MD06G1172400.v1.1

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002128
Physical Location & Seq
Reverse (-)
31253838 .. 31260624
6787 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1172400.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGCGATCAATAGCGATGCCCTGAATTCCCTGAAAGCCACAGAACCGACGCAGCTACTTGCGCCGAACCCGGCCCTCTCTCAAACGGCTCGAGCCGCCCTGCAGGGCATCTTCTCCTCCCTCAGGCCCTTCACGCCCAAGTCGCCGTTCGACCAGCTCCTGGTCGACGGATTCGACGCAGAGCAGATATGGCAGCAAATCGACCTCCAATCTCAGCCCCTCATCTCGACCCTCCGCCGCGATTTGAAGCGGTTTGAGAAGAACCCGGAGGAGATTAAGACGCTGAAGGTGGTCGTGGAAGGGGAGGAGAAGGTTCTGGAAGCTCAGAGCCAGGGTTTGAAGGCTGAAATTGGGGGCTTTGACGAGGAATTGGATGGATTTGACGACGACATTGACGAGGAGGAGGAGGAGGAAGAAGGTGAAGGGAGTGAGAGTGAGGAGAGAGATGGAGAGGAAGAAGAGGAGAGAGAGGAAAGTGAAAGTGAAAGTGAAGGGGAAGATAATAATGCGATAGAGGACGGGTTTTTCAAGATAAAGGATTTGAAGAAGTCTTTGGAGGAAAGTGAAGCAAGGGAATATGGGCTAGATAAGACTGATAAGAAGAAAAAGAAGAGAAGGGATGACGACGACGACGAGGAGGAGGATGAAGAAGATGAGGGGCTTGGAGACTTAGACATTGACGATGATGAGGATGACAAAGACAAGTTTGCAAGATATGAAGACTTCTATGGAGGAAAAAAGGAAAAGCGTTCTACACGAAGATCAAAATTGATTGATGAATCAGAAGATTTGGGGACAAACGACGGAGAAGAAGATGAACAAGACGAGGAGGAAGATGATCAAGATGAAGATGATCAAGAAGAAGGAGATGAAGATGAACAAGAAGATGAGAAGAAGCAAACAACTCTTTCGACCCATGAAAAAAAGCTTAAGAAGCTTCAATCCCAAATAGAAGAGATGGAAAAAGCAAATTTGGAGCCAAAAAGCTGGATCATGCAGGGAGAGGTAACTGCAGCGACAAGGCCAAAGAACAGTGCGCTAGAAGTTGATCTGGATTTTGAGCACAATGTTAGACCTCCCCCTGTAATCACAGAGGAGGTTACAGCATCAATTGAGGATATAATCAAGAAAAGGATTGAGGAGGGGCGGTTTGATGATGTTCAAAAAGCTCCTACTTTACCCTCTAAAGCACCAAGAGAACTTAAAGAGTTGGACGAGAACAAGAGCAAGAAGGGTCTAGCTGATGTCTATGAGGAAGAGTATGTTCAAAAGACAAATTTGGCTTCTGCTCCGTTTTCATTAACAGACAAACAGAAGGACGAGGCAAGCAAGCTGTTCAAGAAACTTTGCTTGAAGTTGGATGCTCTCTCTCATTTCCACTTCAGTCCAAAACCTGTTATCGAGGATATGTCGGTACAAGCCAATGTCCCTGCTCTAGCAATGGAAGAGATTGCACCTGTGGCCGTGTCCGATGCAGCAATGCTAGCTCCTGAGGAAGTGTTTTCCGGCAAAGGTGACATCAAAGAAGAAGCAGAGCTTACACAGGCAGAGAGAAAGCGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

533

Amino Acids

60.54

Weight (kDa)

