Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519545.1

Orthogroup ID

OG0006868

Physical Location & Seq

Genomic Coordinates Reverse (-)

2772 .. 5084

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519545.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggacggcgacaaggacacacgcgatccgggactcaccgacttccccaccgagccgagctgggacagtccttacttcttcagcaacgatcgtgacaccaccgtactaagcgaattcgggtggaatttcagccccgacgaccagatcggcgccgacgacaggtccgatttggcgggaagcagcactactactactctcgcggaacagtttccagaaagaagcagtaatactaactccgacccggcccccgtggtcggatctgtttcgtcaagctctacagaggatccgccggagaggtctactggctccggctccggcggcacaccacctcccgagacaccgagtagcactacgaaggtgaataaaaagaaggggcagaagcgaatccggcagccaagatttgcgtttatgactaagagtgaagttgatcatctcgaggatggctaccgttggcggaaatatggacagaaggctgttaagaatagcccatatccaaggagctactatcggtgcacaaatagcaaatgcactgtgaagaaaagggttgaacgttcctctgaagatccaacgacggtaattacgacgtatgaagggcaacactgtcatcataccgttgcatttccccgcggcggcgggggagtgaatattattagtcatgatcaatctggctttgccgcaggaagccagttaatgcagcttcctccagtttcgcagttcatgcattatccaacttcaattcaacccagatcacaaattagtccaactcataatttgacagtaggagggtcgcagtcgcaccgattagtccgggctggcggtactcattaccatcatgatcaagcagctgggggatcccagtgcattattaatccaaatcatgagccactcccagtagtaccagttcctacagatgaagggcttcttggggacattgtacctcctggaatgcgtaatccgttcgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

322

Amino Acids

35.1

Weight (kDa)

