Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501061.1

Orthogroup ID

OG0007946

Physical Location & Seq

Genomic Coordinates Reverse (-)

40 .. 2534

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgggaccttcaaaacacgatcggagtatcatcagtggacagacgtccacgcgccaccagcgtctcaacgacgctcttaacctcggcaccagagtgtgtggcggtgataaggcaaggagatggcagtgtatggatattgcgatacagaggcatgtggtccattctattgctgcgtttcttgattctgtttctggggataagctgcaccatccacttttgaaggcttccgctgccgatatcattgcagcattagtctggatacttcagtctaacaagggatccatgttgagcactgcagcaaatgtgacagtaaaattagtcagccttttacccaaatcaatactgcagctggatgctttagatcttattaatcctttgtcatctttgttatctgcccatcaaacagaagtttctatatcatgtgctgcagcattgagtcttatccttacaaatctcagtatgaagaatgcaaaagaagtttgggacatccttgagaaaacagaaagtgtatctcaacttatcagtaacttacggtccttttcagaatgtatgatgccatttgaacattttcaacagatggctttacttttgagtacaatactatggtggtggcctccatctaggttttctgtttggagtgatgccaaactgatggaagatttaaatgatatgcttataaagcgagatgcttatcacaaagttgttgttttgaaattgtattctgccgtagctttatgtggtaatggggccaagaaagtattagaaggtggagaggcacttctggaacagatggtgcaatgcatggacagctcatatccttattccgctagaattgaagcattcaggctagcacagtgtttagcgataaatgaacaaaaatgcttgcaaatgatgagtttatcttgccaacctattattaaagccataatttctggaatgtgtgactggagctcacattctagaaaggtcaccaatgaccaattgtctttgctagtggaggcatgtcgcttggctctgatcactcgttgggcagggaagcatcacatttacttctggaagcaagggattgataaaatccttctcgatcttctccttgaaaattttcacaaccaatcatatgaagattccttgtcattggaagagcagatagttattgctaaggagggtctcaatgctaattatttactttttttgaggacttatgtctgggatattcttggatggcttgcaatacattgtggggaggatttcaaacctgaaactgagttccactttgacatccttattgcatgtgcatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

433

Amino Acids

48.7

Weight (kDa)

