Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010875

Physical Location & Seq

Genomic Coordinates Forward (+)

11298501 .. 11304928

Gene Structure 6428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGGAGAGAGCAGAGACTACGACTATCGAGTGCGATCGGAAATCGGACGGCGATGCGTCAACGGCGTCGCCTCCGTCGCGGTACTCGTCGTTCGGCGAGTCCGAGTACGAGCGCTATTGCAGCGCCAACTCGGTCATGGGCACGCCGAGCATGTGTAGCACAGTCACGGTTTTCAATGATTTTCCGGAGGCTGATTTCGCGTCGGTCAGGAGTTTAGGGTTTGGGGAGGAAGGCGGTGGTGTCGAGGGTTTCAGTTTGGGAGGGAGGATTGATAGGAATAGTAATCGAGAGGATCGGAGACTTTCGAGTAGTGGTAGGAGTGAGGAAGATGGTATTAGAGGGCGTCCGGGTACTAAGTATGGGTCTAGTGGGTTGGAGTTGTATGGGAATGAGGATGATGATATTGGAGTTGGTGGTGATGCAAATGAGTTGATGTCTTGGAAGCTTGACAAGAGTGGACCGCCGGGTTTAATGGAAGGTTCGGAGTTGAAGTGTGGTTCAGATGATAGTGATGAGGAGAATGAGGAAGGCAGGGGAGTGGAGAGAGGGAAAGATTGTGTGTTGGATCGAGACGATTCACAAGAGGTTGGAACTGGTTCTCAGCTTGGACCGGAAGTTGAGCAGAGATGTTTTGATGTAGGAGAGATGGAGAGGGAAGAAGGAGCGTCGTCTAGAAATGAGTATTCCGAGGATGAGGGGTCCATGTACAACTACGGTACACATGATGAGTCTAAGAGTGACTTTAATCATCAGAGGAGTGTAGAGTACTACTATGAGCAATCAAAACCAAAGAATGAAAATGAGAATCCATTTCTTATGAATTCATCTGTAGCCTTTGGTTCTGATGATTGGGATGATTTTGTGCAAGAGAGTGAACGGAGTAATATAGCTTCTTTCACTAGGAGTGCATTCCAGGAGCAGATAGAACTGAATGTGGAAACTGAAAAGAAAGTTTTGAATTCTGGTTCTGTCACTTCACATCAGGGTACATGTCAAACTGAGCAAGGGAAGGATGTGGCTGACATGCCCAGAGGTAGCGAACACGTTGAAGCTGATAACAATCTGGCAGAAAGTGTTAAACGTTCCCGAGAACCAGCTAAGTCTCCAAATTTTGTTGAACCAGAGGGAGTAGAAGATGTGAAGGACATTCCTGTGGCCAATTATCAGGTGCAAGCTATTGTGGACTTGACTGAATTTACCAAAAGTTCTTTTACCACCCCAACTGGTTTTCAAAATGTTCAAGAACCAGAGCAGGAAGATTCGAAAGACATTGTATTGACCAAGAATAAAGATCCAGGTCCTGACGAATCAGCAAATTATCCTCAAGCTTCGTTGTCTGGCAATTTCTCCAAAATACAGCTCGATTCAGAAGCAAAAAAAGCTCCCGAGGAAAAGGGTTTCAACATTGTGGTTGACGACATATCTGATATGCATACGTGTAATAATACTGAGGTCACTGGGATTGATGATGGTCAAGATTTAGGAAATAAAAATTTGGGGAAGATAAAAGTTAAACTGGACCCCCTTTCTGAGATATCAACCGATCAACTGAGTATCCATTCAACTGGACCTCCTGGAAGTATGAAGGCAGAATTCTTTGAAGACCTTGAGCCAAATACGCGAACCTTAACTTTTGAAAATAATATGACGAAAAATGCTCCTGTTTCAGAAGATATTTTTGAAGAATATCCTATGCCACTTAAGACAGATAATTTTGAGCTAAATGAATTCTATGATGAGTTTGTTAATGACATGGAAGAAATATTGCTAGACTCTGCGGAGTCCCCAGGAGCAAGGTTCAGTCATGGTAACAGGAACTTACAATCACAACTATCTTTACCATTAAGAGATGGTGGATCGACTGCTTCTACTTCTGGTACAGATGATGCTTACCTGTTTAATCAGCATTCCCTCATAATTGACGGGGTCGAAGTGGTGGGTGCAAAGCAGAAGAAGGGAGATGTCACCTTTAGTGAAAGACTGGTAGGAGTGAAGGAATACACTGTTTATAAAATGAGAGTGTGGAGTGGCAAGGATCAATGGGAGGTTGAACGTCGGTATCGTGATTTCTTTACACTCTACCGTCGGTTGAAAACATTGTTTGCTGACCATGGATGGAATCTACCTTCTCCCTGGTCTGCTGTAGAAAAGGAATCCAGAAAGATTTTTGGAAATGCATCTCCTGATGTTATTGCACAGAGAAGCGTTCTCATTCAAGAGTGTCTACAGTCCATTCTCCATTATAGATTCTTTTCGAGTCCTCCAAGTGCATTGATTTGGTTTCTGTCTCCTCAAGATTCATTTCCTACCTCCATGTCCTCAAATACACCTGATCCTATTAATAGAAGGGCAGACACAGAAAATGTGTCCACTTTAGGAAAGACGATATCACTTATTGTTGAAGTTCGACCATACAAATCTTTGAAGCAGATTCTAGAAGCACAACATTATATGTGTGCTGGATGCCACAAACATTTTGACGATGGAAAGACCCTGATACTGGATTTTGCAGAGACATTTGGATGGGGCAAGCCTCGATTGTGTGAATATACAGGTCAATTATTTTGCTCTTCGTGCCATACGAATGAGACTGCGGTCATACCAGCAAGAGTATTGCATCACTGGGATTTTACTCAATATTCAGTGTCACAGTTAGCTAAATCTTATCTCGATTCTATACATGACCAGCCAATGCTATGTGTCAGTGCAGTTAATCCATTCCTTTTCTCAAAGGTCCCAGCCTTGCTTCATGTTATGGGTGTTAGGAAGAAAATAGGCGCCATGCTTCCATATGTTCGTTGCCCTTTCCGCAGGTCAATCAACAAAGGTCTTGGGTCTAGAAAATATCTTCTCGAAGGCAATGATTTTTTTGCACTGAGAGACCTCATTGATCTTTCAAAAGGAGCCTTTGCAGTGCTGCCTGTGATGGTGGAAACCGTGTTGAGTAAAATTTGTGGGCATATCACAGAGCAGTGTCTCATATGCTGTGATGTGGGAGTTCCCTGTGGTGCACGACAAGCATGCAATGACCCTTCATCTCTCATTTTCCCTTTCCAGGTGGGGCATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009987 GO:0012505 GO:0030154 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045445 GO:0048856 GO:0048869 GO:0061061

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

PX zf-RING_9

Protein Analysis

1023

Amino Acids

113.79

Weight (kDa)

4.73

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	675 - 763	1.6e-06	PX domain
RH_dom	PF13901	846 - 1020	4.6e-44	Rubicon Homology Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48195
fragaria_vesca	FvH4_5g05470 FvH4_5g05470 FvH4_5g05470
malus_domestica	MD06G1172500.v1.1 MD14G1178400.v1.1
prunus_persica	Prupe.5G171800_v2.0.a1 Prupe.5G171800_v2.0.a1
pyrus_communis	pycom06g15360 pycom14g14870
rosa_chinensis	RchiOBHm_Chr7g0193371
rosa_laevigata	RLG00000004275
rosa_multiflora	Rmu_co8475531.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262170
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135500 Rh7BG135800 Rh7CG139200 Rh7DG137200
rosa_wichuraiana	Rw7G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2010
Acc36I	ACCTGC	1 cut(s)	2802
AccB1I	GGYRCC	1 cut(s)	2777
AccI	GTMKAC	1 cut(s)	2224
AccII	CGCG	3 cut(s)	79, 200, 1621
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	6 cut(s)	79, 234, 461, 1778, 2594, 2809
AclI	AACGTT	1 cut(s)	1081
AclWI	GGATC	6 cut(s)	300, 573, 1286, 1864, 2043, 2327
AcoI	YGGCCR	1 cut(s)	1155
AcsI	RAATTY	8 cut(s)	820, 958, 1108, 1193, 1492, 1592, 1727, 2949
AcyI	GRCGYC	3 cut(s)	65, 343, 2778
