Rh3CG114900

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002128
Physical Location & Seq
Forward (+)
9246583 .. 9248227
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG114900.1

Sequence Viewer

Length: 483 bp
ATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAAGCACCGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAGAGGGACGATAATAAGAACAAGAAAGGTCTGGCTGAAGATTATGAAGTATATTCTGGCCCATGGTCATCCAAAGACAAGCAGAAGAATGAGGCAGAAATCCTGTTCAGGAAACTTTGCTTGAAGTTGGATGCTTTTTCTCATTTCCACTTCACTCCAAAACCTGATATGTCTATACAAGATAATGTCTGCGCCCTAGTTATGGAAGAGCATGCACCTGTGGCGGTCTGTGATGAAGCAATGCAGGCTCCTGAGGAAGTATTTTCCGGCAAAGATGATATCAAAGAAGCAGAACTTACACAGGTGGAGAGAAAAAGGACAGCTAACAATAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACGGCAACAAGGACGGCATAGAAGCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

160

Amino Acids

18.66

Weight (kDa)

8.87

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 15 - 145 1.7e-23 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 271, 452
AgsI TTSAA 2 cut(s) 10, 193
AluBI AGCT 2 cut(s) 392, 416
AluI AGCT 2 cut(s) 392, 416
Alw26I GTCTC 1 cut(s) 444
AoxI GGCC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 321
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 447
BccI CCATC 1 cut(s) 427
BceAI ACGGC 2 cut(s) 469, 481
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 17, 318
BmsI GCATC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 452
Bse21I CCTNAGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 3 cut(s) 137, 205, 438
BseLI CCNNNNNNNGG 2 cut(s) 271, 452
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 271, 452
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 17, 318
BspQI GCTCTTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 131
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 282, 315
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 137, 205, 438
BstHHI GCGC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 444
BstMWI GCNNNNNNNGC 3 cut(s) 290, 314, 422
BstNSI RCATGY 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 3 cut(s) 137, 205, 438
Cac8I GCNNGC 2 cut(s) 282, 315
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 3 cut(s) 132, 281, 478
CviJI RGCY 8 cut(s) 16, 104, 129, 317, 392, 416, 445, 476
CviKI_1 RGCY 8 cut(s) 16, 104, 129, 317, 392, 416, 445, 476
DdeI CTNAG 1 cut(s) 321
DraI TTTAAA 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 135, 284, 481
FaiI YATR 9 cut(s) 114, 121, 133, 239, 245, 272, 282, 470, 479
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 131, 280, 477
FokI GGATG 3 cut(s) 124, 212, 445
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 263
Hin1II CATG 3 cut(s) 135, 284, 481
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HpaII CCGG 1 cut(s) 336
Hpy188III TCNNGA 2 cut(s) 178, 320
HpyCH4V TGCA 2 cut(s) 284, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 314, 422
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 135, 284, 481
HspAI GCGC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 21, 322
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 418
MboII GAAGA 3 cut(s) 119, 166, 287
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 66, 154, 316
MseI TTAA 1 cut(s) 411
MspI CCGG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 290, 314, 422
NcoI CCATGG 1 cut(s) 131
NlaIII CATG 3 cut(s) 135, 284, 481
NlaIV GGNNCC 2 cut(s) 17, 318
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 17, 318
PspPI GGNCC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 411
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 30, 100, 235, 289, 375, 394, 418
SfaNI GCATC 1 cut(s) 190
SphI GCATGC 1 cut(s) 284
Sse9I AATT 1 cut(s) 407
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 131
TasI AATT 1 cut(s) 407
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 129, 318
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 284
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.