6.17

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69310 AT1G69310 AT1G69310 AT1G69310
fragaria_vesca	FvH4_4g30360 FvH4_4g30360 FvH4_4g30360 FvH4_4g30360 FvH4_4g30360
malus_domestica	MD13G1064700.v1.1 MD16G1063200.v1.1
prunus_persica	Prupe.1G283500_v2.0.a1
pyrus_communis	pycom16g05540
rosa_chinensis	RchiOBHm_Chr4g0438661
rosa_laevigata	RLG00000006343
rosa_multiflora	Rmu_co8519545.1_g000001 Rmu_sc0006646.1_g000001 Rmu_sc0006646.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379660
rosa_rugosa	Rorug04G0312400
rosa_samantha	Rh4AG362800 Rh4BG374100 Rh4CG388100 Rh4DG368800
rosa_wichuraiana	Rw0G007130 Rw0G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	299
AccII	CGCG	3 cut(s)	24, 200, 627
AclI	AACGTT	1 cut(s)	550
AclWI	GGATC	7 cut(s)	20, 265, 278, 291, 557, 846, 859
AcsI	RAATTY	2 cut(s)	113, 124
AcuI	CTGAAG	2 cut(s)	64, 579
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	4 cut(s)	105, 820, 897, 936
AfiI	CCNNNNNNNGG	4 cut(s)	159, 254, 629, 962
AgsI	TTSAA	3 cut(s)	548, 735, 740
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AluBI	AGCT	5 cut(s)	60, 273, 501, 697, 845
AluI	AGCT	5 cut(s)	60, 273, 501, 697, 845
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	7 cut(s)	20, 265, 278, 291, 557, 846, 859
Ama87I	CYCGRG	2 cut(s)	332, 434
AoxI	GGCC	1 cut(s)	243
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	4 cut(s)	180, 391, 694, 842
ApoI	RAATTY	2 cut(s)	113, 124
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	2 cut(s)	207, 918
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	162, 244
AsuC2I	CCSGG	3 cut(s)	30, 242, 809
AsuHPI	GGTGA	2 cut(s)	28, 370
AvaI	CYCGRG	2 cut(s)	332, 434
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	515
BamHI	GGATCC	2 cut(s)	283, 851
BanI	GGYRCC	1 cut(s)	149
BarI	GAAGNNNNNNTAC	4 cut(s)	169, 201, 211, 243
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	4 cut(s)	192, 403, 706, 854
BccI	CCATC	3 cut(s)	434, 837, 956
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	942
BclI	TGATCA	3 cut(s)	427, 658, 835
BcnI	CCSGG	3 cut(s)	30, 242, 809
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	276, 906
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	8 cut(s)	181, 319, 392, 628, 631, 675, 695, 843
BlsI	GCNGC	8 cut(s)	182, 320, 393, 629, 632, 676, 696, 844
Bme1390I	CCNGG	4 cut(s)	30, 242, 809, 942
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	332, 434
BmgT120I	GGNCC	2 cut(s)	162, 244
BmiI	GGNNCC	6 cut(s)	151, 246, 285, 307, 313, 853
BmrFI	CCNGG	4 cut(s)	30, 242, 809, 942
BmrI	ACTGGG	2 cut(s)	850, 884
BmuI	ACTGGG	2 cut(s)	850, 884
BpmI	CTGGAG	1 cut(s)	687
BpuMI	CCSGG	3 cut(s)	30, 242, 809
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	249, 494, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 254, 629, 962
Bse1I	ACTGG	6 cut(s)	307, 685, 704, 856, 890, 899
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	3 cut(s)	249, 494, 625
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	4 cut(s)	159, 254, 629, 962
BseNI	ACTGG	6 cut(s)	307, 685, 704, 856, 890, 899
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	4 cut(s)	192, 403, 706, 854
BseYI	CCCAGC	2 cut(s)	60, 845
Bsh1236I	CGCG	3 cut(s)	24, 200, 627
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	2 cut(s)	332, 434
BsiSI	CCGG	7 cut(s)	29, 242, 290, 309, 315, 388, 808
BslFI	GGGAC	3 cut(s)	45, 77, 941
BslI	CCNNNNNNNGG	4 cut(s)	159, 254, 629, 962
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	3 cut(s)	45, 77, 941
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	2 cut(s)	332, 434
Bsp1286I	GDGCHC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	245
BspFNI	CGCG	3 cut(s)	24, 200, 627
BspHI	TCATGA	3 cut(s)	655, 832, 877
BspLI	GGNNCC	6 cut(s)	151, 246, 285, 307, 313, 853
BspPI	GGATC	7 cut(s)	20, 265, 278, 291, 557, 846, 859
BspT107I	GGYRCC	1 cut(s)	149
BsrI	ACTGG	6 cut(s)	307, 685, 704, 856, 890, 899
BssECI	CCNNGG	3 cut(s)	249, 494, 625
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	9 cut(s)	68, 103, 207, 449, 532, 574, 602, 613, 778
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	814
BstDEI	CTNAG	2 cut(s)	107, 414
BstDSI	CCRYGG	2 cut(s)	249, 625
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	3 cut(s)	24, 200, 627
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	329
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 388, 519, 718
BstNI	CCWGG	1 cut(s)	942
BstSCI	CCNGG	4 cut(s)	28, 240, 807, 940
BstSFI	CTRYAG	2 cut(s)	276, 906
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	3 cut(s)	24, 200, 627
BstV1I	GCAGC	4 cut(s)	192, 403, 706, 854
BstX2I	RGATCY	4 cut(s)	257, 283, 562, 851
BstYI	RGATCY	4 cut(s)	257, 283, 562, 851
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	249, 625
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	528, 598, 863
Cac8I	GCNNGC	1 cut(s)	814
CciI	TCATGA	3 cut(s)	655, 832, 877
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	162, 244
Cfr42I	CCGCGG	1 cut(s)	628
Csp6I	GTAC	4 cut(s)	104, 819, 896, 935
CviAII	CATG	4 cut(s)	656, 718, 833, 878
CviQI	GTAC	4 cut(s)	104, 819, 896, 935
DdeI	CTNAG	2 cut(s)	107, 414
DinI	GGCGCC	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EciI	GGCGGA	2 cut(s)	276, 469