AfaI	GTAC	8 cut(s)	83, 107, 352, 707, 718, 767, 988, 1879
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	2500, 3055
AflII	CTTAAG	1 cut(s)	1700
AflIII	ACRYGT	3 cut(s)	989, 1042, 1436
AjnI	CCWGG	6 cut(s)	912, 1294, 1573, 1786, 2132, 3054
Alw21I	GWGCWC	1 cut(s)	3013
Alw26I	GTCTC	9 cut(s)	8, 292, 564, 1107, 2292, 2507, 2582, 2874, 2981
Alw44I	GTGCAC	1 cut(s)	3009
AlwI	GGATC	6 cut(s)	300, 573, 1286, 1864, 2043, 2327
AlwNI	CAGNNNCTG	1 cut(s)	1301
Ama87I	CYCGRG	2 cut(s)	1086, 1385
Aor13HI	TCCGGA	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	1155
ApaLI	GTGCAC	1 cut(s)	3009
ApeKI	GCWGC	2 cut(s)	120, 2917
ApoI	RAATTY	8 cut(s)	820, 958, 1108, 1193, 1492, 1592, 1727, 2949
AseI	ATTAAT	1 cut(s)	2340
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	3 cut(s)	114, 125, 2780
AspS9I	GGNCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
AsuC2I	CCSGG	2 cut(s)	348, 465
AsuHPI	GGTGA	2 cut(s)	428, 1957
AsuII	TTCGAA	1 cut(s)	1262
AvaI	CYCGRG	2 cut(s)	1086, 1385
AvaII	GGWCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
BaeGI	GKGCMC	2 cut(s)	143, 3013
BaeI	ACNNNNGTAYC	2 cut(s)	2042, 2075
BalI	TGGCCA	1 cut(s)	1157
BanI	GGYRCC	1 cut(s)	2777
BarI	GAAGNNNNNNTAC	2 cut(s)	874, 906
BbsI	GAAGAC	1 cut(s)	1608
Bbv12I	GWGCWC	1 cut(s)	3013
BbvI	GCAGC	2 cut(s)	132, 2904
BccI	CCATC	8 cut(s)	323, 640, 1463, 1844, 2109, 2477, 2517, 2920
BceAI	ACGGC	2 cut(s)	64, 78
BcgI	CGANNNNNNTGC	2 cut(s)	3003, 3037
BciT130I	CCWGG	6 cut(s)	914, 1296, 1575, 1788, 2134, 3056
BciVI	GTATCC	1 cut(s)	1565
BcnI	CCSGG	2 cut(s)	348, 465
BcoDI	GTCTC	9 cut(s)	8, 292, 564, 1107, 2292, 2507, 2582, 2874, 2981
BfaI	CTAG	7 cut(s)	366, 672, 900, 1769, 2435, 2838, 3070
BfmI	CTRYAG	3 cut(s)	828, 2142, 2225
BfoI	RGCGCY	3 cut(s)	115, 126, 2781
BfrI	CTTAAG	1 cut(s)	1700
BfuAI	ACCTGC	1 cut(s)	2802
BfuI	GTATCC	1 cut(s)	1565
BisI	GCNGC	2 cut(s)	121, 2918
BlsI	GCNGC	2 cut(s)	122, 2919
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	8 cut(s)	348, 465, 914, 1296, 1575, 1788, 2134, 3056
Bme18I	GGWCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
BmeT110I	CYCGRG	2 cut(s)	1086, 1385
BmgT120I	GGNCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
BmiI	GGNNCC	5 cut(s)	700, 1521, 2736, 2779, 2905
BmrFI	CCNGG	8 cut(s)	348, 465, 914, 1296, 1575, 1788, 2134, 3056
BmrI	ACTGGG	2 cut(s)	1467, 2632
BmsI	GCATC	6 cut(s)	43, 409, 1876, 2186, 2453, 2626
BmuI	ACTGGG	2 cut(s)	1467, 2632
