Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004490.1

Orthogroup ID

OG0007946

Physical Location & Seq

Genomic Coordinates Reverse (-)

52982 .. 56340

Gene Structure 3359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004490.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

atgctacagttttcattcttatttccagctgttagttttctgatttttctttctttctccatatcctttgacagcttgacctttgttgaggcaattcagaaatggcataaaatatatgaaaacgacattgctcgtaccttcagaagtgaatcggcaacgagggcagttctgatgatgacttattctccctgcaaatacattgcatcaaaggccagattcatattgtctgaaacactgaagccaaaaggcctggagtatctgaatatcttactgcgttttcttaataatctgtcatctgggaatttcgcgataccagataaactccaaattatcatttatttaatgggatttatatgctattcaggtttggaagagtatcaagtctggattatcaaacaaaaaggggtaaaaacactattttctttcgtgaaatggtgcttaagtaatcatttccaagtagaaaggttgagctttgctccccatttgcataatacgtttcatgggaaaatttgttgttcaagttccagagaatgggaagggaaagacattcttttgttgtacagtttgttgggattggctgagttgataaagcattctggatgtgtaggagataacctagacagaattgccggtaagaatacattggctcatattgaagctgaactagttagtaaacttcaggacatctgtaacgacaattgtacccctggggtgcaatggtatgccgcatatgttcttagttattttgggttttatggttttccgagtaagctaatgaaaaggattggtaaagcaattaataataaggattctgctgatttgcaattcgttctcacaaatggagagtgtttcagtgttcatggggtggtgcttgcaatccaatgtccatcgctactgcctcctgaagggctgcttcctagtgaggtaacatccgatgattcttcagtgacaggctctatggaggtttctaaagagtttcagaaagacataagattatctgctcatgtcgatcaccaagcattggtgatgttgttggagtatatctacttgggatatgtacaagcagaagaagaacttgcaaaaaagttgaggactcttgccaaacgttgtaatttacagcctctgttacagatgctttgtagaaaacgtccaaagtggggcattgcttttcctagccctgatctcagtgcagctcttggtccatccggacatcgtttctcggatgtcatcttagaagcgaaagaaacaaagcttttgggctggacatgtggtgtttgctctttatcagtgcctcacatgcatgttcacaaggttgtattgtcagcaagttgtgattatctgagggccttgtttgagtcaggaatgcaggagagcaactcacaagccataaaggtctcaatcagttggaaagcaatggttaaactagtcaactacttctattctagtaacctgccaaagcctccttccggatgtatatggaataacatggacactgaagaaaagttagatgaggtacagtcatatgtagagcttttttggctctctgagttctggatcatggaagatgtccaggaagcatgctcggatgccatcatatcatgtcttggttctgcaagagagttggctattaaaatactacaaattgctgcaaatttatctctctggaacttggccgaggttgcagcgacttatatggcccctttatatcgccagttatgtgattctggtgaacttgaaacacttgatgaaatgctggctgatatggttcgggtagcgtctgttcgattctcccaacagggtggtgatcagtttcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

605

Amino Acids

68.19

Weight (kDa)

