Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002128

Physical Location & Seq

Genomic Coordinates Reverse (-)

11608391 .. 11612240

Gene Structure 3850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGGCCGGTAGCGAAGCTCTGAACTCCGTGAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGATCAGCTCCTGGTGGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGTGGTTGTGGACGGAGAGGAGAAGGTTCTGGAAGCTGAGAAGGAGGAGGACGGCGAGGAATTCGATGAGGATTTGGAGGAATCTGATGAAGAAGAAGAAGATGATGATGACGACGTGGCGGAATATGAAGAAGAAGAAGAAGCCGAAGATGAGGAGGAGGAGGAGGAAGAAGAAAAGGTAGAAGCAGAAGATGAAGAAGAAGGTGGAGGCAACAATGAAATTGAGGACGGTTTCTTTAATATAAAGGCTTTAGGGAAGTATTTGAAGGCTACAGAAGCAGAGGAATATGAGAATGACAAGGAGGATGAAGAAGAAGATGGTGAAGATAAGGAGGAGGAAGAGGATGATGCTCGGGAGCTCATGAATCTAGGGGAAGCTGAGGACGACGGGGATGGCAAGGATGCAAGATATGAAGACTTCTTTGGGAAAAAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGCGGGGAGAGGTAACTGCAACAAAAAGGCCACCAAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACAAAAGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGCAAGAGTATCTTCAAAAGATGAATGCAGATTCTGGCCCGTTGTCATCCAAAGACAAGCAGAAGAATGAGGTTCATGTTTTAATTTCTGTTGTTTCTATTCTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Mpp10

Protein Analysis

392

Amino Acids

44.91

Weight (kDa)