BoxI	GACNNNNGTC	1 cut(s)	2594
BpiI	GAAGAC	1 cut(s)	1608
Bpu14I	TTCGAA	1 cut(s)	1262
BpuEI	CTTGAG	3 cut(s)	1308, 1628, 2277
BpuMI	CCSGG	2 cut(s)	348, 465
BsaAI	YACGTR	1 cut(s)	1437
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaHI	GRCGYC	3 cut(s)	65, 343, 2778
BsaI	GGTCTC	1 cut(s)	2874
BsaJI	CCNNGG	5 cut(s)	687, 1386, 1786, 2110, 2132
BsaWI	WCCGGW	2 cut(s)	184, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	476, 506, 1555, 1585
Bsc4I	CCNNNNNNNGG	2 cut(s)	2500, 3055
Bse1I	ACTGG	8 cut(s)	598, 1228, 1462, 1521, 1570, 1986, 2505, 2627
Bse3DI	GCAATG	2 cut(s)	2866, 3031
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	6 cut(s)	914, 1296, 1575, 1788, 2134, 3056
BseDI	CCNNGG	5 cut(s)	687, 1386, 1786, 2110, 2132
BseGI	GGATG	8 cut(s)	400, 697, 859, 1018, 2120, 2468, 2528, 3064
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	2 cut(s)	2500, 3055
BseMI	GCAATG	2 cut(s)	2866, 3031
BseMII	CTCAG	6 cut(s)	614, 990, 1440, 1521, 1541, 2867
BseNI	ACTGG	8 cut(s)	598, 1228, 1462, 1521, 1570, 1986, 2505, 2627
BseRI	GAGGAG	3 cut(s)	530, 769, 2280
BseSI	GKGCMC	2 cut(s)	143, 3013
BseXI	GCAGC	2 cut(s)	132, 2904
BseYI	CCCAGC	1 cut(s)	2737
BsgI	GTGCAG	1 cut(s)	2727
Bsh1236I	CGCG	3 cut(s)	79, 200, 1621
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	1157
BshNI	GGYRCC	1 cut(s)	2777
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	3013
BsiHKCI	CYCGRG	2 cut(s)	1086, 1385
BsiSI	CCGG	4 cut(s)	185, 347, 464, 611
BslFI	GGGAC	2 cut(s)	1768, 2720
BslI	CCNNNNNNNGG	2 cut(s)	2500, 3055
BsmAI	GTCTC	9 cut(s)	8, 292, 564, 1107, 2292, 2507, 2582, 2874, 2981
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	2 cut(s)	1768, 2720
BsmI	GAATGC	2 cut(s)	908, 1906
BsnI	GGCC	1 cut(s)	1157
Bso31I	GGTCTC	1 cut(s)	2874
BsoBI	CYCGRG	2 cut(s)	1086, 1385
Bsp119I	TTCGAA	1 cut(s)	1262
Bsp1286I	GDGCHC	2 cut(s)	143, 3013
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
Bsp19I	CCATGG	1 cut(s)	2110
BspACI	CCGC	6 cut(s)	79, 234, 461, 1778, 2594, 2809
BspANI	GGCC	1 cut(s)	1157
BspCNI	CTCAG	6 cut(s)	613, 991, 1441, 1522, 1542, 2868
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	79, 200, 1621
BspLI	GGNNCC	5 cut(s)	700, 1521, 2736, 2779, 2905
BspMI	ACCTGC	1 cut(s)	2802
BspPI	GGATC	6 cut(s)	300, 573, 1286, 1864, 2043, 2327
BspQI	GCTCTTC	1 cut(s)	2575
BspT104I	TTCGAA	1 cut(s)	1262
BspT107I	GGYRCC	1 cut(s)	2777
BspTI	CTTAAG	1 cut(s)	1700