6.43

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04390
fragaria_vesca	FvH4_3g15860
malus_domestica	MD05G1219300.v1.1
prunus_persica	Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1
pyrus_communis	pycom05g20050 pycom05g20060
rosa_chinensis	RchiOBHm_Chr5g0026671
rosa_laevigata	RLG00000032945
rosa_multiflora	Rmu_co8501061.1_g000001 Rmu_sc0004490.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052790
rosa_rugosa	Rorug05G0094700 Rorug05G0094700
rosa_samantha	Rh5AG188300 Rh5BG184600 Rh5CG204500 Rh5DG186900
rosa_wichuraiana	Rw5G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	102, 228, 825
AclWI	GGATC	2 cut(s)	273, 286
AcsI	RAATTY	1 cut(s)	1099
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	595
AgsI	TTSAA	8 cut(s)	12, 220, 563, 572, 712, 836, 1097, 1252
AhdI	GACNNNNNGTC	1 cut(s)	982
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	202, 349, 731, 810, 951
AluI	AGCT	5 cut(s)	202, 349, 731, 810, 951
Alw21I	GWGCWC	2 cut(s)	293, 953
Alw26I	GTCTC	2 cut(s)	68, 1172
AlwI	GGATC	2 cut(s)	273, 286
AoxI	GGCC	2 cut(s)	611, 747
ApeKI	GCWGC	8 cut(s)	170, 202, 230, 245, 296, 346, 425, 428
ApoI	RAATTY	1 cut(s)	1099
AseI	ATTAAT	1 cut(s)	369
Asp700I	GAANNNNTTC	2 cut(s)	567, 1101
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	4 cut(s)	5, 157, 534, 747
AsuHPI	GGTGA	2 cut(s)	116, 961
AsuNHI	GCTAGC	1 cut(s)	847
AvaII	GGWCC	3 cut(s)	5, 157, 534
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BamHI	GGATCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	293, 953
BbvI	GCAGC	8 cut(s)	157, 189, 217, 257, 308, 358, 412, 440
BccI	CCATC	8 cut(s)	114, 216, 405, 571, 625, 646, 784, 1215
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	1017
BcoDI	GTCTC	2 cut(s)	68, 1172
BfaI	CTAG	5 cut(s)	621, 828, 848, 960, 992
BfmI	CTRYAG	3 cut(s)	294, 344, 426
BfuI	GTATCC	1 cut(s)	252
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	8 cut(s)	171, 203, 231, 246, 297, 347, 426, 429
BlsI	GCNGC	8 cut(s)	172, 204, 232, 247, 298, 348, 427, 430
Bme18I	GGWCC	3 cut(s)	5, 157, 534
BmeRI	GACNNNNNGTC	1 cut(s)	982
BmgT120I	GGNCC	4 cut(s)	5, 157, 534, 747
BmiI	GGNNCC	4 cut(s)	6, 88, 280, 748
BmsI	GCATC	5 cut(s)	343, 543, 631, 676, 1048
BmtI	GCTAGC	1 cut(s)	851
BoxI	GACNNNNGTC	2 cut(s)	43, 1202
BpmI	CTGGAG	1 cut(s)	967
Bpu10I	CCTNAGC	1 cut(s)	1158
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	1172
BsaJI	CCNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	950
Bse3DI	GCAATG	2 cut(s)	240, 803
Bse8I	GATNNNNATC	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	5 cut(s)	208, 358, 486, 1226, 1278
BseJI	GATNNNNATC	1 cut(s)	690
BseMI	GCAATG	2 cut(s)	240, 803
BseMII	CTCAG	2 cut(s)	469, 1254
BseNI	ACTGG	1 cut(s)	950
BseXI	GCAGC	8 cut(s)	157, 189, 217, 257, 308, 358, 412, 440
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	613, 749
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	293, 953
BslFI	GGGAC	2 cut(s)	18, 497
BsmAI	GTCTC	2 cut(s)	68, 1172
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	18, 497
BsmI	GAATGC	2 cut(s)	472, 839
BsnI	GGCC	2 cut(s)	613, 749
Bso31I	GGTCTC	1 cut(s)	1172
Bsp1286I	GDGCHC	2 cut(s)	293, 953
Bsp143I	GATC	5 cut(s)	19, 278, 361, 1017, 1084
BspACI	CCGC	3 cut(s)	102, 228, 825
BspANI	GGCC	2 cut(s)	613, 749
BspCNI	CTCAG	2 cut(s)	468, 1255
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	6, 88, 280, 748
BspMAI	CTGCAG	3 cut(s)	298, 348, 430
BspOI	GCTAGC	1 cut(s)	851
BspPI	GGATC	2 cut(s)	273, 286
BspQI	GCTCTTC	1 cut(s)	1134
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	1172
BsrDI	GCAATG	2 cut(s)	240, 803
BsrI	ACTGG	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	5 cut(s)	19, 278, 361, 1017, 1084