4.4

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 45 - 528 2.1e-112 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 240
AciI CCGC 6 cut(s) 96, 235, 238, 250, 1147, 1558
AclWI GGATC 1 cut(s) 998
AcoI YGGCCR 1 cut(s) 1461
AcsI RAATTY 4 cut(s) 25, 970, 1276, 1583
AcuI CTGAAG 2 cut(s) 305, 1366
AfaI GTAC 1 cut(s) 1416
AfiI CCNNNNNNNGG 2 cut(s) 123, 160
AflII CTTAAG 1 cut(s) 929
AgsI TTSAA 9 cut(s) 247, 340, 529, 544, 941, 1163, 1268, 1339, 1354
AjnI CCWGG 2 cut(s) 159, 330
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 536, 568
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 998
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 4 cut(s) 72, 125, 1022, 1461
ApeKI GCWGC 4 cut(s) 52, 193, 1013, 1475
ApoI RAATTY 4 cut(s) 25, 970, 1276, 1583
AspLEI GCGC 2 cut(s) 64, 1039
AspS9I GGNCC 2 cut(s) 73, 126
AsuC2I CCSGG 2 cut(s) 71, 266
AsuHPI GGTGA 2 cut(s) 431, 1526
AsuNHI GCTAGC 1 cut(s) 1483
AvaI CYCGRG 1 cut(s) 90
AxyI CCTNAGG 2 cut(s) 122, 1491
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 4 cut(s) 64, 205, 1025, 1487
BccI CCATC 3 cut(s) 368, 440, 952
BceAI ACGGC 3 cut(s) 102, 130, 1448
BciT130I CCWGG 2 cut(s) 161, 332
BclI TGATCA 2 cut(s) 838, 853
BcnI CCSGG 2 cut(s) 71, 266
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 5 cut(s) 584, 1040, 1238, 1436, 1484
BfmI CTRYAG 2 cut(s) 101, 1011
BfrI CTTAAG 1 cut(s) 929
BisI GCNGC 6 cut(s) 53, 96, 194, 238, 1014, 1476
BlsI GCNGC 6 cut(s) 54, 97, 195, 239, 1015, 1477
Bme1390I CCNGG 4 cut(s) 71, 161, 266, 332
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 73, 126
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 4 cut(s) 71, 161, 266, 332
BmsI GCATC 5 cut(s) 7, 117, 1115, 1351, 1462
BmtI GCTAGC 1 cut(s) 1487
BpiI GAAGAC 1 cut(s) 726
BpuMI CCSGG 2 cut(s) 71, 266
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 418, 448, 1133, 1163
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 160
Bse21I CCTNAGG 2 cut(s) 122, 1491
Bse3DI GCAATG 2 cut(s) 1446, 1485
BseBI CCWGG 2 cut(s) 161, 332
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 5 cut(s) 379, 625, 649, 697, 1366
BseLI CCNNNNNNNGG 2 cut(s) 123, 160
BseMI GCAATG 2 cut(s) 1446, 1485
BseMII CTCAG 4 cut(s) 136, 227, 338, 1482
BseXI GCAGC 4 cut(s) 64, 205, 1025, 1487
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 74, 127, 1024, 1463
BsiHKAI GWGCWC 1 cut(s) 1065
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 71, 266, 1506
BslFI GGGAC 2 cut(s) 808, 1412
BslI CCNNNNNNNGG 2 cut(s) 123, 160
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 2 cut(s) 808, 1412
BsnI GGCC 4 cut(s) 74, 127, 1024, 1463
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp143I GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
BspACI CCGC 6 cut(s) 96, 235, 238, 250, 1147, 1558
BspANI GGCC 4 cut(s) 74, 127, 1024, 1463
BspCNI CTCAG 4 cut(s) 135, 226, 337, 1483
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 978
BspMAI CTGCAG 2 cut(s) 105, 1015
BspOI GCTAGC 1 cut(s) 1487
BspPI GGATC 1 cut(s) 998
BspTI CTTAAG 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 1446, 1485
