Rh7AG135400

U3 small nucleolar ribonucleoprotein protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
10811561 .. 10814861
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG135400.1

Sequence Viewer

Length: 1308 bp
ATGGCGGCCGGTAGCGAAGCTCTGAACTCCGTGAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGATCAGCTCCTGGTGGACGGCTTCGACGCTGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGTGGTTGTGGACGGAGAGGAGAAGGTTCTGGAAGCTGAGAAGGAGGAGGACGGCGAGGAATTCGATGAGGATTTGGAGGAATCTGATGAAGAAGAAGAAGAAGAAGAAGATGATGACGTGGCGGAAAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGAAGATGAGGAGGAGGAGGAGGAAGAAAAGGTAGAAGCAGAAGATGAAGAAGAAGGTGGAGGCAACAATGAAATTGAGGACGGTTTCTTTAATATAAAGGCTTTAGGGAAGTATTTGAAGGCTACAGAAGCAGAGGAATATGAGAATGACAAGGAGGATGAAGAAGAAGATGGTGAAGATAAGGAGGAGGAAGAGGATGATGCTCAGGAGCTCATGAATCTAGGGGAAGCTGAGGACGACGGGGATGGCAAGGATGCAAGATATGAAGACTTCTTTGGGAAAAAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCACAGGGAAAAAGCGAATATGGACCCCAAAACTTGGACCATGCGGGGAGAGGTAACTGCAACAAAAAGGCCACCGAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAAGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCTGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATAGAAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

49.81

Weight (kDa)

4.34

Isoelectric Point (pI)

