MD14G1178200.v1.1

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0002128
Physical Location & Seq
Reverse (-)
27090432 .. 27095062
4631 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1178200.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGCGATCAAAACCGACGCCCTGAACTCCCTGAAAGCCACAGAACCGACGCAGCTACTGGCGCCGAGCCCCGCGCTCTCTCAAACGGCTCGAGCCGCCCTGCAGAGCCTCTTCTCCTCCATCAGGCCGTTCACGCCCAAATCGCCGTTCGATCAACTCTTGGTCGACGGATTCGACGCCGAGCAGATATGGCAGCAAATTGACCTCCAATCGCAGCCGCTCATCTCGACCCTCCGCCGCGATTTGAAGCAGCTTGAGAAGAACCCGGACGAGATTAAGACGCTGAAGGTGGTCGTGCAAGGGGAGGAGAAGGTTCTGGAAGCTGGGAACCAGGGTTTGAAGGCGGAAATCGGGGGCTTTGACGAGGAATTGGATGGATTTGACGACGAAGGTGACGACGAGGAGGCGGAGGAGGAAGAGGAAGAAGATGAAGGGAGTGAGAGTGAGGAGGTAGATAGAGAGGATGACGAGGAGAGAGAGGAAAGTGAAAGCGAAGGGGAAGGTAATAATGCGATAGAGGATGGGTTTTTCAAGATAAAGGATTTGAAGAAGTCTTTGGAGGAAAGTGAAGCAATGGAATATGGGCTAGATAAGACCGATAAGAAGAAAAAGAAGAGAGGGGATGACGACGACAATGAAGACGACGAGGATGAAGAAGATGAGGGGCTTGGAGATTTGGCCATTGGCGACGATGAGGATGACAAAGACAAGTTTGCAAGATATGAAGACTTCTATGGAGGAAAAAAGGAAAAGCCTTCTAAACGGAGATCAAAGTTGGTTGATGAATCAGAAGATTTGGGGACAAACGATGGAGAAGAAGATGAAAAAGACGAGGAGGAAGATGATCAAGATGAAGATGATCAAGAAGGAGATGAAAATGAACAAGAAGATGACAAGCAAACAGCCCTTTCGACCCATGAAAAGAAGCTTAAGAAGCTTCAATCCCAAATAGAAGAGATGGAAAAAGCAAATCTGGAGCCAAAAAGCTGGATCATGCAGGGAGAGGTAACTGCAGCGACAAGGCCAAAGAATAGCGCGCTAGAAGTTGATCTGGATTTTGAACACAATGTTAGACCTGCCCCAGTAATCACAGAGGAGGTTACAACATCAATTGAGGATATGATCAAGAAAAGGATCGAGGAGGGGCGGTTTGATGATGTTCAAAAGGCTCCTACTTTACCCTCTAAAGCACCAAGAGAATTTAAAGAGTTGGACGAGAATAAGAGCAAGAAGGGTCTTGCCGACGTCTATGAGGAAGAGTATGTTCAAAAGACGAGTTTGTCTTCTGCTCCATTGTCATTAACAGACAAACAGAAGGACGAGGCAAGCAAGCTGTTCAAGAAACTTTGCTTGAAGTTGGATGCTCTCTCTCATTTCCACTTCACTCCAAAACCTGTTATCGAGGATATGTCGGTACAAGCCAATGTCCCTGCTCTAGCAATGGAAGAGATTGCACCTGTGGCCGTGTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTGTTTTCCGGCAAAGGTGACATCAAAGAAGAAACAGAGCTTACACAGGCAGAGAGAAAGCGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

533

Amino Acids

60.1

Weight (kDa)