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	310, 534, 855
Bst6I	CTCTTC	1 cut(s)	1134
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	849, 884, 1227
BstDEI	CTNAG	3 cut(s)	455, 1158, 1263
BstEII	GGTNACC	1 cut(s)	967
BstF5I	GGATG	5 cut(s)	208, 358, 486, 1226, 1278
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	5 cut(s)	22, 281, 364, 1020, 1087
BstMAI	GTCTC	2 cut(s)	68, 1172
BstMBI	GATC	5 cut(s)	19, 278, 361, 1017, 1084
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 230, 679, 807
BstNSI	RCATGY	3 cut(s)	155, 1005, 1293
BstPAI	GACNNNNGTC	2 cut(s)	43, 1202
BstPI	GGTNACC	1 cut(s)	967
BstSFI	CTRYAG	3 cut(s)	294, 344, 426
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	8 cut(s)	157, 189, 217, 257, 308, 358, 412, 440
BstX2I	RGATCY	2 cut(s)	278, 361
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	278, 361
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	613, 749
BtsCI	GGATG	5 cut(s)	208, 358, 486, 1226, 1278
BtsI	GCAGTG	2 cut(s)	131, 291
BtsIMutI	CAGTG	4 cut(s)	40, 131, 291, 860
Cac8I	GCNNGC	3 cut(s)	849, 884, 1227
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	4 cut(s)	5, 157, 534, 747
CseI	GACGC	2 cut(s)	50, 80
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	7 cut(s)	152, 283, 420, 802, 1002, 1290, 1296
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	3 cut(s)	455, 1158, 1263
DpnI	GATC	5 cut(s)	21, 280, 363, 1019, 1086
DpnII	GATC	5 cut(s)	19, 278, 361, 1017, 1084
DraI	TTTAAA	1 cut(s)	663
DriI	GACNNNNNGTC	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	1134
Eam1105I	GACNNNNNGTC	1 cut(s)	982
EarI	CTCTTC	1 cut(s)	1134
Ecl136II	GAGCTC	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	1172
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	3 cut(s)	5, 157, 534
Eco53kI	GAGCTC	1 cut(s)	951
Eco57I	CTGAAG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	967
EcoICRI	GAGCTC	1 cut(s)	951
EcoO109I	RGGNCCY	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	967
EcoRV	GATATC	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	803
EcoT38I	GRGCYC	1 cut(s)	953
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	7 cut(s)	155, 286, 423, 805, 1005, 1293, 1299
FaqI	GGGAC	2 cut(s)	18, 497
FatI	CATG	7 cut(s)	151, 282, 419, 801, 1001, 1289, 1295
FauNDI	CATATG	1 cut(s)	1117
FbaI	TGATCA	1 cut(s)	1017
Fnu4HI	GCNGC	8 cut(s)	171, 203, 231, 246, 297, 347, 426, 429
FokI	GGATG	5 cut(s)	195, 365, 473, 1233, 1265
FriOI	GRGCYC	1 cut(s)	953
Fsp4HI	GCNGC	8 cut(s)	171, 203, 231, 246, 297, 347, 426, 429
FspBI	CTAG	5 cut(s)	621, 828, 848, 960, 992
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	8 cut(s)	171, 203, 231, 246, 297, 347, 426, 429
GsuI	CTGGAG	1 cut(s)	967
HaeIII	GGCC	2 cut(s)	613, 749
HgaI	GACGC	2 cut(s)	50, 80
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	7 cut(s)	155, 286, 423, 805, 1005, 1293, 1299
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	3 cut(s)	182, 436, 1124
HphI	GGTGA	2 cut(s)	116, 961
Hpy166II	GTNNAC	2 cut(s)	38, 48
Hpy188I	TCNGA	3 cut(s)	24, 544, 1017
Hpy188III	TCNNGA	7 cut(s)	179, 256, 782, 933, 960, 1054, 1082
Hpy8I	GTNNAC	2 cut(s)	38, 48
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	18, 214, 758, 1088
HpyCH4III	ACNGT	3 cut(s)	310, 534, 855
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 230, 679, 807
HpyF3I	CTNAG	3 cut(s)	455, 1158, 1263
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	7 cut(s)	155, 286, 423, 805, 1005, 1293, 1299
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	1017
Kzo9I	GATC	5 cut(s)	19, 278, 361, 1017, 1084
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	1 cut(s)	948
