Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010875

Physical Location & Seq

Genomic Coordinates Forward (+)

10834077 .. 10839885

Gene Structure 5809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGGAGAGAGCAGAGACTACGACTATCGAGTCCGATCCGTTCGATCGGAAATCGGACGGCGATGCGTCAACGGCGTCGCCTCCGTCGAGGTACTCGTCGTTCGGCGAGTCCGAGTACGAGCGCTATGGCAGCGCCAACTCGGTCATGGGCACGCCGAGCATGTGTAGCACAGTCACGGTTTTTAATGATTTTCCGGAGGCTGATTTCGCGTCGGTCAGGAGTTTAGGGTTTGGGGAGGAAGGCGGTGGTGTCGAGGGTTTCAGTTTGGGAGGGAGGATTGATAGGAATAGTAATCGAGAGGATCGGAGACTTTCGAGTAGTGGTAGGATTGAGGAAGATGGTATTAGAGGGCGTCCGGGTACTAAGTATGGGTCTAGTGGGTTGGAGTTGTATGGGAATGAGGATGATGATATTGGAGTTGGTGGTGATGCAAATGAGTTGATGTCTTGGAAGCTTGACAAGAGTGGACCGCCGGGTTTAATGGAGGGTTCGGAGTTGAAGTGTGGTTCAGATGATAGTGGTGAGGAGAATGAGGAAGGCAGGGGAGTGGAGAGAGGGAAAGATTGTGTGTTGGATCGAGACGATTCAAAAGAGGTTGGAACTGGTTCTCAGCTTGGACCGGAAGTTGAGCAGAGATGTTTTGATGGAGGAGAGATGGAGAGGGAAGAAGGAGCGTCGTCTAGAAATGAGTATTCCGAGGATGAGGGGTCCATGTACAACTACGGTACACATGATGAGCCTAATAGTGACTTTAATCATCAGAGGAGTGTAGAGTACTACTATGAGCAATCAAAACCAAAGAATGAAAATGAGAATCCATTTCTTATGAATTCATCTGTAGCCTTTGGTTCTGATGATTGGGATGATTTTGTGCAAGAGAGTGAACGGAGTAATATAGCTTCTTTCACTAGGAGTGCATTCCAGGAGCAGATAGAACTGAATGTGGAAACTGAAAAGAAAGTTTTGAATTCTGGTTCTGTCACTTCACATCAGGGTACATGTCAAACTGAGCAAGGGAAGGATGTGACTGACATGCCCAGAGGTAGCAAACACGTTGAAGCTGATAACAATCTGGCAGAAAGTGTTAAACGTTCCAGAGAACCAGCTAAGTCTCCAAATTTTGTTGAACCAGAGGGAGTAGAAGATGTGAAGGACATTCCTGTGGCCAATTATCAGGTGCAAGCTATTGAGGACTTGACTGAATTTACCAAAAGTTCTTTTACCACCCCAACTGGTTTTCAAAATGTTCAAGAACCAGAGCAGGAAGATTCGAAAGACATTGTATTGACCAAGAATAAAGATCCAGGCCCTGACAAATCAGCAAATTATCCTCAAGCTTCGTTGTCTGGCAATTTCTCCAAAATACAGCTCGATTCAGAAGCCAAAAAAGCTCCCGAGGAAAAGGGTTTCAACATTGTGGTTGACGACATATCTGATATGCATACGTGTAATAATACTGAGGTCACTGAGATTGATGATGGTCAAGATTTAGGAAATAAAAATTTGGGGAAGATAAAAGTTAAACTGGACCCCCTTTCTGAGATATCAACCGATCAACTGAGTATCCATTCAACTGGACCTCCTGGAAGTATGAAGGCAGAATTCTTTGAAGACCTTGAGCCAAATACGCGTACCTTAACTTTTGAAAATAATATGACGAAAAATGCTCCTGTTTCAGAAGATATTTTTGAAGAATATCCTATGCCACTTAAGACAGATAATTTTGAGCTAAATGAATTCTATGATGAGTTTGTTAATGACATGGAAGAAATATTGCTAGACTCTGCGGAGTCCCCCGGAGCAAGGTTCAGTCATGGTAACAGGAACTTACAATCACAACTATCTTTACCATTAAGAGATGGTGGATCGACTGCTTCTACTTCTGGTACAGATGATGCTTACCTGTTTAATCAGCATTCCCTCAGAATTGATGGGGTCGAAGTGGTGGGTGCAAAGCAGAAGAAGGGAGATGTCACCTTTAGTGAAAGACTGGTAGGAGTGAAGGAATACACTGTTTATAGAATGAGAGTGTGGAGTGGCAAGGATCAATGGGAGGTTGAACGTCGGTATCGTGATTTCTTTACACTCTACCGTCGGTTGAAAACATTGTTTGCTGACCATGGATGGAATCTACCTTCTCCCTGGTCTGCTGTAGAAAAGGAATCCAGAAAGATTTTTGGAAATGCATCTCCTGATGTTATTGCACAGAGAAGCGTTCTCATTCAAGAGTGTCTACAGTCCATTCTCCATTATAGATTCTTTTCGAGTCCTCCAAGTGCATTGATTTGGTTTCTGTCTCCTCAAGATTCATTTCCTACCTCCATGTCCTCAAATACACCTGATCCTATTAATAGAAGGGCAGACACAGAAAATGTGTCCACTTTAGGAAAGACGATATCACTTATTGTTGAAGTTCGACCATACAAATCTTTGAAGCAGATTCTAGAAGCACAACATTATATGTGTGCTGGATGCCACAAACATTTTGACGATGGAAAGACCCTGATACTGGATTTTGCACAGACATTTGGATGGGGCAAGCCTCGATTGTGTGAATATACAGGTCAATTATTTTGCTCTTCGTGCCATACGAATGAGACTGCGGTCATACCAGCAAGAGTATTGCATCACTGGGATTTTACTCAATATTCAGTGTCACAGTTAGCTAAATCTTATCTCGATTCTATACATGACCAGGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009987 GO:0012505 GO:0030154 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045445 GO:0048856 GO:0048869 GO:0061061