6.1

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04390
fragaria_vesca	FvH4_3g15860
malus_domestica	MD05G1219300.v1.1
prunus_persica	Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1
pyrus_communis	pycom05g20050 pycom05g20060
rosa_chinensis	RchiOBHm_Chr5g0026671
rosa_laevigata	RLG00000032945
rosa_multiflora	Rmu_co8501061.1_g000001 Rmu_sc0004490.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052790
rosa_rugosa	Rorug05G0094700 Rorug05G0094700
rosa_samantha	Rh5AG188300 Rh5BG184600 Rh5CG204500 Rh5DG186900
rosa_wichuraiana	Rw5G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1458
AccB7I	CCANNNNNTGG	2 cut(s)	531, 1021
AccII	CGCG	1 cut(s)	308
AccIII	TCCGGA	2 cut(s)	1205, 1466
AciI	CCGC	1 cut(s)	726
AclI	AACGTT	1 cut(s)	1105
AclWI	GGATC	1 cut(s)	1562
AcoI	YGGCCR	1 cut(s)	1671
AcsI	RAATTY	3 cut(s)	301, 507, 1651
AcuI	CTGAAG	6 cut(s)	124, 257, 662, 924, 927, 1515
AfaI	GTAC	5 cut(s)	136, 560, 703, 1059, 1515
AfiI	CCNNNNNNNGG	5 cut(s)	531, 905, 1021, 1157, 1466
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	1265
AgsI	TTSAA	3 cut(s)	519, 656, 1736
AhlI	ACTAGT	2 cut(s)	664, 1423
AjnI	CCWGG	3 cut(s)	249, 706, 1569
AjuI	GAANNNNNNNTTGG	2 cut(s)	1447, 1479
AluBI	AGCT	8 cut(s)	29, 75, 471, 659, 772, 1193, 1252, 1531
AluI	AGCT	8 cut(s)	29, 75, 471, 659, 772, 1193, 1252, 1531
Alw26I	GTCTC	1 cut(s)	1399
AlwI	GGATC	1 cut(s)	1562
AlwNI	CAGNNNCTG	1 cut(s)	1123
Aor13HI	TCCGGA	2 cut(s)	1205, 1466
AoxI	GGCC	5 cut(s)	210, 247, 1344, 1671, 1695
ApeKI	GCWGC	4 cut(s)	910, 1190, 1646, 1682
ApoI	RAATTY	3 cut(s)	301, 507, 1651
AseI	ATTAAT	1 cut(s)	798
AspS9I	GGNCC	3 cut(s)	1199, 1344, 1696
AsuHPI	GGTGA	4 cut(s)	1004, 1036, 1739, 1814
AvaII	GGWCC	1 cut(s)	1199
BaeI	ACNNNNGTAYC	2 cut(s)	685, 718
BbvI	GCAGC	4 cut(s)	897, 1202, 1633, 1694
BccI	CCATC	3 cut(s)	895, 1210, 1598
BciT130I	CCWGG	3 cut(s)	251, 708, 1571
BclI	TGATCA	1 cut(s)	1804
BcoDI	GTCTC	1 cut(s)	1399
BcuI	ACTAGT	2 cut(s)	664, 1423
BfaI	CTAG	6 cut(s)	617, 665, 918, 1173, 1424, 1443
BfmI	CTRYAG	1 cut(s)	5
BfrI	CTTAAG	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	1458
BisI	GCNGC	5 cut(s)	726, 911, 1191, 1647, 1683
BlsI	GCNGC	5 cut(s)	727, 912, 1192, 1648, 1684
Bme1390I	CCNGG	3 cut(s)	251, 708, 1571
Bme18I	GGWCC	1 cut(s)	1199
BmgT120I	GGNCC	3 cut(s)	1199, 1344, 1696
BmiI	GGNNCC	1 cut(s)	1698
BmrFI	CCNGG	3 cut(s)	251, 708, 1571
BmsI	GCATC	3 cut(s)	212, 1122, 1576
BplI	GAGNNNNNCTC	4 cut(s)	460, 492, 1361, 1393
BpmI	CTGGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	1399
BsaJI	CCNNGG	3 cut(s)	706, 707, 1674
BsaWI	WCCGGW	2 cut(s)	1205, 1466
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	5 cut(s)	531, 905, 1021, 1157, 1466
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	1711