76.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 16 - 250 6.8e-23 Mpp10 protein
Mpp10 PF04006 248 - 366 2.7e-41 Mpp10 protein
Mpp10 PF04006 366 - 416 1.3e-09 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 831
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 969
AclWI GGATC 1 cut(s) 961
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 347, 1232
AcuI CTGAAG 2 cut(s) 305, 1107
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 123, 831
AflII CTTAAG 1 cut(s) 782
AgsI TTSAA 5 cut(s) 103, 247, 580, 905, 1007
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 9 cut(s) 20, 157, 283, 323, 673, 692, 1136, 1217, 1241
AluI AGCT 9 cut(s) 20, 157, 283, 323, 673, 692, 1136, 1217, 1241
Alw21I GWGCWC 2 cut(s) 675, 801
Alw26I GTCTC 2 cut(s) 1120, 1269
AlwI GGATC 1 cut(s) 961
AlwNI CAGNNNCTG 3 cut(s) 58, 160, 775
Ama87I CYCGRG 2 cut(s) 90, 226
Aor13HI TCCGGA 1 cut(s) 969
AoxI GGCC 3 cut(s) 6, 125, 866
ApeKI GCWGC 3 cut(s) 193, 769, 1124
ApoI RAATTY 2 cut(s) 347, 1232
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 820, 834
AsuHPI GGTGA 2 cut(s) 647, 1175
AsuNHI GCTAGC 1 cut(s) 1132
AvaI CYCGRG 2 cut(s) 90, 226
AvaII GGWCC 2 cut(s) 820, 834
AxyI CCTNAGG 1 cut(s) 1140
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 675, 1015
BauI CACGAG 1 cut(s) 1272
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 2 cut(s) 675, 801
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 205, 781, 1136
BccI CCATC 5 cut(s) 128, 626, 701, 1048, 1252
BceAI ACGGC 3 cut(s) 112, 184, 355
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 1120, 1269
BfaI CTAG 4 cut(s) 66, 683, 896, 1133
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 782
BisI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 770, 1125
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 7 cut(s) 7, 97, 195, 219, 239, 771, 1126
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 820, 834
BmeT110I CYCGRG 2 cut(s) 90, 226
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 820, 834
BmiI GGNNCC 4 cut(s) 45, 63, 822, 1014
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 652, 706, 1111
BmtI GCTAGC 1 cut(s) 1136
BpiI GAAGAC 1 cut(s) 735
Bpu10I CCTNAGC 2 cut(s) 666, 693
Bpu1102I GCTNAGC 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 1120
BsaWI WCCGGW 1 cut(s) 969
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 831
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 1086
Bse21I CCTNAGG 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 1134
BseAI TCCGGA 1 cut(s) 969
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 201
BseGI GGATG 6 cut(s) 625, 664, 712, 721, 1063, 1263
BseLI CCNNNNNNNGG 2 cut(s) 123, 831
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 5 cut(s) 171, 315, 680, 684, 1131
BseNI ACTGG 1 cut(s) 1086
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 205, 781, 1136
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 127, 868
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 675, 801
BsiHKCI CYCGRG 2 cut(s) 90, 226
BsiSI CCGG 3 cut(s) 9, 266, 970
BslI CCNNNNNNNGG 2 cut(s) 123, 831
BsmAI GTCTC 2 cut(s) 1120, 1269
BsnI GGCC 3 cut(s) 8, 127, 868
Bso31I GGTCTC 1 cut(s) 1120
BsoBI CYCGRG 2 cut(s) 90, 226
Bsp1286I GDGCHC 3 cut(s) 675, 801, 1015
Bsp13I TCCGGA 1 cut(s) 969
Bsp143I GATC 5 cut(s) 151, 273, 892, 930, 966
Bsp1720I GCTNAGC 1 cut(s) 180
BspANI GGCC 3 cut(s) 8, 127, 868
BspCNI CTCAG 5 cut(s) 172, 316, 679, 685, 1132
BspDI ATCGAT 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 969
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 45, 63, 822, 1014
BspOI GCTAGC 1 cut(s) 1136
BspPI GGATC 1 cut(s) 961
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 1120
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 1134
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 1086
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 5 cut(s) 151, 273, 892, 930, 966
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 1272
Bst2BI CACGAG 1 cut(s) 1272
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 545, 878, 949
Bst6I CTCTTC 2 cut(s) 116, 648
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 60, 1134
BstDEI CTNAG 5 cut(s) 180, 324, 666, 693, 1140
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 6 cut(s) 625, 664, 712, 721, 1063, 1263
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 5 cut(s) 154, 276, 895, 933, 969
BstMAI GTCTC 2 cut(s) 1120, 1269
BstMBI GATC 5 cut(s) 151, 273, 892, 930, 966
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 590, 1109, 1133, 1247
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 205, 781, 1136
BstV2I GAAGAC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 1140
BsuRI GGCC 3 cut(s) 8, 127, 868
BsuTUI ATCGAT 1 cut(s) 201
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 6 cut(s) 625, 664, 712, 721, 1063, 1263
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 883
Cac8I GCNNGC 2 cut(s) 60, 1134
CaiI CAGNNNCTG 3 cut(s) 58, 160, 775
CciI TCATGA 1 cut(s) 675
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 820, 834
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 676, 761, 838
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 5 cut(s) 180, 324, 666, 693, 1140
