Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8483439.1

Orthogroup ID

OG0013169

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2298

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8483439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 730 bp

ggagactgtggttgagtctggggttgttgatcttgaggacattgcaggtaaagcaccttcaagggggacggtgacggtggctaagactaagaccaatgggatagtgaatggtaaaagagatatggtcactccggtgattcgtgccagcttagagaagcaggggtacaaaattattggttcgcatagtggtgtcaaaatttgtagatggacaaagtcacagcttagaggccgaggtggttgctataaacactcgttttatggcatagaaagtcataggtgcatggaggcaacccctagtttggcatgtgccaataaatgtgttttctgttggagacatcatacaaaccctgttggaaagagttggcagtggaagatggacgatccattagagattgtgaaaactgccatagacctgcacagtaaaatgattaagcaaatgagaggagttcctggagttacattggagcgattaacagagggtctctctcccaggcattgtgccttgtcacttgttggtgaacctattatgtatccagagattaatacactagtagatgagctgcatcgtagacggatttctacttttctagtgacaaatgctcaatttcctgaaaaaattagaatgctgaaacctattacacagttatatgtaagtgtggatgctgcaactaaagagagtttgaaggcaattgacaggccactttttggagatttttgggagcgatttatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Flavodoxin_1 Radical_SAM Wyosine_form

