Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007946

Physical Location & Seq

Genomic Coordinates Forward (+)

8447164 .. 8451365

Gene Structure 4202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0094700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCCGTCAGGTGCCAAGAAGAGAAAGGCCGCCAAGAAAAAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAATTCATCAACCAGCAAAAGCAACCCTCAAGGAGACGTAAGCTCTAAACCTCAAGCTAAAGAGTGGAGACAGTCCGTAGAGGGAGAATCTAGTGACGCAGAGGCTGTTCCGAAAGATGGTGGTGTTAGAATTGAGAGGGATTCGAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAATTAAAGGCTCGAGTAGTAGCAGTAGCAGTGATAGGAGTAGTTCAGATGACGAGTCTCGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGGTGATGCTACCGTTTCGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAACTCGGTTGATTCTTTACTAGCACAAGTGACTCACTCTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTGCAAGTTTAGTTGCAGAGAAGGCCCCTTCACTTGATTCTGATAAGCCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCGTTGGAGAGTGGTGCAGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGACAAAATCGAGAGTATAGTGTGTCCCCCGCTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTATGTGTGGTGGAATCTGTAACTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCCGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGTAGCTCCTGCCCCACGAGTGGTGGAAAAAACTTCTTGCTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCCAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ

Protein Analysis

354

Amino Acids

37.05

Weight (kDa)