BspTNI	GGTCTC	1 cut(s)	2874
BsrDI	GCAATG	2 cut(s)	2866, 3031
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	8 cut(s)	598, 1228, 1462, 1521, 1570, 1986, 2505, 2627
BssECI	CCNNGG	5 cut(s)	687, 1386, 1786, 2110, 2132
BssMI	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
BssNI	GRCGYC	3 cut(s)	65, 343, 2778
BssT1I	CCWWGG	1 cut(s)	2110
Bst2UI	CCWGG	6 cut(s)	914, 1296, 1575, 1788, 2134, 3056
Bst4CI	ACNGT	8 cut(s)	163, 169, 716, 2005, 2084, 2229, 2652, 2938
Bst6I	CTCTTC	1 cut(s)	2575
BstACI	GRCGYC	3 cut(s)	65, 343, 2778
BstAFI	CTTAAG	1 cut(s)	1700
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	1437
BstBI	TTCGAA	1 cut(s)	1262
BstC8I	GCNNGC	4 cut(s)	143, 1173, 2531, 3022
BstDEI	CTNAG	9 cut(s)	354, 600, 732, 999, 1098, 1449, 1530, 1550, 2876
BstDSI	CCRYGG	1 cut(s)	2110
BstF5I	GGATG	8 cut(s)	400, 697, 859, 1018, 2120, 2468, 2528, 3064
BstFNI	CGCG	3 cut(s)	79, 200, 1621
BstH2I	RGCGCY	3 cut(s)	115, 126, 2781
BstHHI	GCGC	3 cut(s)	114, 125, 2780
BstKTI	GATC	9 cut(s)	37, 295, 568, 1294, 1546, 1859, 2038, 2335, 2893
BstMAI	GTCTC	9 cut(s)	8, 292, 564, 1107, 2292, 2507, 2582, 2874, 2981
BstMBI	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
BstMCI	CGRYCG	1 cut(s)	37
BstNI	CCWGG	6 cut(s)	914, 1296, 1575, 1788, 2134, 3056
BstNSI	RCATGY	4 cut(s)	154, 993, 1027, 3024
BstPAI	GACNNNNGTC	1 cut(s)	2594
BstSCI	CCNGG	8 cut(s)	346, 463, 912, 1294, 1573, 1786, 2132, 3054
BstSFI	CTRYAG	3 cut(s)	828, 2142, 2225
BstSLI	GKGCMC	2 cut(s)	143, 3013
BstUI	CGCG	3 cut(s)	79, 200, 1621
BstV1I	GCAGC	2 cut(s)	132, 2904
BstV2I	GAAGAC	1 cut(s)	1608
BstX2I	RGATCY	1 cut(s)	1291
BstXI	CCANNNNNNTGG	1 cut(s)	1565
BstYI	RGATCY	1 cut(s)	1291
BsuI	GTATCC	1 cut(s)	1565
BsuRI	GGCC	1 cut(s)	1157
BtgI	CCRYGG	1 cut(s)	2110
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	8 cut(s)	400, 697, 859, 1018, 2120, 2468, 2528, 3064
BtsI	GCAGTG	2 cut(s)	2919, 2978
BtsIMutI	CAGTG	8 cut(s)	1455, 2001, 2620, 2649, 2710, 2873, 2919, 2978
BveI	ACCTGC	1 cut(s)	2802
Cac8I	GCNNGC	4 cut(s)	143, 1173, 2531, 3022
CaiI	CAGNNNCTG	1 cut(s)	1301
CfoI	GCGC	3 cut(s)	114, 125, 2780
Cfr13I	GGNCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
CseI	GACGC	5 cut(s)	45, 54, 189, 332, 654
Csp6I	GTAC	8 cut(s)	82, 106, 351, 706, 717, 766, 987, 1878
CviQI	GTAC	8 cut(s)	82, 106, 351, 706, 717, 766, 987, 1878
DdeI	CTNAG	9 cut(s)	354, 600, 732, 999, 1098, 1449, 1530, 1550, 2876
DinI	GGCGCC	1 cut(s)	2779
