Rh3BG113100

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002128
Physical Location & Seq
Forward (+)
9276220 .. 9277560
1341 bp
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UTR
Exon/CDS
Intron
Rh3BG113100.1

Sequence Viewer

Length: 393 bp
ATGTTATTTTCAGAAGCTGTTTTCCTAGATTCCGGCCCATGGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATCCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTTTTTCTCATTTCCACTTCACTCCAAAACCTGATATGTCTATACAAGATAATGTCTGCGCCCTAGTTATGGAAGAGCATGCACCTGTGGCGGTCTGTGATGAAGCAATGCTGGCTCCTGAGGAAGTATTTTCCGGCAAAGATGATATCAAAGAAGCAGAACTTACACAGGTGGAGAGAAAAAGGAGGACAGCTAACAATAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACGGCAACAAGGACGGCATAGAAGCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

7.71

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 17 - 111 5e-23 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 39, 178, 362
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 3 cut(s) 17, 302, 326
AluI AGCT 3 cut(s) 17, 302, 326
Alw26I GTCTC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 228
BauI CACGAG 1 cut(s) 357
BccI CCATC 1 cut(s) 337
BceAI ACGGC 2 cut(s) 379, 391
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 2 cut(s) 26, 173
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 178, 362
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 44, 112, 348
BseLI CCNNNNNNNGG 3 cut(s) 39, 178, 362
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 33, 243
BslI CCNNNNNNNGG 3 cut(s) 39, 178, 362
BsmAI GTCTC 1 cut(s) 354
BsmBI CGTCTC 1 cut(s) 354
BsnI GGCC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 38
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 189, 222
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 44, 112, 348
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 197, 221, 332
BstNSI RCATGY 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 44, 112, 348
Cac8I GCNNGC 2 cut(s) 189, 222
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 39, 188, 388
CviJI RGCY 7 cut(s) 17, 36, 224, 302, 326, 355, 386
CviKI_1 RGCY 7 cut(s) 17, 36, 224, 302, 326, 355, 386
DdeI CTNAG 1 cut(s) 228
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 38
Eco32I GATATC 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 354
FaeI CATG 3 cut(s) 42, 191, 391
FaiI YATR 7 cut(s) 40, 146, 152, 179, 189, 380, 389
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 3 cut(s) 38, 187, 387
FokI GGATG 3 cut(s) 31, 119, 355
FspBI CTAG 2 cut(s) 26, 173
GlaI GCGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 36
HapII CCGG 2 cut(s) 33, 243
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 42, 191, 391
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 29
HpaII CCGG 2 cut(s) 33, 243
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 85, 227
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 221, 332
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 42, 191, 391
HspAI GCGC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 9 cut(s) 46, 70, 92, 153, 206, 207, 240, 256, 263
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 26, 173
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 2 cut(s) 73, 194
MluCI AATT 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 3 cut(s) 61, 223, 288
MseI TTAA 1 cut(s) 321
MspI CCGG 2 cut(s) 33, 243
MwoI GCNNNNNNNGC 3 cut(s) 197, 221, 332
NcoI CCATGG 1 cut(s) 38
NlaIII CATG 3 cut(s) 42, 191, 391
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 191
PaeI GCATGC 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 35
SetI ASST 6 cut(s) 19, 142, 196, 282, 304, 328
SfaNI GCATC 1 cut(s) 97
SphI GCATGC 1 cut(s) 191
Sse9I AATT 1 cut(s) 317
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 26, 173
StyI CCWWGG 1 cut(s) 38
TasI AATT 1 cut(s) 317
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 191
XspI CTAG 2 cut(s) 26, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.