 142
Sse9I AATT 1 cut(s) 263
SsiI CCGC 3 cut(s) 109, 143, 227
SspMI CTAG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 323
TasI AATT 1 cut(s) 263
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 155, 209
Tsp45I GTSAC 1 cut(s) 274
XapI RAATTY 1 cut(s) 263
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.