Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002284.1

Orthogroup ID

OG0002128

Physical Location & Seq

Genomic Coordinates Reverse (-)

64596 .. 69275

Gene Structure 4680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002284.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgccaataatccggtcatcaggtgagcccatcatcataagtgtgagcccatttttgaattacttggaaaatggagtgagccaagaggaggactgcgaggaattggaggagtctgatgatgatgacgtggcggaaaatgaagaagatgaagatgaggaggaggaggaggaggaggaagaagaagaaaatgtagaagaagaagaggaaggtggaggcaagaacgaaatcgaggatgggctacggaagcagaggaatacgagaatgacaaagaggatgaagaggatgaagaggatgaagaagaagatggtgaagatgaggaggaagaggatgatgcccaggagatatgaagacgtctttgggaaaaagaaactttctacccacgaaaagcagcaactgaaacttaagtccgaaatagagcagagggaaaaggcaaatatggaccccaaaacttggaccatgcggggaaaggtaactgcaactaaaaggccaccgaatagtgcattagaagttgttctagattttgaacacaatgttagacgtgcccctccaatcacagaggaggttacagtagcagttaaggatatgatccggaaaaggatcgagcagaccttgaagctccagaatcaattgggtctgggaggtggagtcggacttagcgacgaagagaacattaaggagcgagcggagtccacgaactcagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Mpp10

Protein Analysis

234

Amino Acids

27.31

Weight (kDa)

4.97

Isoelectric Point (pI)

