Rmu_sc0000042.1_g000006

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000042.1
OG0005506
Physical Location & Seq
Forward (+)
23071 .. 29257
6187 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2904 bp
atgctagtcacagatcactctcgtgaatcaagatgggatgagtttggttctttaattgtggctggtggggaaaagtttcaacacccagtgtcctccttagtggctgaattacttgcaattaaggctggtctgggtttggtggtagaacgaagactaaggaatgtagtggtggagtctgattgcttggacgctattcatctacttaattcaaaagagagatgtttggctcctgaaggaggacttgttgaagacattcaaagtaacatggctcttctcaatattactaccatctatcatgttcgacgtgacggaaatatggttgctcgtgcaattgggaattatgtagcccaaaataataggcgtttagtttggttagaggttgggcctgatcggctcatgtcacttatcgttaaagataagactttagccgggttatcagttagggagttgagtatttctccgactttggattctagggaggttggagagtatacactgtgtcaacctcatgatctgtttatggctcaagccacttgctttaagcacaggagtagaggaggtgagatggacacagcatccataaaatgtctaatcaatagcatatctcgattggttcttctagtttcatgccaaacagtaaagtctgtgcctattcagaaggtttacagaaccatagctgatgtattgaagcttttgaagccgttgcttgatgaagtggttgattacaatattccttcagatgacattctatttcaagagtgtgaagaattggatatggctgtcaatgaagctagggaattcatggaaaactggtctccaaagtcgagcaaactattaagtgctttgcggagtgagccattgttgataaagatacaaaattcatcactcaagatttgctgtacattaagtagattattacagtcatcttcatctgcttcaggtttaatgggtctacagcaatgtatgcaggaaattgaacgtttgaagcctgaaagagtaacagaatacttagaagaggctctgaaaagtcaaacaaaagatttcatgccttccatcaaatatcttatgaaaattactgaattgcttagcttgacttccagccaagaactgttgaaagaaagtattgctgtagagaaggaaagaattactgtggaagttcgtgatgttagaggggaactagatcaaatcaaccaaattgtgattcttgtctctcatattcgcgaatgcatggttaaaagtgaccgcattaccgcatctggcatcccggtcccttcatacttccgctgccctttgtcttcagaactcattttggatccggtgattgtagcttcgggccaaacatatgagagaactgccatacaaaaatggcttgatcatgggttgattatctgcccaatgacccgtcagaggctgacacatacaaacctcattcccaattactcattcaaagttatggtagaaagttggtgtcaagaaaataatattaaacttgcgacgaactctgactgcactaatgctatcactgtcccatctccattaggtcacatctctcctgaaggtttaattcacacagatacccagtactccatccacagtagcaattcgacatcaagatcctctgccgaagttgagaagcaaagaaaagatgtatctcctagattgagtggagaaaagtccaatggatgccctagcggtgagaaagaccagtcatcaccaaaacagtcatatattcatagcaggagtgaatcagcctcaagtactgtttccagtgttgattatatgcctccagcatctattaaggtgtcagggatatccaataagcatgaaaaggataatgagttttctggagaaattacatctgagcatcctgttgcttatgttccaaataaagaatcaggaatttcccctgggctatcaggaaagaagtctcacctttccaaaggaaatgtagaactggcatcatggcatgacagccctaattacccaaacaaacagctgcttccattttctagctcagaatctgatggatccacgacagcatcccatgtcatgaaattagttgaagacctcaagagccaattggacgaagtgcaaactagggctgcggaagaattgcggcttcttgcaaagcacaatatggataatcgcattattataggccaatgtgatgctatcacacccttgctttcgctgctatattcagagatgaagttaacgcaagagcatgctgtgacagctcttttgaatttatcaattaatgaagacaataaggccatgattgcagaagcaggagcaattgaaccgctcatccatgttctgaaaactgggaatgatggtgccaaagaaaattcagctgcagctttattcagcctctctgtcttggatgaatacaaggcaaaaattggccgttctggtgcagtgaaggccttggttgatcttctaggctctgggactcttagagggaagaaagatgctgctactgcactgtttaatctctcaatttttcatgaaaataaggctcgcctagttcaagctggggcagtgaagtatcttattgagttgatggaccctgacacagggatggctgacaaggctgttgctcttctggcaaatttgtccaccattgcagaggggcgcttagcaattgcacggggaggaggaattccattactagttgaggtcgtggaatcaggctctcagaggggaaaggaaaactctgcctccattctgttgcaactgtgccttcatagtccaaagttttgtactatggttcttcaggaaggagctgtccctcccctggtcgctttatctcagtctggcagtccaagagcaaaggaaaaggcacagcagcttctcagtcacttccggaatcagagagaaggggctatggggaagggaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

967

Amino Acids

106.13

Weight (kDa)

6.35

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 15 - 112 2.2e-12 Reverse transcriptase-like
PUB2_N PF25240 191 - 328 1.9e-50 PUB2-like, N-terminal domain
U-box PF04564 423 - 494 1.4e-22 U-box domain
ARM_ARMC5 PF24768 682 - 855 1.8e-09 ARMC5
ARM_PUB PF25598 683 - 957 1.7e-25 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 714 - 916 4.8e-14 ARMC5
Arm PF00514 753 - 792 4.4e-06 Armadillo/beta-catenin-like repeat
Arm PF00514 796 - 833 7.3e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2336
AccBSI CCGCTC 1 cut(s) 2305
AccI GTMKAC 2 cut(s) 491, 952
AccII CGCG 1 cut(s) 1221
AccIII TCCGGA 1 cut(s) 2865
AciI CCGC 8 cut(s) 847, 1243, 1251, 1282, 1692, 2105, 2116, 2303
AclI AACGTT 1 cut(s) 979
AclWI GGATC 5 cut(s) 1307, 1320, 1608, 2022, 2035
AcoI YGGCCR 1 cut(s) 2404
AcsI RAATTY 7 cut(s) 797, 877, 1899, 2245, 2347, 2611, 2661
AcuI CTGAAG 6 cut(s) 252, 720, 921, 1281, 1575, 2759
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 4 cut(s) 901, 1583, 1759, 2764
AfiI CCNNNNNNNGG 4 cut(s) 236, 1407, 2576, 2797
AhlI ACTAGT 1 cut(s) 2671
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 2 cut(s) 1906, 2796
AjuI GAANNNNNNNTTGG 4 cut(s) 1185, 1217, 1427, 1459
AleI CACNNNNGTG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 2292, 2324
Alw26I GTCTC 3 cut(s) 819, 1213, 1932
AlwI GGATC 5 cut(s) 1307, 1320, 1608, 2022, 2035
AlwNI CAGNNNCTG 2 cut(s) 1411, 2021
Aor13HI TCCGGA 1 cut(s) 2865
AoxI GGCC 6 cut(s) 383, 1333, 2158, 2271, 2404, 2424
ApeKI GCWGC 8 cut(s) 1284, 1996, 2102, 2191, 2354, 2357, 2474, 2848
ApoI RAATTY 7 cut(s) 797, 877, 1899, 2245, 2347, 2611, 2661
ArsI GACNNNNNNTTYG 2 cut(s) 2224, 2256
AseI ATTAAT 1 cut(s) 2256
Asp700I GAANNNNTTC 2 cut(s) 75, 252
AspLEI GCGC 1 cut(s) 2637