Bse3DI	GCAATG	5 cut(s)	126, 198, 722, 1161, 1419
BseAI	TCCGGA	2 cut(s)	1205, 1466
BseBI	CCWGG	3 cut(s)	251, 708, 1571
BseDI	CCNNGG	3 cut(s)	706, 707, 1674
BseGI	GGATG	6 cut(s)	605, 929, 1202, 1228, 1475, 1591
BseLI	CCNNNNNNNGG	5 cut(s)	531, 905, 1021, 1157, 1466
BseMI	GCAATG	5 cut(s)	126, 198, 722, 1161, 1419
BseMII	CTCAG	4 cut(s)	570, 1198, 1331, 1536
BseNI	ACTGG	1 cut(s)	1711
BseXI	GCAGC	4 cut(s)	897, 1202, 1633, 1694
BsgI	GTGCAG	1 cut(s)	1209
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	5 cut(s)	212, 249, 1346, 1673, 1697
BsiSI	CCGG	3 cut(s)	630, 1206, 1467
BslI	CCNNNNNNNGG	5 cut(s)	531, 905, 1021, 1157, 1466
BsmAI	GTCTC	1 cut(s)	1399
BsmI	GAATGC	2 cut(s)	592, 1368
BsnI	GGCC	5 cut(s)	212, 249, 1346, 1673, 1697
Bso31I	GGTCTC	1 cut(s)	1399
Bsp13I	TCCGGA	2 cut(s)	1205, 1466
Bsp1407I	TGTACA	2 cut(s)	558, 1057
Bsp143I	GATC	4 cut(s)	1009, 1180, 1554, 1804
Bsp68I	TCGCGA	1 cut(s)	308
BspACI	CCGC	1 cut(s)	726
BspANI	GGCC	5 cut(s)	212, 249, 1346, 1673, 1697
BspCNI	CTCAG	4 cut(s)	571, 1197, 1332, 1537
BspEI	TCCGGA	2 cut(s)	1205, 1466
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	1698
BspMI	ACCTGC	1 cut(s)	1458
BspPI	GGATC	1 cut(s)	1562
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	1399
BsrDI	GCAATG	5 cut(s)	126, 198, 722, 1161, 1419
BsrFI	RCCGGY	1 cut(s)	629
BsrGI	TGTACA	2 cut(s)	558, 1057
BsrI	ACTGG	1 cut(s)	1711
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	706, 707, 1674
BssMI	GATC	4 cut(s)	1009, 1180, 1554, 1804
Bst2UI	CCWGG	3 cut(s)	251, 708, 1571
Bst4CI	ACNGT	3 cut(s)	9, 563, 1518
Bst6I	CTCTTC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	439
BstAUI	TGTACA	2 cut(s)	558, 1057
BstC8I	GCNNGC	3 cut(s)	873, 1579, 1755
BstDEI	CTNAG	6 cut(s)	579, 737, 1184, 1231, 1340, 1545
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	6 cut(s)	605, 929, 1202, 1228, 1475, 1591
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	4 cut(s)	1012, 1183, 1557, 1807
BstMAI	GTCTC	1 cut(s)	1399
BstMBI	GATC	4 cut(s)	1009, 1180, 1554, 1804
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 209, 1297, 1537, 1679
BstNI	CCWGG	3 cut(s)	251, 708, 1571
BstNSI	RCATGY	4 cut(s)	1269, 1300, 1304, 1581
BstSCI	CCNGG	3 cut(s)	249, 706, 1569
BstSFI	CTRYAG	1 cut(s)	5
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	4 cut(s)	897, 1202, 1633, 1694
BstXI	CCANNNNNNTGG	1 cut(s)	1799
BsuRI	GGCC	5 cut(s)	212, 249, 1346, 1673, 1697
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	6 cut(s)	605, 929, 1202, 1228, 1475, 1591
BtsIMutI	CAGTG	6 cut(s)	233, 859, 951, 1192, 1293, 1491
BtuMI	TCGCGA	1 cut(s)	308
BveI	ACCTGC	1 cut(s)	1458
Cac8I	GCNNGC	3 cut(s)	873, 1579, 1755
CaiI	CAGNNNCTG	1 cut(s)	1123
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	3 cut(s)	1199, 1344, 1696