5.9

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04390
fragaria_vesca	FvH4_3g15860
malus_domestica	MD05G1219300.v1.1
prunus_persica	Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1 Prupe.4G140600_v2.0.a1
pyrus_communis	pycom05g20050 pycom05g20060
rosa_chinensis	RchiOBHm_Chr5g0026671
rosa_laevigata	RLG00000032945
rosa_multiflora	Rmu_co8501061.1_g000001 Rmu_sc0004490.1_g000009
rosa_roxburghii	Rroxscaffold_1G00052790
rosa_rugosa	Rorug05G0094700 Rorug05G0094700
rosa_samantha	Rh5AG188300 Rh5BG184600 Rh5CG204500 Rh5DG186900
rosa_wichuraiana	Rw5G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	2 cut(s)	11, 454
AccBSI	CCGCTC	1 cut(s)	908
AciI	CCGC	4 cut(s)	30, 758, 906, 1029
AclWI	GGATC	2 cut(s)	924, 937
AcsI	RAATTY	3 cut(s)	73, 948, 1032
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	5 cut(s)	69, 188, 641, 893, 997
AgsI	TTSAA	1 cut(s)	332
AhlI	ACTAGT	1 cut(s)	914
AjiI	CACGTC	1 cut(s)	1042
AjnI	CCWGG	1 cut(s)	1055
AjuI	GAANNNNNNNTTGG	4 cut(s)	482, 514, 524, 556
AluBI	AGCT	4 cut(s)	114, 128, 461, 983
AluI	AGCT	4 cut(s)	114, 128, 461, 983
Alw26I	GTCTC	4 cut(s)	99, 133, 324, 904
AlwI	GGATC	2 cut(s)	924, 937
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	4 cut(s)	27, 492, 534, 576
ApeKI	GCWGC	1 cut(s)	1026
ApoI	RAATTY	3 cut(s)	73, 948, 1032
AspS9I	GGNCC	3 cut(s)	493, 535, 577
AsuHPI	GGTGA	2 cut(s)	365, 619
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BamHI	GGATCC	1 cut(s)	929
BanI	GGYRCC	2 cut(s)	11, 454
BauI	CACGAG	2 cut(s)	321, 993
BbsI	GAAGAC	3 cut(s)	473, 515, 557
BbvI	GCAGC	1 cut(s)	1013
BccI	CCATC	3 cut(s)	182, 841, 895
BciT130I	CCWGG	1 cut(s)	1057
BcoDI	GTCTC	4 cut(s)	99, 133, 324, 904
BcuI	ACTAGT	1 cut(s)	914
BfaI	CTAG	6 cut(s)	162, 387, 419, 647, 915, 977
BfuAI	ACCTGC	1 cut(s)	391
BglI	GCCNNNNNGGC	2 cut(s)	500, 542
BisI	GCNGC	2 cut(s)	30, 1027
BlsI	GCNGC	2 cut(s)	31, 1028
Bme1390I	CCNGG	1 cut(s)	1057
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	1042
BmgT120I	GGNCC	3 cut(s)	493, 535, 577
BmiI	GGNNCC	8 cut(s)	13, 226, 456, 495, 537, 579, 931, 1054
BmrFI	CCNGG	1 cut(s)	1057
BmsI	GCATC	3 cut(s)	346, 788, 913
BpiI	GAAGAC	3 cut(s)	473, 515, 557
BpmI	CTGGAG	2 cut(s)	618, 1039
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	84, 108
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 188, 641, 893, 997
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	1057
BseLI	CCNNNNNNNGG	5 cut(s)	69, 188, 641, 893, 997
BseMII	CTCAG	3 cut(s)	453, 495, 537
BseNI	ACTGG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	1013
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	4 cut(s)	29, 494, 536, 578
BshNI	GGYRCC	2 cut(s)	11, 454
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	5 cut(s)	69, 188, 641, 893, 997
BsmAI	GTCTC	4 cut(s)	99, 133, 324, 904
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	738
BsnI	GGCC	4 cut(s)	29, 494, 536, 578
BsoBI	CYCGRG	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	651, 929
BspACI	CCGC	4 cut(s)	30, 758, 906, 1029
BspANI	GGCC	4 cut(s)	29, 494, 536, 578
BspCNI	CTCAG	3 cut(s)	454, 496, 538
BspLI	GGNNCC	8 cut(s)	13, 226, 456, 495, 537, 579, 931, 1054
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	924, 937
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	11, 454
BsrBI	CCGCTC	1 cut(s)	908
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	673
BssMI	GATC	2 cut(s)	651, 929
BssSI	CACGAG	2 cut(s)	321, 993
Bst2BI	CACGAG	2 cut(s)	321, 993
Bst2UI	CCWGG	1 cut(s)	1057
Bst4CI	ACNGT	6 cut(s)	144, 364, 613, 644, 664, 790
Bst6I	CTCTTC	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	243, 971
BstDEI	CTNAG	3 cut(s)	462, 504, 546
BstKTI	GATC	2 cut(s)	654, 932
BstMAI	GTCTC	4 cut(s)	99, 133, 324, 904
BstMBI	GATC	2 cut(s)	651, 929
BstMWI	GCNNNNNNNGC	6 cut(s)	491, 500, 533, 542, 575, 1023
BstNI	CCWGG	1 cut(s)	1057
BstSCI	CCNGG	1 cut(s)	1055
BstV1I	GCAGC	1 cut(s)	1013
BstV2I	GAAGAC	3 cut(s)	473, 515, 557
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
BsuRI	GGCC	4 cut(s)	29, 494, 536, 578
BtrI	CACGTC	1 cut(s)	1042