87.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66540 AT5G66540
fragaria_vesca	FvH4_5g05471 FvH4_5g05471
malus_domestica	MD01G1006000.v1.1 MD06G1172400.v1.1 MD14G1178200.v1.1
prunus_persica	Prupe.5G171700_v2.0.a1 Prupe.5G171700_v2.0.a1
pyrus_communis	pycom06g15350
rosa_chinensis	RchiOBHm_Chr7g0193361
rosa_laevigata	RLG00000004276 RLG00000024925
rosa_multiflora	Rmu_sc0002284.1_g000016
rosa_roxburghii	Rroxscaffold_3G00262180 Rroxscaffold_7G00204760
rosa_rugosa	Rorug03G0051600 Rorug06G0002900 Rorug07G0009200
rosa_samantha	Rh1CG244200 Rh3AG109700 Rh3BG113100 Rh3CG114900 Rh3DG114700 Rh6AG121600 Rh6BG115700 Rh6BG115800 Rh6BG115900 Rh6BG116000 Rh6CG114400 Rh6CG114500 Rh6CG114600 Rh6CG376100 Rh6DG103200 Rh6DG103300 Rh6DG103400 Rh7AG135000 Rh7AG135400 Rh7BG135700 Rh7CG139100 Rh7DG137100
rosa_wichuraiana	Rw6G010490 Rw6G010500 Rw7G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	683
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	3 cut(s)	131, 460, 683
AclWI	GGATC	2 cut(s)	580, 605
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	88, 450
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	58, 524, 613
AjiI	CACGTC	2 cut(s)	127, 539
AjnI	CCWGG	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	1 cut(s)	616
AluI	AGCT	1 cut(s)	616
AlwI	GGATC	2 cut(s)	580, 605
AlwNI	CAGNNNCTG	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	588
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	439, 453
AsuHPI	GGTGA	2 cut(s)	35, 319
AvaII	GGWCC	2 cut(s)	439, 453
BaeGI	GKGCMC	1 cut(s)	544
BanII	GRGCYC	2 cut(s)	30, 50
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	38, 227, 298
BciT130I	CCWGG	1 cut(s)	337
BfaI	CTAG	1 cut(s)	515
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	439, 453
BmgBI	CACGTC	2 cut(s)	127, 539
BmgT120I	GGNCC	2 cut(s)	439, 453
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	2 cut(s)	12, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 450
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	5 cut(s)	238, 279, 288, 297, 333
BseLI	CCNNNNNNNGG	2 cut(s)	88, 450
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	13, 589
BslI	CCNNNNNNNGG	2 cut(s)	88, 450
BsnI	GGCC	1 cut(s)	487
Bsp1286I	GDGCHC	3 cut(s)	30, 50, 544
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	2 cut(s)	585, 597
BspACI	CCGC	3 cut(s)	131, 460, 683
BspANI	GGCC	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	580, 605
BspTI	CTTAAG	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	585, 597
BssNI	GRCGYC	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	5 cut(s)	195, 272, 281, 317, 657
BstACI	GRCGYC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	653, 697
BstF5I	GGATG	5 cut(s)	238, 279, 288, 297, 333
BstKTI	GATC	2 cut(s)	588, 600
BstMBI	GATC	2 cut(s)	585, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	487
BtrI	CACGTC	2 cut(s)	127, 539
BtsCI	GGATG	5 cut(s)	238, 279, 288, 297, 333
Cac8I	GCNNGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	439, 453
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	6 cut(s)	28, 48, 81, 238, 487, 616
CviKI_1	RGCY	6 cut(s)	28, 48, 81, 238, 487, 616
DdeI	CTNAG	2 cut(s)	653, 697
DpnI	GATC	2 cut(s)	587, 599
DpnII	GATC	2 cut(s)	585, 597
Eam1104I	CTCTTC	5 cut(s)	195, 272, 281, 317, 657
EarI	CTCTTC	5 cut(s)	195, 272, 281, 317, 657
EciI	GGCGGA	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	30, 50
Eco47I	GGWCC	2 cut(s)	439, 453
EcoRII	CCWGG	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	30, 50
FaeI	CATG	1 cut(s)	460
FaiI	YATR	5 cut(s)	38, 345, 437, 458, 584
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	5 cut(s)	245, 286, 295, 304, 340
FriOI	GRGCYC	2 cut(s)	30, 50
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	2 cut(s)	13, 589
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	460
HinfI	GANTC	4 cut(s)	110, 622, 645, 686
HpaII	CCGG	2 cut(s)	13, 589
HphI	GGTGA	2 cut(s)	35, 319
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188I	TCNGA	4 cut(s)	115, 409, 650, 700
Hpy188III	TCNNGA	3 cut(s)	515, 589, 619
Hpy8I	GTNNAC	1 cut(s)	690
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	3 cut(s)	126, 351, 538
HpyCH4V	TGCA	2 cut(s)	476, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	653, 697
HpySE526I	ACGT	3 cut(s)	126, 351, 538
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	460
Kpn2I	TCCGGA	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	585, 597
LmnI	GCTCC	2 cut(s)	621, 676
LpnPI	CCDG	7 cut(s)	6, 26, 322, 349, 602, 620, 632
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	3 cut(s)	126, 351, 538
MaeIII	GTNAC	2 cut(s)	469, 562
MalI	GATC	2 cut(s)	587, 599
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	2 cut(s)	585, 597
MfeI	CAATTG	1 cut(s)	626
MhlI	GDGCHC	3 cut(s)	30, 50, 544
MluCI	AATT	3 cut(s)	58, 101, 626
MlyI	GAGTC	3 cut(s)	119, 654, 695
MmeI	TCCRAC	1 cut(s)	628
MroI	TCCGGA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	3 cut(s)	402, 576, 672
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	13, 589
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	2 cut(s)	585, 597
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	3 cut(s)	118, 653, 694
PpsI	GAGTC	3 cut(s)	118, 653, 694
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	439, 453
PstNI	CAGNNNCTG	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	402, 576, 672
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	585, 597
Sau96I	GGNCC	2 cut(s)	439, 453
SchI	GAGTC	3 cut(s)	119, 654, 695
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	30, 50, 544
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	2 cut(s)	439, 453
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	58, 101, 626
SsiI	CCGC	3 cut(s)	131, 460, 683
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	3 cut(s)	129, 354, 541
TaqI	TCGA	2 cut(s)	228, 600
TasI	AATT	3 cut(s)	58, 101, 626
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	402, 576, 672
Tru9I	TTAA	3 cut(s)	402, 576, 672
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	6 cut(s)	153, 162, 290, 299, 308, 360
TspGWI	ACGGA	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	439, 453
XbaI	TCTAGA	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	515
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.