CseI	GACGC	1 cut(s)	1764
Csp6I	GTAC	5 cut(s)	135, 559, 702, 1058, 1514
CviQI	GTAC	5 cut(s)	135, 559, 702, 1058, 1514
DdeI	CTNAG	6 cut(s)	579, 737, 1184, 1231, 1340, 1545
DpnI	GATC	4 cut(s)	1011, 1182, 1556, 1806
DpnII	GATC	4 cut(s)	1009, 1180, 1554, 1804
EaeI	YGGCCR	1 cut(s)	1671
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	1399
Eco47I	GGWCC	1 cut(s)	1199
Eco57I	CTGAAG	6 cut(s)	124, 257, 662, 924, 927, 1515
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	1344
EcoRII	CCWGG	3 cut(s)	249, 706, 1569
EcoT22I	ATGCAT	1 cut(s)	1302
FalI	AAGNNNNNCTT	6 cut(s)	534, 566, 897, 929, 1059, 1091
FauNDI	CATATG	2 cut(s)	730, 1522
FbaI	TGATCA	1 cut(s)	1804
Fnu4HI	GCNGC	5 cut(s)	726, 911, 1191, 1647, 1683
FokI	GGATG	6 cut(s)	612, 916, 1189, 1235, 1482, 1598
Fsp4HI	GCNGC	5 cut(s)	726, 911, 1191, 1647, 1683
FspBI	CTAG	6 cut(s)	617, 665, 918, 1173, 1424, 1443
GluI	GCNGC	5 cut(s)	726, 911, 1191, 1647, 1683
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	212, 249, 1346, 1673, 1697
HapII	CCGG	3 cut(s)	630, 1206, 1467
HgaI	GACGC	1 cut(s)	1764
HincII	GTYRAC	1 cut(s)	1429
HindII	GTYRAC	1 cut(s)	1429
HindIII	AAGCTT	1 cut(s)	1250
HinfI	GANTC	8 cut(s)	149, 216, 809, 938, 1093, 1355, 1721, 1785
HpaII	CCGG	3 cut(s)	630, 1206, 1467
HphI	GGTGA	4 cut(s)	1004, 1036, 1739, 1814
Hpy166II	GTNNAC	4 cut(s)	674, 1306, 1429, 1730
Hpy8I	GTNNAC	4 cut(s)	674, 1306, 1429, 1730
HpyAV	CCTTC	4 cut(s)	148, 530, 899, 1473
HpyCH4III	ACNGT	3 cut(s)	9, 563, 1518
HpyCH4IV	ACGT	3 cut(s)	494, 1105, 1147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 209, 1297, 1537, 1679
HpyF3I	CTNAG	6 cut(s)	579, 737, 1184, 1231, 1340, 1545
HpySE526I	ACGT	3 cut(s)	494, 1105, 1147
Kpn2I	TCCGGA	2 cut(s)	1205, 1466
Ksp22I	TGATCA	1 cut(s)	1804
Kzo9I	GATC	4 cut(s)	1009, 1180, 1554, 1804
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	4 cut(s)	897, 1202, 1633, 1694
LweI	GCATC	3 cut(s)	212, 1122, 1576
MaeI	CTAG	6 cut(s)	617, 665, 918, 1173, 1424, 1443
MaeII	ACGT	3 cut(s)	494, 1105, 1147
MaeIII	GTNAC	5 cut(s)	689, 925, 946, 1125, 1445
MalI	GATC	4 cut(s)	1011, 1182, 1556, 1806
MboI	GATC	4 cut(s)	1009, 1180, 1554, 1804
MboII	GAAGA	6 cut(s)	383, 933, 1079, 1082, 1508, 1574
MfeI	CAATTG	1 cut(s)	697
MlyI	GAGTC	2 cut(s)	1087, 1364
MmeI	TCCRAC	2 cut(s)	1014, 1385
Mph1103I	ATGCAT	1 cut(s)	1302
MroI	TCCGGA	2 cut(s)	1205, 1466
MseI	TTAA	6 cut(s)	282, 341, 440, 798, 1419, 1629
MslI	CAYNNNNRTG	1 cut(s)	1299
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	3 cut(s)	630, 1206, 1467
MspR9I	CCNGG	3 cut(s)	251, 708, 1571
MunI	CAATTG	1 cut(s)	697
Mva1269I	GAATGC	2 cut(s)	592, 1368
MvaI	CCWGG	3 cut(s)	251, 708, 1571
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	161, 209, 1297, 1537, 1679
NdeI	CATATG	2 cut(s)	730, 1522