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	243, 971
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	3 cut(s)	493, 535, 577
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	660
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	3 cut(s)	462, 504, 546
DpnI	GATC	2 cut(s)	653, 931
DpnII	GATC	2 cut(s)	651, 929
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	3 cut(s)	493, 535, 577
EcoRI	GAATTC	2 cut(s)	73, 1032
EcoRII	CCWGG	1 cut(s)	1055
Esp3I	CGTCTC	1 cut(s)	99
FaiI	YATR	3 cut(s)	746, 841, 1063
FaqI	GGGAC	1 cut(s)	738
FauI	CCCGC	2 cut(s)	765, 913
Fnu4HI	GCNGC	2 cut(s)	30, 1027
Fsp4HI	GCNGC	2 cut(s)	30, 1027
FspBI	CTAG	6 cut(s)	162, 387, 419, 647, 915, 977
GluI	GCNGC	2 cut(s)	30, 1027
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	2 cut(s)	618, 1039
HaeIII	GGCC	4 cut(s)	29, 494, 536, 578
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	176
HincII	GTYRAC	2 cut(s)	400, 640
HindII	GTYRAC	2 cut(s)	400, 640
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	2 cut(s)	365, 619
Hpy166II	GTNNAC	3 cut(s)	400, 616, 640
Hpy188I	TCNGA	8 cut(s)	60, 183, 310, 370, 595, 786, 946, 964
Hpy188III	TCNNGA	4 cut(s)	252, 739, 953, 1037
Hpy8I	GTNNAC	3 cut(s)	400, 616, 640
HpyCH4III	ACNGT	6 cut(s)	144, 364, 613, 644, 664, 790
HpyCH4IV	ACGT	2 cut(s)	108, 1041
HpyCH4V	TGCA	5 cut(s)	485, 527, 557, 569, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	491, 500, 533, 542, 575, 1023
HpyF3I	CTNAG	3 cut(s)	462, 504, 546
HpySE526I	ACGT	2 cut(s)	108, 1041
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	651, 929
LmnI	GCTCC	2 cut(s)	988, 1058
Lsp1109I	GCAGC	1 cut(s)	1013
LweI	GCATC	3 cut(s)	346, 788, 913
MaeI	CTAG	6 cut(s)	162, 387, 419, 647, 915, 977
MaeII	ACGT	2 cut(s)	108, 1041
MaeIII	GTNAC	4 cut(s)	164, 427, 607, 856
MalI	GATC	2 cut(s)	653, 931
MbiI	CCGCTC	1 cut(s)	908
MboI	GATC	2 cut(s)	651, 929
MboII	GAAGA	4 cut(s)	31, 478, 520, 562
MflI	RGATCY	1 cut(s)	929
MluCI	AATT	6 cut(s)	73, 201, 264, 762, 948, 1032
MlyI	GAGTC	2 cut(s)	326, 424
MmeI	TCCRAC	2 cut(s)	660, 809
MnlI	CCTC	9 cut(s)	108, 132, 145, 166, 201, 214, 364, 445, 984
MseI	TTAA	3 cut(s)	267, 399, 936
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	1057
MvaI	CCWGG	1 cut(s)	1057
MwoI	GCNNNNNNNGC	6 cut(s)	491, 500, 533, 542, 575, 1023
NdeII	GATC	2 cut(s)	651, 929
NlaIV	GGNNCC	8 cut(s)	13, 226, 456, 495, 537, 579, 931, 1054
NmuCI	GTSAC	3 cut(s)	164, 427, 607
NspV	TTCGAA	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	1055
PkrI	GCNGC	2 cut(s)	31, 1028
PleI	GAGTC	2 cut(s)	325, 424
PpsI	GAGTC	2 cut(s)	325, 424
Psp6I	CCWGG	1 cut(s)	1055
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	1055
PspN4I	GGNNCC	8 cut(s)	13, 226, 456, 495, 537, 579, 931, 1054
PspPI	GGNCC	3 cut(s)	493, 535, 577
PspXI	VCTCGAGB	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	838
SaqAI	TTAA	3 cut(s)	267, 399, 936
SatI	GCNGC	2 cut(s)	30, 1027
Sau3AI	GATC	2 cut(s)	651, 929
Sau96I	GGNCC	3 cut(s)	493, 535, 577
SchI	GAGTC	2 cut(s)	326, 424
ScrFI	CCNGG	1 cut(s)	1057
SfaNI	GCATC	3 cut(s)	346, 788, 913
Sfr274I	CTCGAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	838
SmlI	CTYRAG	3 cut(s)	99, 123, 274
SmoI	CTYRAG	3 cut(s)	99, 123, 274
SpeI	ACTAGT	1 cut(s)	914
Sse9I	AATT	6 cut(s)	73, 201, 264, 762, 948, 1032
SsiI	CCGC	4 cut(s)	30, 758, 906, 1029
SspI	AATATT	1 cut(s)	959
SspMI	CTAG	6 cut(s)	162, 387, 419, 647, 915, 977
StyD4I	CCNGG	1 cut(s)	1055
TaaI	ACNGT	6 cut(s)	144, 364, 613, 644, 664, 790
TaiI	ACGT	2 cut(s)	111, 1044
TaqI	TCGA	3 cut(s)	215, 275, 738
TasI	AATT	6 cut(s)	73, 201, 264, 762, 948, 1032
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	267, 399, 936
Tru9I	TTAA	3 cut(s)	267, 399, 936
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	3 cut(s)	164, 427, 607
TseI	GCWGC	1 cut(s)	1026
Tsp45I	GTSAC	3 cut(s)	164, 427, 607
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	3 cut(s)	73, 948, 1032
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	6 cut(s)	162, 387, 419, 647, 915, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.