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

PX zf-RING_9

Protein Analysis

901

Amino Acids

100.55

Weight (kDa)

4.63

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	678 - 766	1.3e-06	PX domain
RH_dom	PF13901	849 - 899	2.3e-17	Rubicon Homology Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48195
fragaria_vesca	FvH4_5g05470 FvH4_5g05470 FvH4_5g05470
malus_domestica	MD06G1172500.v1.1 MD14G1178400.v1.1
prunus_persica	Prupe.5G171800_v2.0.a1 Prupe.5G171800_v2.0.a1
pyrus_communis	pycom06g15360 pycom14g14870
rosa_chinensis	RchiOBHm_Chr7g0193371
rosa_laevigata	RLG00000004275
rosa_multiflora	Rmu_co8475531.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262170
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135500 Rh7BG135800 Rh7CG139200 Rh7DG137200
rosa_wichuraiana	Rw7G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	2233
AccII	CGCG	2 cut(s)	209, 1630
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	243, 470, 1787, 2603
AclI	AACGTT	1 cut(s)	1090
AclWI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	7 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736
AcyI	GRCGYC	2 cut(s)	74, 352
AfaI	GTAC	9 cut(s)	92, 116, 361, 716, 727, 776, 997, 1633, 1888
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	1803, 2509
AflII	CTTAAG	1 cut(s)	1709
AflIII	ACRYGT	4 cut(s)	998, 1051, 1445, 1628
AjnI	CCWGG	5 cut(s)	921, 1303, 1582, 2141, 2694
Alw26I	GTCTC	6 cut(s)	8, 301, 573, 1116, 2301, 2591
AlwI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
AlwNI	CAGNNNCTG	1 cut(s)	1310
Ama87I	CYCGRG	1 cut(s)	1394
Aor13HI	TCCGGA	1 cut(s)	193
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	1164, 1306
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	7 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736
AseI	ATTAAT	1 cut(s)	2349
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	123, 134
AspS9I	GGNCC	6 cut(s)	467, 617, 708, 1307, 1528, 1577
AsuC2I	CCSGG	3 cut(s)	357, 474, 1797
AsuHPI	GGTGA	3 cut(s)	437, 533, 1966
AsuII	TTCGAA	1 cut(s)	1271
AvaI	CYCGRG	1 cut(s)	1394
AvaII	GGWCC	5 cut(s)	467, 617, 708, 1528, 1577
BaeGI	GKGCMC	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	2051, 2084
BalI	TGGCCA	1 cut(s)	1166
BarI	GAAGNNNNNNTAC	2 cut(s)	883, 915
BbsI	GAAGAC	1 cut(s)	1617
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	9 cut(s)	332, 638, 649, 1472, 1853, 1925, 2118, 2486, 2526
BceAI	ACGGC	2 cut(s)	73, 87
BciT130I	CCWGG	5 cut(s)	923, 1305, 1584, 2143, 2696
BciVI	GTATCC	1 cut(s)	1574
BcnI	CCSGG	3 cut(s)	357, 474, 1797
BcoDI	GTCTC	6 cut(s)	8, 301, 573, 1116, 2301, 2591
BfaI	CTAG	5 cut(s)	375, 681, 909, 1778, 2444
BfmI	CTRYAG	3 cut(s)	837, 2151, 2234
BfoI	RGCGCY	2 cut(s)	124, 135
BfrI	CTTAAG	1 cut(s)	1709
BfuI	GTATCC	1 cut(s)	1574