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	64, 579
Eco88I	CYCGRG	2 cut(s)	332, 434
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	1 cut(s)	494
EcoT22I	ATGCAT	1 cut(s)	723
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	4 cut(s)	659, 721, 836, 881
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	3 cut(s)	45, 77, 941
FatI	CATG	4 cut(s)	655, 717, 832, 877
FauI	CCCGC	3 cut(s)	166, 626, 632
FbaI	TGATCA	3 cut(s)	427, 658, 835
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	8 cut(s)	181, 319, 392, 628, 631, 675, 695, 843
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	8 cut(s)	181, 319, 392, 628, 631, 675, 695, 843
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	8 cut(s)	181, 319, 392, 628, 631, 675, 695, 843
GsaI	CCCAGC	2 cut(s)	64, 849
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	7 cut(s)	29, 242, 290, 309, 315, 388, 808
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	659, 721, 836, 881
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	33, 384
HpaII	CCGG	7 cut(s)	29, 242, 290, 309, 315, 388, 808
HphI	GGTGA	2 cut(s)	28, 370
Hpy166II	GTNNAC	2 cut(s)	300, 513
Hpy188I	TCNGA	4 cut(s)	166, 238, 257, 559
Hpy188III	TCNNGA	7 cut(s)	92, 212, 332, 434, 656, 833, 878
Hpy8I	GTNNAC	2 cut(s)	300, 513
Hpy99I	CGWCG	4 cut(s)	140, 158, 574, 586
HpyAV	CCTTC	5 cut(s)	349, 364, 463, 584, 908
HpyCH4III	ACNGT	9 cut(s)	68, 103, 207, 449, 532, 574, 602, 613, 778
HpyCH4IV	ACGT	2 cut(s)	550, 584
HpyCH4V	TGCA	6 cut(s)	513, 528, 617, 694, 721, 861
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 388, 519, 718
HpyF3I	CTNAG	2 cut(s)	107, 414
HpySE526I	ACGT	2 cut(s)	550, 584
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	659, 721, 836, 881
HspAI	GCGC	1 cut(s)	150
KasI	GGCGCC	1 cut(s)	149
Ksp22I	TGATCA	3 cut(s)	427, 658, 835
KspI	CCGCGG	1 cut(s)	628
LmnI	GCTCC	3 cut(s)	311, 317, 498
Lsp1109I	GCAGC	4 cut(s)	192, 403, 706, 854
MaeII	ACGT	2 cut(s)	550, 584
MaeIII	GTNAC	1 cut(s)	92
MboII	GAAGA	3 cut(s)	70, 547, 572
MflI	RGATCY	4 cut(s)	257, 283, 562, 851
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	6 cut(s)	113, 124, 576, 735, 753, 769
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	5 cut(s)	235, 261, 590, 752, 785
MnlI	CCTC	8 cut(s)	274, 288, 339, 430, 565, 711, 776, 948
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	2 cut(s)	207, 918
MseI	TTAA	3 cut(s)	477, 689, 867
MspA1I	CMGCKG	2 cut(s)	627, 845
MspI	CCGG	7 cut(s)	29, 242, 290, 309, 315, 388, 808
MspR9I	CCNGG	4 cut(s)	30, 242, 809, 942
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	942
MvnI	CGCG	3 cut(s)	24, 200, 627
MwoI	GCNNNNNNNGC	4 cut(s)	318, 388, 519, 718
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	3 cut(s)	30, 242, 809
NlaIII	CATG	4 cut(s)	659, 721, 836, 881
NlaIV	GGNNCC	6 cut(s)	151, 246, 285, 307, 313, 853
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	723
PaeR7I	CTCGAG	1 cut(s)	434
PagI	TCATGA	3 cut(s)	655, 832, 877
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 162, 578
PctI	GAATGC	1 cut(s)	951
PdmI	GAANNNNTTC	2 cut(s)	207, 918
PfeI	GAWTC	1 cut(s)	384
PfoI	TCCNGGA	2 cut(s)	28, 940
PkrI	GCNGC	8 cut(s)	182, 320, 393, 629, 632, 676, 696, 844
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	27
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	940
PspFI	CCCAGC	2 cut(s)	60, 845
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	6 cut(s)	151, 246, 285, 307, 313, 853
PspPI	GGNCC	2 cut(s)	162, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	885, 917
PsuI	RGATCY	4 cut(s)	257, 283, 562, 851
PvuI	CGATCG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	4 cut(s)	105, 820, 897, 936
RsaNI	GTAC	4 cut(s)	104, 819, 896, 935
SacII	CCGCGG	1 cut(s)	628
SaqAI	TTAA	3 cut(s)	477, 689, 867
SatI	GCNGC	8 cut(s)	181, 319, 392, 628, 631, 675, 695, 843
Sau96I	GGNCC	2 cut(s)	162, 244
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	4 cut(s)	30, 242, 809, 942
SduI	GDGCHC	1 cut(s)	515
SfcI	CTRYAG	2 cut(s)	276, 906
SfoI	GGCGCC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	628
SinI	GGWCC	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	6 cut(s)	113, 124, 576, 735, 753, 769
SspDI	GGCGCC	1 cut(s)	149
SspI	AATATT	1 cut(s)	646
StyD4I	CCNGG	4 cut(s)	28, 240, 807, 940
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	9 cut(s)	68, 103, 207, 449, 532, 574, 602, 613, 778
TaiI	ACGT	2 cut(s)	553, 587
TaqI	TCGA	2 cut(s)	435, 960
TasI	AATT	6 cut(s)	113, 124, 576, 735, 753, 769
TauI	GCSGC	4 cut(s)	321, 630, 633, 677
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	3 cut(s)	477, 689, 867
Tru9I	TTAA	3 cut(s)	477, 689, 867
TscAI	CASTG	3 cut(s)	535, 605, 863
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	4 cut(s)	180, 391, 694, 842
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	603, 706, 927
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	3 cut(s)	535, 605, 863
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	2 cut(s)	113, 124
XhoI	CTCGAG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	299
XmnI	GAANNNNTTC	2 cut(s)	207, 918
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.