4.4

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 17 - 528 1.8e-113 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1279
AatII GACGTC 1 cut(s) 1248
Acc36I ACCTGC 1 cut(s) 1084
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 165
AccII CGCG 3 cut(s) 74, 240, 1037
AciI CCGC 9 cut(s) 72, 96, 218, 235, 238, 344, 407, 1147, 1558
AclWI GGATC 2 cut(s) 998, 1142
AcoI YGGCCR 2 cut(s) 678, 1461
AcsI RAATTY 2 cut(s) 1199, 1583
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 4 cut(s) 18, 62, 177, 1245
AfaI GTAC 1 cut(s) 1416
AfiI CCNNNNNNNGG 1 cut(s) 123
AflII CTTAAG 1 cut(s) 929
AjnI CCWGG 1 cut(s) 330
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 539, 571
AlwI GGATC 2 cut(s) 998, 1142
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 4 cut(s) 125, 678, 1022, 1461
ApeKI GCWGC 6 cut(s) 52, 193, 214, 250, 1013, 1475
ApoI RAATTY 2 cut(s) 1199, 1583
AspLEI GCGC 4 cut(s) 64, 76, 1037, 1039
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 404, 1526
AsuNHI GCTAGC 1 cut(s) 1483
AvaI CYCGRG 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 1491
BalI TGGCCA 1 cut(s) 680
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 3 cut(s) 645, 732, 1275
BbvI GCAGC 6 cut(s) 64, 205, 226, 262, 1025, 1487
BccI CCATC 5 cut(s) 128, 368, 515, 803, 952
BceAI ACGGC 4 cut(s) 102, 112, 130, 1448
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 3 cut(s) 844, 859, 1122
BcnI CCSGG 1 cut(s) 266
BfaI CTAG 4 cut(s) 587, 1040, 1436, 1484
BfmI CTRYAG 2 cut(s) 101, 1011
BfoI RGCGCY 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 1084
BisI GCNGC 9 cut(s) 53, 96, 194, 215, 218, 238, 251, 1014, 1476
BlsI GCNGC 9 cut(s) 54, 97, 195, 216, 219, 239, 252, 1015, 1477
Bme1390I CCNGG 2 cut(s) 266, 332
BmeT110I CYCGRG 1 cut(s) 90
BmiI GGNNCC 4 cut(s) 63, 329, 978, 1170
BmrFI CCNGG 2 cut(s) 266, 332
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 2 cut(s) 1351, 1462
BmtI GCTAGC 1 cut(s) 1487
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 3 cut(s) 645, 732, 1275
BpmI CTGGAG 1 cut(s) 995
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 266
BsaHI GRCGYC 4 cut(s) 18, 62, 177, 1245
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 427, 457, 1133, 1163
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 63, 1082
Bse21I CCTNAGG 1 cut(s) 1491
Bse3DI GCAATG 3 cut(s) 579, 1446, 1485
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 7 cut(s) 379, 469, 526, 628, 655, 703, 1366
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 3 cut(s) 579, 1446, 1485
BseMII CTCAG 1 cut(s) 1482
BseNI ACTGG 2 cut(s) 63, 1082
BsePI GCGCGC 1 cut(s) 1035
BseXI GCAGC 6 cut(s) 64, 205, 226, 262, 1025, 1487
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 3 cut(s) 74, 240, 1037
BshFI GGCC 4 cut(s) 127, 680, 1024, 1463
BshNI GGYRCC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 266, 1506
BslFI GGGAC 2 cut(s) 814, 1412
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 2 cut(s) 814, 1412
BsnI GGCC 4 cut(s) 127, 680, 1024, 1463
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
BspACI CCGC 9 cut(s) 72, 96, 218, 235, 238, 344, 407, 1147, 1558
BspANI GGCC 4 cut(s) 127, 680, 1024, 1463
BspCNI CTCAG 1 cut(s) 1483
BspFNI CGCG 3 cut(s) 74, 240, 1037
BspLI GGNNCC 4 cut(s) 63, 329, 978, 1170
BspMAI CTGCAG 2 cut(s) 105, 1015
BspMI ACCTGC 1 cut(s) 1084
BspOI GCTAGC 1 cut(s) 1487
BspPI GGATC 2 cut(s) 998, 1142
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 929