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
Bst2UI CCWGG 2 cut(s) 161, 332
Bst4CI ACNGT 1 cut(s) 1034
Bst6I CTCTTC 5 cut(s) 453, 605, 948, 1251, 1440
BstAFI CTTAAG 1 cut(s) 929
BstC8I GCNNGC 3 cut(s) 1327, 1331, 1485
BstDEI CTNAG 5 cut(s) 122, 213, 324, 670, 1491
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 5 cut(s) 379, 625, 649, 697, 1366
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 2 cut(s) 64, 1039
BstKTI GATC 6 cut(s) 9, 764, 841, 856, 993, 1051
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
BstMWI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
BstNI CCWGG 2 cut(s) 161, 332
BstSCI CCNGG 4 cut(s) 69, 159, 264, 330
BstSFI CTRYAG 2 cut(s) 101, 1011
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 64, 205, 1025, 1487
BstV2I GAAGAC 1 cut(s) 726
BstXI CCANNNNNNTGG 1 cut(s) 987
Bsu36I CCTNAGG 2 cut(s) 122, 1491
BsuRI GGCC 4 cut(s) 74, 127, 1024, 1463
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 5 cut(s) 379, 625, 649, 697, 1366
BtsIMutI CAGTG 1 cut(s) 1039
Cac8I GCNNGC 3 cut(s) 1327, 1331, 1485
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 2 cut(s) 64, 1039
Cfr13I GGNCC 2 cut(s) 73, 126
CseI GACGC 3 cut(s) 58, 185, 289
Csp6I GTAC 1 cut(s) 1415
CviAII CATG 2 cut(s) 917, 994
CviQI GTAC 1 cut(s) 1415
DdeI CTNAG 5 cut(s) 122, 213, 324, 670, 1491
DpnI GATC 6 cut(s) 8, 763, 840, 855, 992, 1050
DpnII GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
DraI TTTAAA 1 cut(s) 1588
EaeI YGGCCR 1 cut(s) 1461
Eam1104I CTCTTC 5 cut(s) 453, 605, 948, 1251, 1440
EarI CTCTTC 5 cut(s) 453, 605, 948, 1251, 1440
EciI GGCGGA 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 305, 1366
Eco81I CCTNAGG 2 cut(s) 122, 1491
Eco88I CYCGRG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 159, 330
FaeI CATG 2 cut(s) 920, 997
FalI AAGNNNNNCTT 2 cut(s) 1521, 1553
FaqI GGGAC 2 cut(s) 808, 1412
FatI CATG 2 cut(s) 916, 993
FbaI TGATCA 2 cut(s) 838, 853
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 6 cut(s) 53, 96, 194, 238, 1014, 1476
FokI GGATG 5 cut(s) 386, 632, 656, 704, 1373
Fsp4HI GCNGC 6 cut(s) 53, 96, 194, 238, 1014, 1476
FspBI CTAG 5 cut(s) 584, 1040, 1238, 1436, 1484
GlaI GCGC 2 cut(s) 63, 1038
GluI GCNGC 6 cut(s) 53, 96, 194, 238, 1014, 1476
HaeIII GGCC 4 cut(s) 74, 127, 1024, 1463
HapII CCGG 3 cut(s) 71, 266, 1506
HgaI GACGC 3 cut(s) 58, 185, 289
HhaI GCGC 2 cut(s) 64, 1039
Hin1II CATG 2 cut(s) 920, 997
Hin6I GCGC 2 cut(s) 62, 1037
HinP1I GCGC 2 cut(s) 62, 1037
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 926, 935
HinfI GANTC 2 cut(s) 171, 779
HpaII CCGG 3 cut(s) 71, 266, 1506
HphI GGTGA 2 cut(s) 431, 1526
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 327, 784, 1471
Hpy188III TCNNGA 9 cut(s) 226, 317, 529, 842, 857, 1052, 1126, 1339, 1490
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 8 cut(s) 52, 170, 179, 389, 629, 632, 635, 806
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4V TGCA 6 cut(s) 103, 710, 997, 1013, 1454, 1475
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
HpyF3I CTNAG 5 cut(s) 122, 213, 324, 670, 1491
Hsp92II CATG 2 cut(s) 920, 997