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	8 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143, 2696
Bme18I	GGWCC	5 cut(s)	467, 617, 708, 1528, 1577
BmeT110I	CYCGRG	1 cut(s)	1394
BmgT120I	GGNCC	6 cut(s)	467, 617, 708, 1307, 1528, 1577
BmiI	GGNNCC	2 cut(s)	709, 1530
BmrFI	CCNGG	8 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143, 2696
BmrI	ACTGGG	1 cut(s)	2641
BmsI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
BmuI	ACTGGG	1 cut(s)	2641
BoxI	GACNNNNGTC	1 cut(s)	2603
BpiI	GAAGAC	1 cut(s)	1617
Bpu14I	TTCGAA	1 cut(s)	1271
BpuEI	CTTGAG	3 cut(s)	1317, 1637, 2286
BpuMI	CCSGG	3 cut(s)	357, 474, 1797
BsaAI	YACGTR	1 cut(s)	1446
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaHI	GRCGYC	2 cut(s)	74, 352
BsaJI	CCNNGG	5 cut(s)	696, 1395, 1795, 2119, 2141
BsaWI	WCCGGW	2 cut(s)	193, 619
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 1564, 1594
Bsc4I	CCNNNNNNNGG	2 cut(s)	1803, 2509
Bse1I	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
Bse8I	GATNNNNATC	1 cut(s)	1068
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	5 cut(s)	923, 1305, 1584, 2143, 2696
BseDI	CCNNGG	5 cut(s)	696, 1395, 1795, 2119, 2141
BseGI	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	2 cut(s)	1803, 2509
BseMII	CTCAG	7 cut(s)	623, 999, 1449, 1458, 1530, 1550, 1936
BseNI	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
BseRI	GAGGAG	4 cut(s)	539, 663, 778, 2289
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	209, 1630
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	1166, 1308
BsiEI	CGRYCG	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	1394
BsiSI	CCGG	5 cut(s)	194, 356, 473, 620, 1797
BslFI	GGGAC	1 cut(s)	1777
BslI	CCNNNNNNNGG	2 cut(s)	1803, 2509
BsmAI	GTCTC	6 cut(s)	8, 301, 573, 1116, 2301, 2591
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	1777
BsmI	GAATGC	2 cut(s)	917, 1915
BsnI	GGCC	2 cut(s)	1166, 1308
BsoBI	CYCGRG	1 cut(s)	1394
Bsp119I	TTCGAA	1 cut(s)	1271
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
Bsp19I	CCATGG	1 cut(s)	2119
BspACI	CCGC	4 cut(s)	243, 470, 1787, 2603
BspANI	GGCC	2 cut(s)	1166, 1308
BspCNI	CTCAG	7 cut(s)	622, 1000, 1450, 1459, 1531, 1551, 1935
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	209, 1630
BspLI	GGNNCC	2 cut(s)	709, 1530
BspPI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
BspQI	GCTCTTC	1 cut(s)	2584
BspT104I	TTCGAA	1 cut(s)	1271
BspTI	CTTAAG	1 cut(s)	1709
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
BssECI	CCNNGG	5 cut(s)	696, 1395, 1795, 2119, 2141
BssMI	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
BssNI	GRCGYC	2 cut(s)	74, 352
BssT1I	CCWWGG	1 cut(s)	2119
Bst2UI	CCWGG	5 cut(s)	923, 1305, 1584, 2143, 2696
Bst4CI	ACNGT	7 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661