DpnI	GATC	9 cut(s)	36, 294, 567, 1293, 1545, 1858, 2037, 2334, 2892
DpnII	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
EaeI	YGGCCR	1 cut(s)	1155
Eam1104I	CTCTTC	1 cut(s)	2575
EarI	CTCTTC	1 cut(s)	2575
Eco130I	CCWWGG	1 cut(s)	2110
Eco31I	GGTCTC	1 cut(s)	2874
Eco32I	GATATC	2 cut(s)	1536, 2388
Eco47I	GGWCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
Eco47III	AGCGCT	1 cut(s)	113
Eco88I	CYCGRG	2 cut(s)	1086, 1385
EcoO109I	RGGNCCY	2 cut(s)	1298, 2734
EcoRI	GAATTC	4 cut(s)	820, 958, 1592, 1727
EcoRII	CCWGG	6 cut(s)	912, 1294, 1573, 1786, 2132, 3054
EcoRV	GATATC	2 cut(s)	1536, 2388
EcoT14I	CCWWGG	1 cut(s)	2110
EcoT22I	ATGCAT	2 cut(s)	1434, 2179
EgeI	GGCGCC	1 cut(s)	2779
EheI	GGCGCC	1 cut(s)	2779
ErhI	CCWWGG	1 cut(s)	2110
Esp3I	CGTCTC	1 cut(s)	564
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	2 cut(s)	1768, 2720
FauNDI	CATATG	2 cut(s)	2791, 2981
FblI	GTMKAC	1 cut(s)	2224
Fnu4HI	GCNGC	2 cut(s)	121, 2918
FokI	GGATG	8 cut(s)	407, 704, 866, 1025, 2127, 2475, 2535, 3051
Fsp4HI	GCNGC	2 cut(s)	121, 2918
FspBI	CTAG	7 cut(s)	366, 672, 900, 1769, 2435, 2838, 3070
GlaI	GCGC	3 cut(s)	113, 124, 2779
GluI	GCNGC	2 cut(s)	121, 2918
GsaI	CCCAGC	1 cut(s)	2741
HaeII	RGCGCY	3 cut(s)	115, 126, 2781
HaeIII	GGCC	1 cut(s)	1157
HapII	CCGG	4 cut(s)	185, 347, 464, 611
HgaI	GACGC	5 cut(s)	45, 54, 189, 332, 654
HhaI	GCGC	3 cut(s)	114, 125, 2780
Hin1I	GRCGYC	3 cut(s)	65, 343, 2778
Hin6I	GCGC	3 cut(s)	112, 123, 2778
HinP1I	GCGC	3 cut(s)	112, 123, 2778
HincII	GTYRAC	2 cut(s)	60, 1414
HindII	GTYRAC	2 cut(s)	60, 1414
HindIII	AAGCTT	2 cut(s)	443, 1326
HpaII	CCGG	4 cut(s)	185, 347, 464, 611
HphI	GGTGA	2 cut(s)	428, 1957
Hpy166II	GTNNAC	9 cut(s)	60, 458, 719, 875, 1183, 1414, 2225, 2370, 3011
Hpy8I	GTNNAC	9 cut(s)	60, 458, 719, 875, 1183, 1414, 2225, 2370, 3011
Hpy99I	CGWCG	7 cut(s)	70, 79, 91, 205, 670, 2058, 2088
HpyCH4III	ACNGT	8 cut(s)	163, 169, 716, 2005, 2084, 2229, 2652, 2938
HpyCH4IV	ACGT	4 cut(s)	1044, 1081, 1436, 2053
HpyF3I	CTNAG	9 cut(s)	354, 600, 732, 999, 1098, 1449, 1530, 1550, 2876
HpySE526I	ACGT	4 cut(s)	1044, 1081, 1436, 2053
Hsp92I	GRCGYC	3 cut(s)	65, 343, 2778
HspAI	GCGC	3 cut(s)	112, 123, 2778
KasI	GGCGCC	1 cut(s)	2777
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
LguI	GCTCTTC	1 cut(s)	2575
LmnI	GCTCC	6 cut(s)	662, 916, 1387, 1663, 1790, 2903
Lsp1109I	GCAGC	2 cut(s)	132, 2904
LweI	GCATC	6 cut(s)	43, 409, 1876, 2186, 2453, 2626