4.25

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpp10	PF04006	16 - 241	1.7e-22	Mpp10 protein
Mpp10	PF04006	239 - 386	4.5e-47	Mpp10 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66540 AT5G66540
fragaria_vesca	FvH4_5g05471 FvH4_5g05471
malus_domestica	MD01G1006000.v1.1 MD06G1172400.v1.1 MD14G1178200.v1.1
prunus_persica	Prupe.5G171700_v2.0.a1 Prupe.5G171700_v2.0.a1
pyrus_communis	pycom06g15350
rosa_chinensis	RchiOBHm_Chr7g0193361
rosa_laevigata	RLG00000004276 RLG00000024925
rosa_multiflora	Rmu_sc0002284.1_g000016
rosa_roxburghii	Rroxscaffold_3G00262180 Rroxscaffold_7G00204760
rosa_rugosa	Rorug03G0051600 Rorug06G0002900 Rorug07G0009200
rosa_samantha	Rh1CG244200 Rh3AG109700 Rh3BG113100 Rh3CG114900 Rh3DG114700 Rh6AG121600 Rh6BG115700 Rh6BG115800 Rh6BG115900 Rh6BG116000 Rh6CG114400 Rh6CG114500 Rh6CG114600 Rh6CG376100 Rh6DG103200 Rh6DG103300 Rh6DG103400 Rh7AG135000 Rh7AG135400 Rh7BG135700 Rh7CG139100 Rh7DG137100
rosa_wichuraiana	Rw6G010490 Rw6G010500 Rw7G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	942
AclWI	GGATC	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	305, 1080
AcyI	GRCGYC	2 cut(s)	62, 177
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	123, 804
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	6 cut(s)	103, 247, 553, 878, 980, 1085
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	20, 157, 283, 323, 646, 665
AluI	AGCT	6 cut(s)	20, 157, 283, 323, 646, 665
Alw21I	GWGCWC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	934
AlwNI	CAGNNNCTG	4 cut(s)	58, 160, 748, 1103
Ama87I	CYCGRG	3 cut(s)	90, 226, 639
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	4 cut(s)	6, 125, 839, 1105
ApeKI	GCWGC	2 cut(s)	193, 742
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	793, 807, 1106
AsuHPI	GGTGA	1 cut(s)	620
AvaI	CYCGRG	3 cut(s)	90, 226, 639
AvaII	GGWCC	2 cut(s)	793, 807
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	648, 988
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	648
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	205, 754
BccI	CCATC	4 cut(s)	128, 599, 674, 1021
BceAI	ACGGC	3 cut(s)	112, 184, 355
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	3 cut(s)	66, 656, 869
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	755
BisI	GCNGC	6 cut(s)	6, 96, 194, 218, 238, 743
BlsI	GCNGC	6 cut(s)	7, 97, 195, 219, 239, 744
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	793, 807
BmeT110I	CYCGRG	3 cut(s)	90, 226, 639
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	3 cut(s)	793, 807, 1106
BmiI	GGNNCC	4 cut(s)	45, 63, 795, 987
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	625, 679
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	62, 177
BsaWI	WCCGGW	1 cut(s)	942
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 804
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	201
BseGI	GGATG	6 cut(s)	598, 637, 685, 694, 1036, 1115
BseLI	CCNNNNNNNGG	2 cut(s)	123, 804
BseMII	CTCAG	2 cut(s)	315, 657
BseNI	ACTGG	1 cut(s)	1059
BseRI	GAGGAG	9 cut(s)	106, 320, 347, 455, 458, 461, 464, 635, 926
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	205, 754
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	8, 127, 841, 1107
BshNI	GGYRCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	3 cut(s)	90, 226, 639
BsiSI	CCGG	3 cut(s)	9, 266, 943
BslI	CCNNNNNNNGG	2 cut(s)	123, 804
BsmI	GAATGC	1 cut(s)	1099
BsnI	GGCC	4 cut(s)	8, 127, 841, 1107
BsoBI	CYCGRG	3 cut(s)	90, 226, 639
Bsp1286I	GDGCHC	2 cut(s)	648, 988
Bsp13I	TCCGGA	1 cut(s)	942
Bsp143I	GATC	5 cut(s)	151, 273, 865, 903, 939
BspANI	GGCC	4 cut(s)	8, 127, 841, 1107
BspCNI	CTCAG	2 cut(s)	316, 658
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	942
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	45, 63, 795, 987
BspPI	GGATC	1 cut(s)	934
BspT107I	GGYRCC	1 cut(s)	61
BspTI	CTTAAG	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	1059
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	5 cut(s)	151, 273, 865, 903, 939
BssNI	GRCGYC	2 cut(s)	62, 177
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	518, 851, 922
Bst6I	CTCTTC	2 cut(s)	116, 621
BstACI	GRCGYC	2 cut(s)	62, 177
BstAFI	CTTAAG	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	324, 666
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	6 cut(s)	598, 637, 685, 694, 1036, 1115
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	5 cut(s)	154, 276, 868, 906, 942
BstMBI	GATC	5 cut(s)	151, 273, 865, 903, 939
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 133, 142, 190, 237, 563
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	205, 754
BstV2I	GAAGAC	1 cut(s)	708
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	8, 127, 841, 1107
BsuTUI	ATCGAT	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	6 cut(s)	598, 637, 685, 694, 1036, 1115
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	59, 856
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	4 cut(s)	58, 160, 748, 1103
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	793, 807, 1106
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	4 cut(s)	649, 734, 811, 1145