DinI GGCGCC 1 cut(s) 63
DpnI GATC 5 cut(s) 153, 275, 894, 932, 968
DpnII GATC 5 cut(s) 151, 273, 892, 930, 966
DraI TTTAAA 1 cut(s) 1237
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 116, 648
EarI CTCTTC 2 cut(s) 116, 648
EciI GGCGGA 4 cut(s) 224, 284, 425, 1211
Ecl136II GAGCTC 1 cut(s) 673
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 675, 1015
Eco31I GGTCTC 1 cut(s) 1120
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 820, 834
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 305, 1107
Eco81I CCTNAGG 1 cut(s) 1140
Eco88I CYCGRG 2 cut(s) 90, 226
EcoICRI GAGCTC 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 675, 1015
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 3 cut(s) 679, 764, 841
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 1170, 1202
FatI CATG 3 cut(s) 675, 760, 837
FauI CCCGC 2 cut(s) 834, 928
FauNDI CATATG 1 cut(s) 1304
Fnu4HI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 770, 1125
FokI GGATG 6 cut(s) 632, 671, 719, 728, 1070, 1270
FriOI GRGCYC 2 cut(s) 675, 1015
Fsp4HI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 770, 1125
FspBI CTAG 4 cut(s) 66, 683, 896, 1133
GlaI GCGC 1 cut(s) 63
GluI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 770, 1125
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 3 cut(s) 8, 127, 868
HapII CCGG 3 cut(s) 9, 266, 970
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 679, 764, 841
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 3 cut(s) 262, 368, 679
HpaII CCGG 3 cut(s) 9, 266, 970
HphI GGTGA 2 cut(s) 647, 1175
Hpy166II GTNNAC 3 cut(s) 132, 166, 298
Hpy188I TCNGA 6 cut(s) 24, 82, 373, 790, 930, 1120
Hpy188III TCNNGA 8 cut(s) 226, 277, 317, 668, 676, 896, 970, 1139
Hpy8I GTNNAC 3 cut(s) 132, 166, 298
Hpy99I CGWCG 3 cut(s) 43, 179, 704
HpyAV CCTTC 5 cut(s) 280, 304, 322, 509, 574
HpyCH4III ACNGT 3 cut(s) 545, 878, 949
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 719, 857, 1103, 1124
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 590, 1109, 1133, 1247
HpyF3I CTNAG 5 cut(s) 180, 324, 666, 693, 1140
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 679, 764, 841
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 969
Kzo9I GATC 5 cut(s) 151, 273, 892, 930, 966
LmnI GCTCC 5 cut(s) 43, 162, 670, 1018, 1141
Lsp1109I GCAGC 3 cut(s) 205, 781, 1136
LweI GCATC 3 cut(s) 652, 706, 1111
MaeI CTAG 4 cut(s) 66, 683, 896, 1133
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 850, 943, 1243
MalI GATC 5 cut(s) 153, 275, 894, 932, 968
MbiI CCGCTC 1 cut(s) 220
MboI GATC 5 cut(s) 151, 273, 892, 930, 966
MhlI GDGCHC 3 cut(s) 675, 801, 1015
MluCI AATT 4 cut(s) 242, 347, 534, 1232
Mly113I GGCGCC 1 cut(s) 62
MroI TCCGGA 1 cut(s) 969
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 4 cut(s) 552, 783, 1170, 1236
MspCI CTTAAG 1 cut(s) 782
MspI CCGG 3 cut(s) 9, 266, 970
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 9 cut(s) 95, 133, 142, 190, 237, 590, 1109, 1133, 1247
NarI GGCGCC 1 cut(s) 62
NdeI CATATG 1 cut(s) 1304
NdeII GATC 5 cut(s) 151, 273, 892, 930, 966
NheI GCTAGC 1 cut(s) 1132
NlaIII CATG 3 cut(s) 679, 764, 841
NlaIV GGNNCC 4 cut(s) 45, 63, 822, 1014
NmuCI GTSAC 1 cut(s) 1243
PaeR7I CTCGAG 2 cut(s) 90, 226
PagI TCATGA 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 262, 368, 679
PflMI CCANNNNNTGG 1 cut(s) 831
PkrI GCNGC 7 cut(s) 7, 97, 195, 219, 239, 771, 1126
PluTI GGCGCC 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 45, 63, 822, 1014
PspPI GGNCC 2 cut(s) 820, 834
PspXI VCTCGAGB 1 cut(s) 90
PstNI CAGNNNCTG 3 cut(s) 58, 160, 775
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 4 cut(s) 552, 783, 1170, 1236
SatI GCNGC 7 cut(s) 6, 96, 194, 218, 238, 770, 1125
Sau3AI GATC 5 cut(s) 151, 273, 892, 930, 966
Sau96I GGNCC 2 cut(s) 820, 834
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 3 cut(s) 675, 801, 1015
SfaNI GCATC 3 cut(s) 652, 706, 1111
SfcI CTRYAG 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 2 cut(s) 90, 226
SinI GGWCC 2 cut(s) 820, 834
SlaI CTCGAG 2 cut(s) 90, 226
SmlI CTYRAG 3 cut(s) 90, 226, 782
SmoI CTYRAG 3 cut(s) 90, 226, 782
Sse9I AATT 4 cut(s) 242, 347, 534, 1232
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 4 cut(s) 66, 683, 896, 1133
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 545, 878, 949
TaiI ACGT 1 cut(s) 408
TaqI TCGA 6 cut(s) 91, 150, 174, 201, 227, 351
TasI AATT 4 cut(s) 242, 347, 534, 1232
TauI GCSGC 4 cut(s) 8, 98, 220, 240
TfiI GAWTC 3 cut(s) 262, 368, 679
Tru1I TTAA 4 cut(s) 552, 783, 1170, 1236
Tru9I TTAA 4 cut(s) 552, 783, 1170, 1236
TscAI CASTG 2 cut(s) 59, 883
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 3 cut(s) 193, 769, 1124
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 8 cut(s) 390, 432, 522, 546, 636, 692, 741, 777
TspGWI ACGGA 3 cut(s) 19, 56, 315
TspRI CASTG 2 cut(s) 59, 883
Van91I CCANNNNNTGG 1 cut(s) 831
Vha464I CTTAAG 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 820, 834
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 2 cut(s) 347, 1232
XbaI TCTAGA 1 cut(s) 895
XhoI CTCGAG 2 cut(s) 90, 226
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 4 cut(s) 66, 683, 896, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.