AspS9I GGNCC 4 cut(s) 383, 1267, 1333, 2566
AsuC2I CCSGG 2 cut(s) 430, 1265
AsuHPI GGTGA 5 cut(s) 572, 1330, 1704, 1706, 1922
AvaII GGWCC 2 cut(s) 1267, 2566
BamHI GGATCC 2 cut(s) 1312, 2027
BanI GGYRCC 1 cut(s) 2336
BauI CACGAG 2 cut(s) 21, 324
BbsI GAAGAC 5 cut(s) 157, 255, 1287, 2070, 2268
BbvI GCAGC 8 cut(s) 1271, 1983, 2089, 2178, 2341, 2369, 2461, 2860
BceAI ACGGC 2 cut(s) 685, 2391
BciT130I CCWGG 2 cut(s) 1908, 2798
BclI TGATCA 1 cut(s) 1372
BcnI CCSGG 2 cut(s) 430, 1265
BcoDI GTCTC 3 cut(s) 819, 1213, 1932
BcuI ACTAGT 1 cut(s) 2671
BfmI CTRYAG 3 cut(s) 953, 1128, 2355
BfoI RGCGCY 1 cut(s) 2638
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 9 cut(s) 1285, 1997, 2103, 2117, 2192, 2355, 2358, 2475, 2849
BlpI GCTNAGC 2 cut(s) 1085, 2638
BlsI GCNGC 9 cut(s) 1286, 1998, 2104, 2118, 2193, 2356, 2359, 2476, 2850
BmcAI AGTACT 2 cut(s) 1583, 1759
Bme1390I CCNGG 4 cut(s) 430, 1265, 1908, 2798
Bme18I GGWCC 2 cut(s) 1267, 2566
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 383, 1267, 1333, 2566
BmiI GGNNCC 6 cut(s) 228, 1269, 1314, 2029, 2338, 2568
BmrFI CCNGG 4 cut(s) 430, 1265, 1908, 2798
BmrI ACTGGG 3 cut(s) 80, 1573, 2334
BmuI ACTGGG 3 cut(s) 80, 1573, 2334
BpiI GAAGAC 5 cut(s) 157, 255, 1287, 2070, 2268
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 2 cut(s) 1770, 1866
Bpu1102I GCTNAGC 2 cut(s) 1085, 2638
BpuEI CTTGAG 4 cut(s) 510, 872, 1738, 2054
BpuMI CCSGG 2 cut(s) 430, 1265
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 4 cut(s) 1906, 1907, 2427, 2796
BsaWI WCCGGW 2 cut(s) 1315, 2865
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 2705, 2735
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 1407, 2576, 2797
Bse1I ACTGG 7 cut(s) 86, 815, 1579, 1705, 1767, 1959, 2329
Bse3DI GCAATG 2 cut(s) 965, 2622
BseAI TCCGGA 1 cut(s) 2865
BseBI CCWGG 2 cut(s) 1908, 2798
BseDI CCNNGG 4 cut(s) 1906, 1907, 2427, 2796
BseLI CCNNNNNNNGG 4 cut(s) 236, 1407, 2576, 2797
BseMI GCAATG 2 cut(s) 965, 2622
BseMII CTCAG 5 cut(s) 1851, 2028, 2711, 2825, 2869
BseNI ACTGG 7 cut(s) 86, 815, 1579, 1705, 1767, 1959, 2329
BseRI GAGGAG 2 cut(s) 570, 2670
BseXI GCAGC 8 cut(s) 1271, 1983, 2089, 2178, 2341, 2369, 2461, 2860
BseYI CCCAGC 1 cut(s) 2534
BsgI GTGCAG 3 cut(s) 1492, 2436, 2466
Bsh1236I CGCG 1 cut(s) 1221
BshFI GGCC 6 cut(s) 385, 1335, 2160, 2273, 2406, 2426
BshNI GGYRCC 1 cut(s) 2336
BsiSI CCGG 4 cut(s) 429, 1265, 1316, 2866
BslFI GGGAC 4 cut(s) 1253, 1511, 2464, 2774
BslI CCNNNNNNNGG 4 cut(s) 236, 1407, 2576, 2797