HspAI GCGC 2 cut(s) 62, 1037
Ksp22I TGATCA 2 cut(s) 838, 853
Kzo9I GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
LmnI GCTCC 5 cut(s) 162, 976, 1174, 1294, 1492
Lsp1109I GCAGC 4 cut(s) 64, 205, 1025, 1487
LweI GCATC 5 cut(s) 7, 117, 1115, 1351, 1462
MaeI CTAG 5 cut(s) 584, 1040, 1238, 1436, 1484
MaeIII GTNAC 3 cut(s) 1006, 1099, 1514
MalI GATC 6 cut(s) 8, 763, 840, 855, 992, 1050
MboI GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
MfeI CAATTG 1 cut(s) 1110
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 8 cut(s) 25, 348, 368, 767, 970, 1110, 1276, 1583
MmeI TCCRAC 2 cut(s) 1191, 1338
MseI TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 3 cut(s) 71, 266, 1506
MspR9I CCNGG 4 cut(s) 71, 161, 266, 332
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 2 cut(s) 161, 332
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
NciI CCSGG 2 cut(s) 71, 266
NdeII GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
NheI GCTAGC 1 cut(s) 1483
NlaIII CATG 2 cut(s) 920, 997
NlaIV GGNNCC 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 1514
PaeR7I CTCGAG 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 393, 630
PfeI GAWTC 2 cut(s) 171, 779
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 6 cut(s) 54, 97, 195, 239, 1015, 1477
Psp6I CCWGG 2 cut(s) 159, 330
PspGI CCWGG 2 cut(s) 159, 330
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 2 cut(s) 73, 126
PspXI VCTCGAGB 1 cut(s) 90
PstI CTGCAG 2 cut(s) 105, 1015
PstNI CAGNNNCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 1416
RsaNI GTAC 1 cut(s) 1415
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
SatI GCNGC 6 cut(s) 53, 96, 194, 238, 1014, 1476
Sau3AI GATC 6 cut(s) 6, 761, 838, 853, 990, 1048
Sau96I GGNCC 2 cut(s) 73, 126
SbfI CCTGCAGG 1 cut(s) 105
ScrFI CCNGG 4 cut(s) 71, 161, 266, 332
SdaI CCTGCAGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 5 cut(s) 7, 117, 1115, 1351, 1462
SfcI CTRYAG 2 cut(s) 101, 1011
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 90, 929
SmoI CTYRAG 2 cut(s) 90, 929
Sse8387I CCTGCAGG 1 cut(s) 105
Sse9I AATT 8 cut(s) 25, 348, 368, 767, 970, 1110, 1276, 1583
SsiI CCGC 6 cut(s) 96, 235, 238, 250, 1147, 1558
SspMI CTAG 5 cut(s) 584, 1040, 1238, 1436, 1484
StyD4I CCNGG 4 cut(s) 69, 159, 264, 330
TaaI ACNGT 1 cut(s) 1034
TaqI TCGA 8 cut(s) 91, 150, 165, 174, 201, 227, 911, 1401
TasI AATT 8 cut(s) 25, 348, 368, 767, 970, 1110, 1276, 1583
TauI GCSGC 2 cut(s) 98, 240
TfiI GAWTC 2 cut(s) 171, 779
Tru1I TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
Tru9I TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 1 cut(s) 1514
TseI GCWGC 4 cut(s) 52, 193, 1013, 1475
Tsp45I GTSAC 1 cut(s) 1514
TspDTI ATGAA 9 cut(s) 660, 732, 792, 831, 861, 885, 891, 933, 1287
TspGWI ACGGA 3 cut(s) 183, 819, 1281
TspRI CASTG 1 cut(s) 1039
Van91I CCANNNNNTGG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 929
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 4 cut(s) 25, 970, 1276, 1583
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 5 cut(s) 584, 1040, 1238, 1436, 1484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.