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 3 cut(s) 579, 1446, 1485
BsrI ACTGG 2 cut(s) 63, 1082
BssECI CCNNGG 1 cut(s) 331
BssHII GCGCGC 1 cut(s) 1035
BssMI GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
BssNI GRCGYC 4 cut(s) 18, 62, 177, 1245
Bst2UI CCWGG 1 cut(s) 332
Bst6I CTCTTC 6 cut(s) 116, 411, 608, 948, 1251, 1440
BstACI GRCGYC 4 cut(s) 18, 62, 177, 1245
BstAFI CTTAAG 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 1037, 1327, 1331, 1485
BstDEI CTNAG 1 cut(s) 1491
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 7 cut(s) 379, 469, 526, 628, 655, 703, 1366
BstFNI CGCG 3 cut(s) 74, 240, 1037
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 4 cut(s) 64, 76, 1037, 1039
BstKTI GATC 9 cut(s) 9, 154, 770, 847, 862, 993, 1051, 1125, 1137
BstMBI GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
BstMWI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 264, 330
BstSFI CTRYAG 2 cut(s) 101, 1011
BstUI CGCG 3 cut(s) 74, 240, 1037
BstV1I GCAGC 6 cut(s) 64, 205, 226, 262, 1025, 1487
BstV2I GAAGAC 3 cut(s) 645, 732, 1275
BstXI CCANNNNNNTGG 1 cut(s) 987
Bsu36I CCTNAGG 1 cut(s) 1491
BsuRI GGCC 4 cut(s) 127, 680, 1024, 1463
BtsCI GGATG 7 cut(s) 379, 469, 526, 628, 655, 703, 1366
BveI ACCTGC 1 cut(s) 1084
Cac8I GCNNGC 4 cut(s) 1037, 1327, 1331, 1485
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 4 cut(s) 64, 76, 1037, 1039
CseI GACGC 4 cut(s) 26, 58, 185, 289
Csp6I GTAC 1 cut(s) 1415
CviAII CATG 2 cut(s) 917, 994
CviQI GTAC 1 cut(s) 1415
DdeI CTNAG 1 cut(s) 1491
DinI GGCGCC 1 cut(s) 63
DpnI GATC 9 cut(s) 8, 153, 769, 846, 861, 992, 1050, 1124, 1136
DpnII GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
DraI TTTAAA 2 cut(s) 1204, 1588
DrdI GACNNNNNNGTC 1 cut(s) 1279
DseDI GACNNNNNNGTC 1 cut(s) 1279
EaeI YGGCCR 2 cut(s) 678, 1461
Eam1104I CTCTTC 6 cut(s) 116, 411, 608, 948, 1251, 1440
EarI CTCTTC 6 cut(s) 116, 411, 608, 948, 1251, 1440
EciI GGCGGA 3 cut(s) 224, 359, 422
Eco24I GRGCYC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 1491
Eco88I CYCGRG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 2 cut(s) 920, 997
FaqI GGGAC 2 cut(s) 814, 1412
FatI CATG 2 cut(s) 916, 993
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 3 cut(s) 844, 859, 1122
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 9 cut(s) 53, 96, 194, 215, 218, 238, 251, 1014, 1476
FokI GGATG 7 cut(s) 386, 476, 533, 635, 662, 710, 1373
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 9 cut(s) 53, 96, 194, 215, 218, 238, 251, 1014, 1476
FspBI CTAG 4 cut(s) 587, 1040, 1436, 1484
GlaI GCGC 4 cut(s) 63, 75, 1036, 1038
GluI GCNGC 9 cut(s) 53, 96, 194, 215, 218, 238, 251, 1014, 1476
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 995
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 4 cut(s) 127, 680, 1024, 1463
HapII CCGG 2 cut(s) 266, 1506
HgaI GACGC 4 cut(s) 26, 58, 185, 289
HhaI GCGC 4 cut(s) 64, 76, 1037, 1039
Hin1I GRCGYC 4 cut(s) 18, 62, 177, 1245
Hin1II CATG 2 cut(s) 920, 997
Hin6I GCGC 4 cut(s) 62, 74, 1035, 1037
HinP1I GCGC 4 cut(s) 62, 74, 1035, 1037
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 926, 935
HinfI GANTC 2 cut(s) 171, 785
HpaII CCGG 2 cut(s) 266, 1506
HphI GGTGA 2 cut(s) 404, 1526
Hpy166II GTNNAC 2 cut(s) 132, 166
Hpy188I TCNGA 2 cut(s) 790, 1471
Hpy8I GTNNAC 2 cut(s) 132, 166
HpyCH4IV ACGT 1 cut(s) 1245
HpyCH4V TGCA 7 cut(s) 103, 298, 716, 997, 1013, 1454, 1475