BsmAI GTCTC 3 cut(s) 819, 1213, 1932
BsmFI GGGAC 4 cut(s) 1253, 1511, 2464, 2774
BsmI GAATGC 1 cut(s) 1229
BsnI GGCC 6 cut(s) 385, 1335, 2160, 2273, 2406, 2426
Bso31I GGTCTC 1 cut(s) 819
Bsp13I TCCGGA 1 cut(s) 2865
Bsp1407I TGTACA 1 cut(s) 899
Bsp143I GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
Bsp1720I GCTNAGC 2 cut(s) 1085, 2638
Bsp68I TCGCGA 1 cut(s) 1221
BspACI CCGC 8 cut(s) 847, 1243, 1251, 1282, 1692, 2105, 2116, 2303
BspANI GGCC 6 cut(s) 385, 1335, 2160, 2273, 2406, 2426
BspCNI CTCAG 5 cut(s) 1852, 2027, 2710, 2824, 2868
BspEI TCCGGA 1 cut(s) 2865
BspFNI CGCG 1 cut(s) 1221
BspHI TCATGA 3 cut(s) 508, 2049, 2506
BspLI GGNNCC 6 cut(s) 228, 1269, 1314, 2029, 2338, 2568
BspMAI CTGCAG 1 cut(s) 2359
BspPI GGATC 5 cut(s) 1307, 1320, 1608, 2022, 2035
BspQI GCTCTTC 2 cut(s) 276, 2607
BspT107I GGYRCC 1 cut(s) 2336
BspTNI GGTCTC 1 cut(s) 819
BsrBI CCGCTC 1 cut(s) 2305
BsrDI GCAATG 2 cut(s) 965, 2622
BsrGI TGTACA 1 cut(s) 899
BsrI ACTGG 7 cut(s) 86, 815, 1579, 1705, 1767, 1959, 2329
BssECI CCNNGG 4 cut(s) 1906, 1907, 2427, 2796
BssMI GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
BssNAI GTATAC 1 cut(s) 492
BssSI CACGAG 2 cut(s) 21, 324
BssT1I CCWWGG 1 cut(s) 2427
Bst1107I GTATAC 1 cut(s) 492
Bst2BI CACGAG 2 cut(s) 21, 324
Bst2UI CCWGG 2 cut(s) 1908, 2798
Bst6I CTCTTC 3 cut(s) 276, 1008, 2607
BstAPI GCANNNNNTGC 1 cut(s) 964
BstAUI TGTACA 1 cut(s) 899
BstC8I GCNNGC 2 cut(s) 2226, 2521
BstENI CCTNNNNNAGG 2 cut(s) 234, 2574
BstFNI CGCG 1 cut(s) 1221
BstH2I RGCGCY 1 cut(s) 2638
BstHHI GCGC 1 cut(s) 2637
BstKTI GATC 9 cut(s) 16, 391, 514, 1183, 1315, 1375, 1616, 2030, 2437
BstMAI GTCTC 3 cut(s) 819, 1213, 1932
BstMBI GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
BstNI CCWGG 2 cut(s) 1908, 2798
BstNSI RCATGY 1 cut(s) 2228
BstSCI CCNGG 4 cut(s) 428, 1263, 1906, 2796
BstSFI CTRYAG 3 cut(s) 953, 1128, 2355
BstUI CGCG 1 cut(s) 1221
BstV1I GCAGC 8 cut(s) 1271, 1983, 2089, 2178, 2341, 2369, 2461, 2860
BstV2I GAAGAC 5 cut(s) 157, 255, 1287, 2070, 2268
BstX2I RGATCY 3 cut(s) 1312, 1613, 2027
BstYI RGATCY 3 cut(s) 1312, 1613, 2027
BstZ17I GTATAC 1 cut(s) 492
BsuRI GGCC 6 cut(s) 385, 1335, 2160, 2273, 2406, 2426
BtrI CACGTC 1 cut(s) 305
BtsI GCAGTG 2 cut(s) 2424, 2547
BtsIMutI CAGTG 7 cut(s) 93, 494, 1521, 1774, 2424, 2483, 2547
BtuMI TCGCGA 1 cut(s) 1221
Cac8I GCNNGC 2 cut(s) 2226, 2521
CaiI CAGNNNCTG 2 cut(s) 1411, 2021
CciI TCATGA 3 cut(s) 508, 2049, 2506
CfoI GCGC 1 cut(s) 2637
Cfr13I GGNCC 4 cut(s) 383, 1267, 1333, 2566