Lsp1109I	GCAGC	8 cut(s)	157, 189, 217, 257, 308, 358, 412, 440
LweI	GCATC	5 cut(s)	343, 543, 631, 676, 1048
MaeI	CTAG	5 cut(s)	621, 828, 848, 960, 992
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	4 cut(s)	304, 524, 941, 967
MalI	GATC	5 cut(s)	21, 280, 363, 1019, 1086
MboI	GATC	5 cut(s)	19, 278, 361, 1017, 1084
MboII	GAAGA	5 cut(s)	475, 668, 1079, 1133, 1151
MfeI	CAATTG	1 cut(s)	980
MflI	RGATCY	2 cut(s)	278, 361
MhlI	GDGCHC	2 cut(s)	293, 953
MluCI	AATT	7 cut(s)	314, 713, 831, 927, 980, 1099, 1177
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	92, 141, 624, 766, 991, 1156, 1188, 1237
Mph1103I	ATGCAT	1 cut(s)	803
MroXI	GAANNNNTTC	2 cut(s)	567, 1101
MseI	TTAA	4 cut(s)	78, 369, 662, 918
MslI	CAYNNNNRTG	2 cut(s)	92, 1294
MspA1I	CMGCKG	2 cut(s)	230, 349
MunI	CAATTG	1 cut(s)	980
Mva1269I	GAATGC	2 cut(s)	472, 839
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	58, 230, 679, 807
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	5 cut(s)	19, 278, 361, 1017, 1084
NheI	GCTAGC	1 cut(s)	847
NlaIII	CATG	7 cut(s)	155, 286, 423, 805, 1005, 1293, 1299
NlaIV	GGNNCC	4 cut(s)	6, 88, 280, 748
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	304, 941, 967
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	3 cut(s)	155, 1005, 1293
OliI	CACNNNNGTG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	1134
PctI	GAATGC	2 cut(s)	472, 839
PdmI	GAANNNNTTC	2 cut(s)	567, 1101
PfeI	GAWTC	2 cut(s)	182, 1124
PkrI	GCNGC	8 cut(s)	172, 204, 232, 247, 298, 348, 427, 430
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	5
PshAI	GACNNNNGTC	2 cut(s)	43, 1202
PshBI	ATTAAT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	5
PspEI	GGTNACC	1 cut(s)	967
PspN4I	GGNNCC	4 cut(s)	6, 88, 280, 748
PspPI	GGNCC	4 cut(s)	5, 157, 534, 747
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	3 cut(s)	298, 348, 430
PsuI	RGATCY	2 cut(s)	278, 361
PvuI	CGATCG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	2 cut(s)	92, 1294
SacI	GAGCTC	1 cut(s)	953
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	4 cut(s)	78, 369, 662, 918
SatI	GCNGC	8 cut(s)	171, 203, 231, 246, 297, 347, 426, 429
Sau3AI	GATC	5 cut(s)	19, 278, 361, 1017, 1084
Sau96I	GGNCC	4 cut(s)	5, 157, 534, 747
SchI	GAGTC	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	293, 953
SfaNI	GCATC	5 cut(s)	343, 543, 631, 676, 1048
SfcI	CTRYAG	3 cut(s)	294, 344, 426
SinI	GGWCC	3 cut(s)	5, 157, 534
SmiI	ATTTAAAT	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	92, 1294
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	7 cut(s)	314, 713, 831, 927, 980, 1099, 1177
SsiI	CCGC	3 cut(s)	102, 228, 825
SspMI	CTAG	5 cut(s)	621, 828, 848, 960, 992
SstI	GAGCTC	1 cut(s)	953
SwaI	ATTTAAAT	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	310, 534, 855
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	1083
TasI	AATT	7 cut(s)	314, 713, 831, 927, 980, 1099, 1177
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	182, 1124
Tru1I	TTAA	4 cut(s)	78, 369, 662, 918
Tru9I	TTAA	4 cut(s)	78, 369, 662, 918
TscAI	CASTG	4 cut(s)	40, 131, 298, 860
TseFI	GTSAC	3 cut(s)	304, 941, 967
TseI	GCWGC	8 cut(s)	170, 202, 230, 245, 296, 346, 425, 428
Tsp45I	GTSAC	3 cut(s)	304, 941, 967
TspDTI	ATGAA	3 cut(s)	476, 885, 1134
TspRI	CASTG	4 cut(s)	40, 131, 298, 860
VpaK11BI	GGWCC	3 cut(s)	5, 157, 534
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	1 cut(s)	1099
XbaI	TCTAGA	1 cut(s)	959
XceI	RCATGY	3 cut(s)	155, 1005, 1293
XmnI	GAANNNNTTC	2 cut(s)	567, 1101
XspI	CTAG	5 cut(s)	621, 828, 848, 960, 992
ZraI	GACGTC	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.