Bst6I	CTCTTC	1 cut(s)	2584
BstACI	GRCGYC	2 cut(s)	74, 352
BstAFI	CTTAAG	1 cut(s)	1709
BstAUI	TGTACA	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	1446
BstBI	TTCGAA	1 cut(s)	1271
BstC8I	GCNNGC	3 cut(s)	152, 1182, 2540
BstDEI	CTNAG	9 cut(s)	363, 609, 1008, 1107, 1458, 1467, 1539, 1559, 1922
BstDSI	CCRYGG	1 cut(s)	2119
BstF5I	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BstFNI	CGCG	2 cut(s)	209, 1630
BstH2I	RGCGCY	2 cut(s)	124, 135
BstHHI	GCGC	2 cut(s)	123, 134
BstKTI	GATC	9 cut(s)	37, 46, 304, 577, 1303, 1555, 1868, 2047, 2344
BstMAI	GTCTC	6 cut(s)	8, 301, 573, 1116, 2301, 2591
BstMBI	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 129, 156, 165, 206, 1388, 1627, 2583
BstNI	CCWGG	5 cut(s)	923, 1305, 1584, 2143, 2696
BstNSI	RCATGY	3 cut(s)	163, 1002, 1036
BstPAI	GACNNNNGTC	1 cut(s)	2603
BstSCI	CCNGG	8 cut(s)	355, 472, 921, 1303, 1582, 1795, 2141, 2694
BstSFI	CTRYAG	3 cut(s)	837, 2151, 2234
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	2 cut(s)	209, 1630
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	1617
BstX2I	RGATCY	1 cut(s)	1300
BstXI	CCANNNNNNTGG	1 cut(s)	1574
BstYI	RGATCY	1 cut(s)	1300
BsuI	GTATCC	1 cut(s)	1574
BsuRI	GGCC	2 cut(s)	1166, 1308
BtgI	CCRYGG	1 cut(s)	2119
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BtsIMutI	CAGTG	4 cut(s)	1464, 2010, 2629, 2658
Cac8I	GCNNGC	3 cut(s)	152, 1182, 2540
CaiI	CAGNNNCTG	1 cut(s)	1310
CfoI	GCGC	2 cut(s)	123, 134
Cfr13I	GGNCC	6 cut(s)	467, 617, 708, 1307, 1528, 1577
CseI	GACGC	5 cut(s)	54, 63, 198, 341, 663
CsiI	ACCWGGT	1 cut(s)	2694
Csp6I	GTAC	9 cut(s)	91, 115, 360, 715, 726, 775, 996, 1632, 1887
CviQI	GTAC	9 cut(s)	91, 115, 360, 715, 726, 775, 996, 1632, 1887
DdeI	CTNAG	9 cut(s)	363, 609, 1008, 1107, 1458, 1467, 1539, 1559, 1922
DpnI	GATC	9 cut(s)	36, 45, 303, 576, 1302, 1554, 1867, 2046, 2343
DpnII	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	1 cut(s)	2584
EarI	CTCTTC	1 cut(s)	2584
Eco130I	CCWWGG	1 cut(s)	2119
Eco32I	GATATC	2 cut(s)	1545, 2397
Eco47I	GGWCC	5 cut(s)	467, 617, 708, 1528, 1577
Eco47III	AGCGCT	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	1394
EcoO109I	RGGNCCY	1 cut(s)	1307
EcoRI	GAATTC	4 cut(s)	829, 967, 1601, 1736
EcoRII	CCWGG	5 cut(s)	921, 1303, 1582, 2141, 2694
EcoRV	GATATC	2 cut(s)	1545, 2397
EcoT14I	CCWWGG	1 cut(s)	2119
EcoT22I	ATGCAT	2 cut(s)	1443, 2188
ErhI	CCWWGG	1 cut(s)	2119
Esp3I	CGTCTC	1 cut(s)	573
FaqI	GGGAC	1 cut(s)	1777
FblI	GTMKAC	1 cut(s)	2233
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	7 cut(s)	416, 713, 875, 1034, 2136, 2484, 2544
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	5 cut(s)	375, 681, 909, 1778, 2444
GlaI	GCGC	2 cut(s)	122, 133
GluI	GCNGC	1 cut(s)	130
HaeII	RGCGCY	2 cut(s)	124, 135