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	324, 666
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	5 cut(s)	153, 275, 867, 905, 941
DpnII	GATC	5 cut(s)	151, 273, 865, 903, 939
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	116, 621
EarI	CTCTTC	2 cut(s)	116, 621
EciI	GGCGGA	3 cut(s)	224, 284, 422
Ecl136II	GAGCTC	1 cut(s)	646
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	648, 988
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	793, 807
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	305, 1080
Eco88I	CYCGRG	3 cut(s)	90, 226, 639
EcoICRI	GAGCTC	1 cut(s)	646
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	648, 988
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaeI	CATG	4 cut(s)	652, 737, 814, 1148
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 1065, 1097
FatI	CATG	4 cut(s)	648, 733, 810, 1144
FauI	CCCGC	2 cut(s)	807, 901
Fnu4HI	GCNGC	6 cut(s)	6, 96, 194, 218, 238, 743
FokI	GGATG	6 cut(s)	605, 644, 692, 701, 1043, 1102
FriOI	GRGCYC	2 cut(s)	648, 988
Fsp4HI	GCNGC	6 cut(s)	6, 96, 194, 218, 238, 743
FspBI	CTAG	3 cut(s)	66, 656, 869
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	6 cut(s)	6, 96, 194, 218, 238, 743
GsaI	CCCAGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	8, 127, 841, 1107
HapII	CCGG	3 cut(s)	9, 266, 943
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	62, 177
Hin1II	CATG	4 cut(s)	652, 737, 814, 1148
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	4 cut(s)	262, 368, 652, 1100
HpaII	CCGG	3 cut(s)	9, 266, 943
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	3 cut(s)	132, 166, 298
Hpy188I	TCNGA	5 cut(s)	24, 82, 373, 763, 903
Hpy188III	TCNNGA	7 cut(s)	226, 277, 317, 641, 649, 869, 943
Hpy8I	GTNNAC	3 cut(s)	132, 166, 298
Hpy99I	CGWCG	4 cut(s)	43, 179, 404, 677
HpyAV	CCTTC	5 cut(s)	280, 304, 322, 482, 547
HpyCH4III	ACNGT	3 cut(s)	518, 851, 922
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	692, 830, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 133, 142, 190, 237, 563
HpyF3I	CTNAG	2 cut(s)	324, 666
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	2 cut(s)	62, 177
Hsp92II	CATG	4 cut(s)	652, 737, 814, 1148
HspAI	GCGC	1 cut(s)	62
KasI	GGCGCC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	942
Kzo9I	GATC	5 cut(s)	151, 273, 865, 903, 939
LmnI	GCTCC	4 cut(s)	43, 162, 643, 991
Lsp1109I	GCAGC	2 cut(s)	205, 754
LweI	GCATC	2 cut(s)	625, 679
MaeI	CTAG	3 cut(s)	66, 656, 869
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	823, 916
MalI	GATC	5 cut(s)	153, 275, 867, 905, 941
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	5 cut(s)	151, 273, 865, 903, 939
MhlI	GDGCHC	2 cut(s)	648, 988
MluCI	AATT	4 cut(s)	242, 347, 507, 1152
Mly113I	GGCGCC	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	942
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	525, 756, 1151
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	3 cut(s)	9, 266, 943
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	1099
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	6 cut(s)	95, 133, 142, 190, 237, 563
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	5 cut(s)	151, 273, 865, 903, 939
NlaIII	CATG	4 cut(s)	652, 737, 814, 1148
NlaIV	GGNNCC	4 cut(s)	45, 63, 795, 987
NmeAIII	GCCGAG	1 cut(s)	205
PaeR7I	CTCGAG	2 cut(s)	90, 226
PagI	TCATGA	1 cut(s)	648
PctI	GAATGC	1 cut(s)	1099
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	262, 368, 652, 1100
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	6 cut(s)	7, 97, 195, 219, 239, 744
PluTI	GGCGCC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	4 cut(s)	45, 63, 795, 987
PspPI	GGNCC	3 cut(s)	793, 807, 1106
PspXI	VCTCGAGB	1 cut(s)	90
PstNI	CAGNNNCTG	4 cut(s)	58, 160, 748, 1103
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	525, 756, 1151
SatI	GCNGC	6 cut(s)	6, 96, 194, 218, 238, 743
Sau3AI	GATC	5 cut(s)	151, 273, 865, 903, 939
Sau96I	GGNCC	3 cut(s)	793, 807, 1106
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	648, 988
SfaNI	GCATC	2 cut(s)	625, 679
SfcI	CTRYAG	1 cut(s)	558
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	2 cut(s)	90, 226
SinI	GGWCC	2 cut(s)	793, 807
SlaI	CTCGAG	2 cut(s)	90, 226
SmlI	CTYRAG	3 cut(s)	90, 226, 755
SmoI	CTYRAG	3 cut(s)	90, 226, 755
Sse9I	AATT	4 cut(s)	242, 347, 507, 1152
SspDI	GGCGCC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	66, 656, 869
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	518, 851, 922
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	6 cut(s)	91, 150, 174, 201, 227, 351
TasI	AATT	4 cut(s)	242, 347, 507, 1152
TauI	GCSGC	4 cut(s)	8, 98, 220, 240
TfiI	GAWTC	4 cut(s)	262, 368, 652, 1100
Tru1I	TTAA	3 cut(s)	525, 756, 1151
Tru9I	TTAA	3 cut(s)	525, 756, 1151
TscAI	CASTG	2 cut(s)	59, 856
TseI	GCWGC	2 cut(s)	193, 742
TspGWI	ACGGA	3 cut(s)	19, 56, 315
TspRI	CASTG	2 cut(s)	59, 856
Van91I	CCANNNNNTGG	1 cut(s)	804
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	793, 807
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	868
XhoI	CTCGAG	2 cut(s)	90, 226
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	3 cut(s)	66, 656, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.