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

9.41

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75200
fragaria_vesca	FvH4_2g39810 FvH4_2g39810
malus_domestica	MD08G1031900.v1.1 MD15G1027800.v1.1
prunus_persica	Prupe.1G379500_v2.0.a1 Prupe.1G379500_v2.0.a1
pyrus_communis	pycom08g02520 pycom15g02380
rosa_chinensis	RchiOBHm_Chr6g0301031
rosa_laevigata	RLG00000011283
rosa_multiflora	Rmu_co8483439.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167240
rosa_rugosa	Rorug06G0300100
rosa_samantha	Rh6AG414000 Rh6BG421000 Rh6CG428600 Rh6DG414000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 421
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccI	GTMKAC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	63, 299, 705
AgsI	TTSAA	2 cut(s)	61, 683
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	449, 489
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	148, 221, 560
AluI	AGCT	3 cut(s)	148, 221, 560
Alw26I	GTCTC	2 cut(s)	326, 486
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	2 cut(s)	227, 696
ApeKI	GCWGC	2 cut(s)	560, 663
ApoI	RAATTY	1 cut(s)	196
AseI	ATTAAT	1 cut(s)	541
AsuHPI	GGTGA	3 cut(s)	83, 146, 528
BarI	GAAGNNNNNNTAC	4 cut(s)	41, 73, 147, 179
BbvI	GCAGC	2 cut(s)	547, 650
BccI	CCATC	2 cut(s)	199, 368
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	2 cut(s)	451, 491
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	326, 486
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	295, 549, 588
BfuAI	ACCTGC	2 cut(s)	36, 421
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	2 cut(s)	561, 664
BlsI	GCNGC	2 cut(s)	562, 665
Bme1390I	CCNGG	2 cut(s)	451, 491
BmrFI	CCNGG	2 cut(s)	451, 491
BmsI	GCATC	2 cut(s)	572, 650
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	230, 489
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 299, 705
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	451, 491
BseDI	CCNNGG	2 cut(s)	230, 489
BseGI	GGATG	1 cut(s)	665
BseLI	CCNNNNNNNGG	3 cut(s)	63, 299, 705
BseMI	GCAATG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	547, 650
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	229, 698
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	63, 299, 705
BsmAI	GTCTC	2 cut(s)	326, 486
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	229, 698
Bso31I	GGTCTC	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	29, 380
BspANI	GGCC	2 cut(s)	229, 698
BspMI	ACCTGC	2 cut(s)	36, 421
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	230, 489
BssMI	GATC	2 cut(s)	29, 380
Bst2UI	CCWGG	2 cut(s)	451, 491
Bst4CI	ACNGT	5 cut(s)	8, 71, 77, 420, 643
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	4 cut(s)	82, 88, 149, 222
BstF5I	GGATG	1 cut(s)	665
BstKTI	GATC	2 cut(s)	32, 383
BstMAI	GTCTC	2 cut(s)	326, 486
BstMBI	GATC	2 cut(s)	29, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	451, 491
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	449, 489
BstV1I	GCAGC	2 cut(s)	547, 650
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	229, 698
BtsCI	GGATG	1 cut(s)	665
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	2 cut(s)	36, 421
Cac8I	GCNNGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	2 cut(s)	281, 304
CviJI	RGCY	6 cut(s)	81, 148, 221, 229, 560, 698
CviKI_1	RGCY	6 cut(s)	81, 148, 221, 229, 560, 698
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	4 cut(s)	82, 88, 149, 222
DpnI	GATC	2 cut(s)	31, 382
DpnII	GATC	2 cut(s)	29, 380
Eco31I	GGTCTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	449, 489
FaeI	CATG	2 cut(s)	284, 307
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	280, 303
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	2 cut(s)	561, 664
FokI	GGATG	1 cut(s)	672
Fsp4HI	GCNGC	2 cut(s)	561, 664
FspBI	CTAG	3 cut(s)	295, 549, 588
GluI	GCNGC	2 cut(s)	561, 664
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	2 cut(s)	229, 698
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	284, 307
HinfI	GANTC	2 cut(s)	15, 137
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	3 cut(s)	83, 146, 528
Hpy166II	GTNNAC	2 cut(s)	519, 570
Hpy188III	TCNNGA	3 cut(s)	33, 534, 609
Hpy8I	GTNNAC	2 cut(s)	519, 570
HpyAV	CCTTC	2 cut(s)	67, 677
HpyCH4III	ACNGT	5 cut(s)	8, 71, 77, 420, 643
HpyCH4V	TGCA	5 cut(s)	45, 280, 416, 563, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	82, 88, 149, 222
Hsp92II	CATG	2 cut(s)	284, 307
Kzo9I	GATC	2 cut(s)	29, 380
LmnI	GCTCC	2 cut(s)	464, 719
Lsp1109I	GCAGC	2 cut(s)	547, 650
LweI	GCATC	2 cut(s)	572, 650
MaeI	CTAG	3 cut(s)	295, 549, 588
MaeIII	GTNAC	6 cut(s)	71, 125, 214, 455, 505, 590
MalI	GATC	2 cut(s)	31, 382
MboI	GATC	2 cut(s)	29, 380
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	688
MluCI	AATT	5 cut(s)	169, 196, 603, 616, 688
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	309, 332
MnlI	CCTC	6 cut(s)	29, 219, 225, 278, 435, 470
MseI	TTAA	3 cut(s)	430, 471, 541
MslI	CAYNNNNRTG	2 cut(s)	132, 187
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	451, 491
MunI	CAATTG	1 cut(s)	688
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	451, 491
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	29, 380
NlaIII	CATG	2 cut(s)	284, 307
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	5 cut(s)	71, 125, 214, 505, 590
NspI	RCATGY	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	705
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	562, 665
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	449, 489
PspGI	CCWGG	2 cut(s)	449, 489
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	132, 187
SaqAI	TTAA	3 cut(s)	430, 471, 541
SatI	GCNGC	2 cut(s)	561, 664
Sau3AI	GATC	2 cut(s)	29, 380
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	451, 491
SfaNI	GCATC	2 cut(s)	572, 650
SmiMI	CAYNNNNRTG	2 cut(s)	132, 187
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	5 cut(s)	169, 196, 603, 616, 688
SspMI	CTAG	3 cut(s)	295, 549, 588
StyD4I	CCNGG	2 cut(s)	449, 489
TaaI	ACNGT	5 cut(s)	8, 71, 77, 420, 643
TasI	AATT	5 cut(s)	169, 196, 603, 616, 688
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	430, 471, 541
Tru9I	TTAA	3 cut(s)	430, 471, 541
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	5 cut(s)	71, 125, 214, 505, 590
TseI	GCWGC	2 cut(s)	560, 663
Tsp45I	GTSAC	5 cut(s)	71, 125, 214, 505, 590
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	372
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	705
VspI	ATTAAT	1 cut(s)	541
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	3 cut(s)	295, 549, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.