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
HpyF3I CTNAG 1 cut(s) 1491
HpySE526I ACGT 1 cut(s) 1245
Hsp92I GRCGYC 4 cut(s) 18, 62, 177, 1245
Hsp92II CATG 2 cut(s) 920, 997
HspAI GCGC 4 cut(s) 62, 74, 1035, 1037
KasI GGCGCC 1 cut(s) 61
Ksp22I TGATCA 3 cut(s) 844, 859, 1122
Kzo9I GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
LmnI GCTCC 4 cut(s) 976, 1174, 1294, 1492
Lsp1109I GCAGC 6 cut(s) 64, 205, 226, 262, 1025, 1487
LweI GCATC 2 cut(s) 1351, 1462
MaeI CTAG 4 cut(s) 587, 1040, 1436, 1484
MaeII ACGT 1 cut(s) 1245
MaeIII GTNAC 4 cut(s) 392, 1006, 1099, 1514
MalI GATC 9 cut(s) 8, 153, 769, 846, 861, 992, 1050, 1124, 1136
MbiI CCGCTC 1 cut(s) 220
MboI GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
MfeI CAATTG 1 cut(s) 1110
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 5 cut(s) 198, 368, 1110, 1199, 1583
MluNI TGGCCA 1 cut(s) 680
Mly113I GGCGCC 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 1191, 1338
Mox20I TGGCCA 1 cut(s) 680
MscI TGGCCA 1 cut(s) 680
MseI TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
Msp20I TGGCCA 1 cut(s) 680
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 2 cut(s) 266, 1506
MspR9I CCNGG 2 cut(s) 266, 332
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 3 cut(s) 74, 240, 1037
MwoI GCNNNNNNNGC 8 cut(s) 61, 95, 133, 142, 190, 934, 1460, 1484
NarI GGCGCC 1 cut(s) 62
NciI CCSGG 1 cut(s) 266
NdeII GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
NheI GCTAGC 1 cut(s) 1483
NlaIII CATG 2 cut(s) 920, 997
NlaIV GGNNCC 4 cut(s) 63, 329, 978, 1170
NmeAIII GCCGAG 2 cut(s) 90, 205
NmuCI GTSAC 2 cut(s) 392, 1514
PaeR7I CTCGAG 1 cut(s) 90
PauI GCGCGC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 393
PfeI GAWTC 2 cut(s) 171, 785
PkrI GCNGC 9 cut(s) 54, 97, 195, 216, 219, 239, 252, 1015, 1477
PluTI GGCGCC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 63, 329, 978, 1170
PspXI VCTCGAGB 1 cut(s) 90
PstI CTGCAG 2 cut(s) 105, 1015
PstNI CAGNNNCTG 1 cut(s) 58
PteI GCGCGC 1 cut(s) 1035
RsaI GTAC 1 cut(s) 1416
RsaNI GTAC 1 cut(s) 1415
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
SatI GCNGC 9 cut(s) 53, 96, 194, 215, 218, 238, 251, 1014, 1476
Sau3AI GATC 9 cut(s) 6, 151, 767, 844, 859, 990, 1048, 1122, 1134
ScrFI CCNGG 2 cut(s) 266, 332
SduI GDGCHC 1 cut(s) 71
SfaNI GCATC 2 cut(s) 1351, 1462
SfcI CTRYAG 2 cut(s) 101, 1011
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 3 cut(s) 90, 254, 929
SmoI CTYRAG 3 cut(s) 90, 254, 929
Sse9I AATT 5 cut(s) 198, 368, 1110, 1199, 1583
SsiI CCGC 9 cut(s) 72, 96, 218, 235, 238, 344, 407, 1147, 1558
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 4 cut(s) 587, 1040, 1436, 1484
StyD4I CCNGG 2 cut(s) 264, 330
TaiI ACGT 1 cut(s) 1248
TaqI TCGA 8 cut(s) 91, 150, 165, 174, 227, 911, 1137, 1401
TaqII GACCGA 1 cut(s) 611
TasI AATT 5 cut(s) 198, 368, 1110, 1199, 1583
TauI GCSGC 3 cut(s) 98, 220, 240
TfiI GAWTC 2 cut(s) 171, 785
Tru1I TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
Tru9I TTAA 5 cut(s) 276, 930, 1203, 1301, 1587
TseFI GTSAC 2 cut(s) 392, 1514
TseI GCWGC 6 cut(s) 52, 193, 214, 250, 1013, 1475
Tsp45I GTSAC 2 cut(s) 392, 1514
TspGWI ACGGA 2 cut(s) 183, 778
Vha464I CTTAAG 1 cut(s) 929
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 2 cut(s) 1199, 1583
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 4 cut(s) 587, 1040, 1436, 1484
ZraI GACGTC 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.