MaeI	CTAG	7 cut(s)	366, 672, 900, 1769, 2435, 2838, 3070
MaeII	ACGT	4 cut(s)	1044, 1081, 1436, 2053
MaeIII	GTNAC	7 cut(s)	163, 737, 970, 1453, 1808, 1963, 2646
MalI	GATC	9 cut(s)	36, 294, 567, 1293, 1545, 1858, 2037, 2334, 2892
MboI	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
MflI	RGATCY	1 cut(s)	1291
MhlI	GDGCHC	2 cut(s)	143, 3013
MlsI	TGGCCA	1 cut(s)	1157
MluNI	TGGCCA	1 cut(s)	1157
Mly113I	GGCGCC	1 cut(s)	2778
MlyI	GAGTC	5 cut(s)	107, 737, 1766, 1790, 2266
MmeI	TCCRAC	3 cut(s)	354, 543, 568
Mox20I	TGGCCA	1 cut(s)	1157
Mph1103I	ATGCAT	2 cut(s)	1434, 2179
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	595
MscI	TGGCCA	1 cut(s)	1157
MslI	CAYNNNNRTG	3 cut(s)	1151, 2521, 2583
Msp20I	TGGCCA	1 cut(s)	1157
MspCI	CTTAAG	1 cut(s)	1700
MspI	CCGG	4 cut(s)	185, 347, 464, 611
MspR9I	CCNGG	8 cut(s)	348, 465, 914, 1296, 1575, 1788, 2134, 3056
Mva1269I	GAATGC	2 cut(s)	908, 1906
MvaI	CCWGG	6 cut(s)	914, 1296, 1575, 1788, 2134, 3056
MvnI	CGCG	3 cut(s)	79, 200, 1621
NarI	GGCGCC	1 cut(s)	2778
NciI	CCSGG	2 cut(s)	348, 465
NcoI	CCATGG	1 cut(s)	2110
NdeI	CATATG	2 cut(s)	2791, 2981
NdeII	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
NlaIV	GGNNCC	5 cut(s)	700, 1521, 2736, 2779, 2905
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	6 cut(s)	163, 737, 970, 1453, 1963, 2646
NsiI	ATGCAT	2 cut(s)	1434, 2179
NspI	RCATGY	4 cut(s)	154, 993, 1027, 3024
NspV	TTCGAA	1 cut(s)	1262
PaeI	GCATGC	1 cut(s)	3024
PciI	ACATGT	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	2575
PcsI	WCGNNNNNNNCGW	4 cut(s)	83, 99, 2059, 2579
PctI	GAATGC	2 cut(s)	908, 1906
PdmI	GAANNNNTTC	1 cut(s)	595
PflFI	GACNNNGTC	1 cut(s)	1925
PfoI	TCCNGGA	2 cut(s)	912, 1573
PkrI	GCNGC	2 cut(s)	122, 2919
Ple19I	CGATCG	1 cut(s)	37
PleI	GAGTC	5 cut(s)	106, 736, 1766, 1789, 2265
PluTI	GGCGCC	1 cut(s)	2781
PpsI	GAGTC	5 cut(s)	106, 736, 1766, 1789, 2265
Ppu21I	YACGTR	1 cut(s)	1437
PpuMI	RGGWCCY	2 cut(s)	1298, 2734
PscI	ACATGT	1 cut(s)	989
PshAI	GACNNNNGTC	1 cut(s)	2594
PshBI	ATTAAT	1 cut(s)	2340
PsiI	TTATAA	1 cut(s)	2010
Psp1406I	AACGTT	1 cut(s)	1081
Psp5II	RGGWCCY	2 cut(s)	1298, 2734
Psp6I	CCWGG	6 cut(s)	912, 1294, 1573, 1786, 2132, 3054
PspFI	CCCAGC	1 cut(s)	2737
PspGI	CCWGG	6 cut(s)	912, 1294, 1573, 1786, 2132, 3054
PspN4I	GGNNCC	5 cut(s)	700, 1521, 2736, 2779, 2905
PspPI	GGNCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
PspPPI	RGGWCCY	2 cut(s)	1298, 2734