NdeII	GATC	4 cut(s)	1009, 1180, 1554, 1804
NlaIV	GGNNCC	1 cut(s)	1698
NmeAIII	GCCGAG	1 cut(s)	1699
NmuCI	GTSAC	1 cut(s)	946
NruI	TCGCGA	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	1302
NspI	RCATGY	4 cut(s)	1269, 1300, 1304, 1581
PaeI	GCATGC	1 cut(s)	1581
PasI	CCCWGGG	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	249
PciI	ACATGT	1 cut(s)	1265
PctI	GAATGC	2 cut(s)	592, 1368
PfeI	GAWTC	6 cut(s)	149, 216, 809, 938, 1721, 1785
PflMI	CCANNNNNTGG	2 cut(s)	531, 1021
PfoI	TCCNGGA	1 cut(s)	1569
PkrI	GCNGC	5 cut(s)	727, 912, 1192, 1648, 1684
PleI	GAGTC	2 cut(s)	1087, 1363
PpsI	GAGTC	2 cut(s)	1087, 1363
PscI	ACATGT	1 cut(s)	1265
PshBI	ATTAAT	1 cut(s)	798
Psp1406I	AACGTT	1 cut(s)	1105
Psp6I	CCWGG	3 cut(s)	249, 706, 1569
PspGI	CCWGG	3 cut(s)	249, 706, 1569
PspN4I	GGNNCC	1 cut(s)	1698
PspPI	GGNCC	3 cut(s)	1199, 1344, 1696
PsrI	GAACNNNNNNTAC	2 cut(s)	1764, 1796
PstNI	CAGNNNCTG	1 cut(s)	1123
PvuII	CAGCTG	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	308
RsaI	GTAC	5 cut(s)	136, 560, 703, 1059, 1515
RsaNI	GTAC	5 cut(s)	135, 559, 702, 1058, 1514
RseI	CAYNNNNRTG	1 cut(s)	1299
SaqAI	TTAA	6 cut(s)	282, 341, 440, 798, 1419, 1629
SatI	GCNGC	5 cut(s)	726, 911, 1191, 1647, 1683
Sau3AI	GATC	4 cut(s)	1009, 1180, 1554, 1804
Sau96I	GGNCC	3 cut(s)	1199, 1344, 1696
SchI	GAGTC	2 cut(s)	1087, 1364
ScrFI	CCNGG	3 cut(s)	251, 708, 1571
SfaNI	GCATC	3 cut(s)	212, 1122, 1576
SfcI	CTRYAG	1 cut(s)	5
SinI	GGWCC	1 cut(s)	1199
SmiMI	CAYNNNNRTG	1 cut(s)	1299
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SpeI	ACTAGT	2 cut(s)	664, 1423
SphI	GCATGC	1 cut(s)	1581
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	726
SspMI	CTAG	6 cut(s)	617, 665, 918, 1173, 1424, 1443
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	249, 706, 1569
TaaI	ACNGT	3 cut(s)	9, 563, 1518
TaiI	ACGT	3 cut(s)	497, 1108, 1150
TaqI	TCGA	2 cut(s)	1008, 1783
TatI	WGTACW	2 cut(s)	558, 1057
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	6 cut(s)	149, 216, 809, 938, 1721, 1785
Tru1I	TTAA	6 cut(s)	282, 341, 440, 798, 1419, 1629
Tru9I	TTAA	6 cut(s)	282, 341, 440, 798, 1419, 1629
TscAI	CASTG	6 cut(s)	240, 859, 951, 1192, 1293, 1498
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	4 cut(s)	910, 1190, 1646, 1682
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	6 cut(s)	132, 208, 488, 791, 848, 1761
TspRI	CASTG	6 cut(s)	240, 859, 951, 1192, 1293, 1498
Van91I	CCANNNNNTGG	2 cut(s)	531, 1021
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	1199
VspI	ATTAAT	1 cut(s)	798
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	3 cut(s)	301, 507, 1651
XceI	RCATGY	4 cut(s)	1269, 1300, 1304, 1581
XspI	CTAG	6 cut(s)	617, 665, 918, 1173, 1424, 1443
Zsp2I	ATGCAT	1 cut(s)	1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.