HaeIII	GGCC	2 cut(s)	1166, 1308
HapII	CCGG	5 cut(s)	194, 356, 473, 620, 1797
HgaI	GACGC	5 cut(s)	54, 63, 198, 341, 663
HhaI	GCGC	2 cut(s)	123, 134
Hin1I	GRCGYC	2 cut(s)	74, 352
Hin6I	GCGC	2 cut(s)	121, 132
HinP1I	GCGC	2 cut(s)	121, 132
HincII	GTYRAC	2 cut(s)	69, 1423
HindII	GTYRAC	2 cut(s)	69, 1423
HindIII	AAGCTT	2 cut(s)	452, 1335
HpaII	CCGG	5 cut(s)	194, 356, 473, 620, 1797
HphI	GGTGA	3 cut(s)	437, 533, 1966
Hpy166II	GTNNAC	7 cut(s)	69, 467, 728, 884, 1423, 2234, 2379
Hpy8I	GTNNAC	7 cut(s)	69, 467, 728, 884, 1423, 2234, 2379
Hpy99I	CGWCG	7 cut(s)	79, 88, 100, 214, 679, 2067, 2097
HpyCH4III	ACNGT	7 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661
HpyCH4IV	ACGT	4 cut(s)	1053, 1090, 1445, 2062
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 129, 156, 165, 206, 1388, 1627, 2583
HpyF3I	CTNAG	9 cut(s)	363, 609, 1008, 1107, 1458, 1467, 1539, 1559, 1922
HpySE526I	ACGT	4 cut(s)	1053, 1090, 1445, 2062
Hsp92I	GRCGYC	2 cut(s)	74, 352
HspAI	GCGC	2 cut(s)	121, 132
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
LguI	GCTCTTC	1 cut(s)	2584
LmnI	GCTCC	5 cut(s)	671, 925, 1396, 1672, 1799
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
MabI	ACCWGGT	1 cut(s)	2694
MaeI	CTAG	5 cut(s)	375, 681, 909, 1778, 2444
MaeII	ACGT	4 cut(s)	1053, 1090, 1445, 2062
MaeIII	GTNAC	8 cut(s)	172, 746, 979, 1024, 1462, 1817, 1972, 2655
MalI	GATC	9 cut(s)	36, 45, 303, 576, 1302, 1554, 1867, 2046, 2343
MboI	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
MflI	RGATCY	1 cut(s)	1300
MhlI	GDGCHC	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	1166
MluI	ACGCGT	1 cut(s)	1628
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	5 cut(s)	38, 116, 1775, 1799, 2275
MmeI	TCCRAC	3 cut(s)	363, 552, 577
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	2 cut(s)	1443, 2188
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	1166
MslI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
Msp20I	TGGCCA	1 cut(s)	1166
MspCI	CTTAAG	1 cut(s)	1709
MspI	CCGG	5 cut(s)	194, 356, 473, 620, 1797
MspR9I	CCNGG	8 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143, 2696
Mva1269I	GAATGC	2 cut(s)	917, 1915
MvaI	CCWGG	5 cut(s)	923, 1305, 1584, 2143, 2696
MvnI	CGCG	2 cut(s)	209, 1630
MwoI	GCNNNNNNNGC	8 cut(s)	71, 129, 156, 165, 206, 1388, 1627, 2583
NciI	CCSGG	3 cut(s)	357, 474, 1797
NcoI	CCATGG	1 cut(s)	2119
NdeII	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
NlaIV	GGNNCC	2 cut(s)	709, 1530
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
NsiI	ATGCAT	2 cut(s)	1443, 2188
NspI	RCATGY	3 cut(s)	163, 1002, 1036
NspV	TTCGAA	1 cut(s)	1271
PciI	ACATGT	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	2584
PcsI	WCGNNNNNNNCGW	5 cut(s)	83, 92, 108, 2068, 2588
PctI	GAATGC	2 cut(s)	917, 1915