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	1 cut(s)	1291
PsyI	GACNNNGTC	1 cut(s)	1925
PvuI	CGATCG	1 cut(s)	37
RsaI	GTAC	8 cut(s)	83, 107, 352, 707, 718, 767, 988, 1879
RsaNI	GTAC	8 cut(s)	82, 106, 351, 706, 717, 766, 987, 1878
RseI	CAYNNNNRTG	3 cut(s)	1151, 2521, 2583
SapI	GCTCTTC	1 cut(s)	2575
SatI	GCNGC	2 cut(s)	121, 2918
Sau3AI	GATC	9 cut(s)	34, 292, 565, 1291, 1543, 1856, 2035, 2332, 2890
Sau96I	GGNCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	5 cut(s)	107, 737, 1766, 1790, 2266
ScrFI	CCNGG	8 cut(s)	348, 465, 914, 1296, 1575, 1788, 2134, 3056
SduI	GDGCHC	2 cut(s)	143, 3013
SfaNI	GCATC	6 cut(s)	43, 409, 1876, 2186, 2453, 2626
SfcI	CTRYAG	3 cut(s)	828, 2142, 2225
SfoI	GGCGCC	1 cut(s)	2779
SfuI	TTCGAA	1 cut(s)	1262
SinI	GGWCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
SmiMI	CAYNNNNRTG	3 cut(s)	1151, 2521, 2583
SmlI	CTYRAG	4 cut(s)	1323, 1607, 1700, 2292
SmoI	CTYRAG	4 cut(s)	1323, 1607, 1700, 2292
SphI	GCATGC	1 cut(s)	3024
SsiI	CCGC	6 cut(s)	79, 234, 461, 1778, 2594, 2809
SspDI	GGCGCC	1 cut(s)	2777
SspI	AATATT	2 cut(s)	1764, 2639
SspMI	CTAG	7 cut(s)	366, 672, 900, 1769, 2435, 2838, 3070
StyD4I	CCNGG	8 cut(s)	346, 463, 912, 1294, 1573, 1786, 2132, 3054
StyI	CCWWGG	1 cut(s)	2110
TaaI	ACNGT	8 cut(s)	163, 169, 716, 2005, 2084, 2229, 2652, 2938
TaiI	ACGT	4 cut(s)	1047, 1084, 1439, 2056
TaqII	GACCGA	2 cut(s)	121, 193
TatI	WGTACW	2 cut(s)	705, 765
TscAI	CASTG	8 cut(s)	1462, 2008, 2627, 2649, 2710, 2880, 2919, 2978
TseFI	GTSAC	6 cut(s)	163, 737, 970, 1453, 1963, 2646
TseI	GCWGC	2 cut(s)	120, 2917
Tsp45I	GTSAC	6 cut(s)	163, 737, 970, 1453, 1963, 2646
TspDTI	ATGAA	8 cut(s)	810, 813, 833, 1598, 1740, 2289, 2738, 3024
TspGWI	ACGGA	2 cut(s)	63, 892
TspRI	CASTG	8 cut(s)	1462, 2008, 2627, 2649, 2710, 2880, 2919, 2978
Tth111I	GACNNNGTC	1 cut(s)	1925
Vha464I	CTTAAG	1 cut(s)	1700
VneI	GTGCAC	1 cut(s)	3009
VpaK11BI	GGWCC	7 cut(s)	458, 608, 699, 1298, 1519, 1568, 2734
VspI	ATTAAT	1 cut(s)	2340
XapI	RAATTY	8 cut(s)	820, 958, 1108, 1193, 1492, 1592, 1727, 2949
XbaI	TCTAGA	3 cut(s)	671, 2434, 2837
XceI	RCATGY	4 cut(s)	154, 993, 1027, 3024
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	2224
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	7 cut(s)	366, 672, 900, 1769, 2435, 2838, 3070
ZrmI	AGTACT	1 cut(s)	767
Zsp2I	ATGCAT	2 cut(s)	1434, 2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.