PdmI	GAANNNNTTC	1 cut(s)	604
PfoI	TCCNGGA	2 cut(s)	921, 1582
PkrI	GCNGC	1 cut(s)	131
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	5 cut(s)	37, 115, 1775, 1798, 2274
PpsI	GAGTC	5 cut(s)	37, 115, 1775, 1798, 2274
Ppu21I	YACGTR	1 cut(s)	1446
PscI	ACATGT	1 cut(s)	998
PshAI	GACNNNNGTC	1 cut(s)	2603
PshBI	ATTAAT	1 cut(s)	2349
Psp1406I	AACGTT	1 cut(s)	1090
Psp6I	CCWGG	5 cut(s)	921, 1303, 1582, 2141, 2694
PspGI	CCWGG	5 cut(s)	921, 1303, 1582, 2141, 2694
PspN4I	GGNNCC	2 cut(s)	709, 1530
PspPI	GGNCC	6 cut(s)	467, 617, 708, 1307, 1528, 1577
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstNI	CAGNNNCTG	1 cut(s)	1310
PsuI	RGATCY	1 cut(s)	1300
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	9 cut(s)	92, 116, 361, 716, 727, 776, 997, 1633, 1888
RsaNI	GTAC	9 cut(s)	91, 115, 360, 715, 726, 775, 996, 1632, 1887
RseI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
SapI	GCTCTTC	1 cut(s)	2584
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	9 cut(s)	34, 43, 301, 574, 1300, 1552, 1865, 2044, 2341
Sau96I	GGNCC	6 cut(s)	467, 617, 708, 1307, 1528, 1577
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	5 cut(s)	38, 116, 1775, 1799, 2275
ScrFI	CCNGG	8 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143, 2696
SduI	GDGCHC	1 cut(s)	152
SexAI	ACCWGGT	1 cut(s)	2694
SfaNI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
SfcI	CTRYAG	3 cut(s)	837, 2151, 2234
SfuI	TTCGAA	1 cut(s)	1271
SinI	GGWCC	5 cut(s)	467, 617, 708, 1528, 1577
SmiMI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
SmlI	CTYRAG	4 cut(s)	1332, 1616, 1709, 2301
SmoI	CTYRAG	4 cut(s)	1332, 1616, 1709, 2301
SsiI	CCGC	4 cut(s)	243, 470, 1787, 2603
SspI	AATATT	2 cut(s)	1773, 2648
SspMI	CTAG	5 cut(s)	375, 681, 909, 1778, 2444
StyD4I	CCNGG	8 cut(s)	355, 472, 921, 1303, 1582, 1795, 2141, 2694
StyI	CCWWGG	1 cut(s)	2119
TaaI	ACNGT	7 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661
TaiI	ACGT	4 cut(s)	1056, 1093, 1448, 2065
TaqII	GACCGA	2 cut(s)	130, 202
TatI	WGTACW	2 cut(s)	714, 774
TscAI	CASTG	4 cut(s)	1471, 2017, 2636, 2658
TseFI	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
TspDTI	ATGAA	6 cut(s)	819, 822, 842, 1607, 1749, 2298
TspGWI	ACGGA	3 cut(s)	27, 72, 901
TspRI	CASTG	4 cut(s)	1471, 2017, 2636, 2658
Vha464I	CTTAAG	1 cut(s)	1709
VpaK11BI	GGWCC	5 cut(s)	467, 617, 708, 1528, 1577
VspI	ATTAAT	1 cut(s)	2349
XapI	RAATTY	7 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736
XbaI	TCTAGA	2 cut(s)	680, 2443
XceI	RCATGY	3 cut(s)	163, 1002, 1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	2233
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	5 cut(s)	375, 681, 909, 1778, 2444
ZrmI	AGTACT	1 cut(s)	776
Zsp2I	ATGCAT	2 cut(s)	1443, 2188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.