CseI GACGC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 900, 1582, 1758, 2763
CviQI GTAC 4 cut(s) 900, 1582, 1758, 2763
DpnI GATC 9 cut(s) 15, 390, 513, 1182, 1314, 1374, 1615, 2029, 2436
DpnII GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
DraIII CACNNNGTG 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 2404
Eam1104I CTCTTC 3 cut(s) 276, 1008, 2607
EarI CTCTTC 3 cut(s) 276, 1008, 2607
Eco130I CCWWGG 1 cut(s) 2427
Eco147I AGGCCT 1 cut(s) 2426
Eco31I GGTCTC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 1812
Eco47I GGWCC 2 cut(s) 1267, 2566
Eco57I CTGAAG 6 cut(s) 252, 720, 921, 1281, 1575, 2759
EcoNI CCTNNNNNAGG 2 cut(s) 234, 2574
EcoRI GAATTC 2 cut(s) 797, 2661
EcoRII CCWGG 2 cut(s) 1906, 2796
EcoRV GATATC 1 cut(s) 1812
EcoT14I CCWWGG 1 cut(s) 2427
EcoT22I ATGCAT 1 cut(s) 1229
ErhI CCWWGG 1 cut(s) 2427
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 4 cut(s) 1253, 1511, 2464, 2774
FauNDI CATATG 1 cut(s) 1342
FbaI TGATCA 1 cut(s) 1372
FblI GTMKAC 2 cut(s) 491, 952
Fnu4HI GCNGC 9 cut(s) 1285, 1997, 2103, 2117, 2192, 2355, 2358, 2475, 2849
Fsp4HI GCNGC 9 cut(s) 1285, 1997, 2103, 2117, 2192, 2355, 2358, 2475, 2849
GlaI GCGC 1 cut(s) 2636
GluI GCNGC 9 cut(s) 1285, 1997, 2103, 2117, 2192, 2355, 2358, 2475, 2849
GsaI CCCAGC 1 cut(s) 2538
GsuI CTGGAG 2 cut(s) 1770, 1866
HaeII RGCGCY 1 cut(s) 2638
HaeIII GGCC 6 cut(s) 385, 1335, 2160, 2273, 2406, 2426
HapII CCGG 4 cut(s) 429, 1265, 1316, 2866
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 2637
Hin6I GCGC 1 cut(s) 2635
HinP1I GCGC 1 cut(s) 2635
HincII GTYRAC 2 cut(s) 503, 2214
HindII GTYRAC 2 cut(s) 503, 2214
HindIII AAGCTT 1 cut(s) 689
HpaI GTTAAC 1 cut(s) 2214
HpaII CCGG 4 cut(s) 429, 1265, 1316, 2866
HphI GGTGA 5 cut(s) 572, 1330, 1704, 1706, 1922
Hpy166II GTNNAC 6 cut(s) 492, 503, 664, 953, 2214, 2619
Hpy8I GTNNAC 6 cut(s) 492, 503, 664, 953, 2214, 2619
Hpy99I CGWCG 2 cut(s) 306, 1498
HpyCH4IV ACGT 2 cut(s) 304, 979
HpySE526I ACGT 2 cut(s) 304, 979
HspAI GCGC 1 cut(s) 2635
Kpn2I TCCGGA 1 cut(s) 2865
Ksp22I TGATCA 1 cut(s) 1372
KspAI GTTAAC 1 cut(s) 2214
Kzo9I GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
LguI GCTCTTC 2 cut(s) 276, 2607
LmnI GCTCC 3 cut(s) 232, 2291, 2783
Lsp1109I GCAGC 8 cut(s) 1271, 1983, 2089, 2178, 2341, 2369, 2461, 2860
MaeII ACGT 2 cut(s) 304, 979
MaeIII GTNAC 9 cut(s) 7, 260, 305, 399, 997, 1238, 1541, 2230, 2858
MalI GATC 9 cut(s) 15, 390, 513, 1182, 1314, 1374, 1615, 2029, 2436
MbiI CCGCTC 1 cut(s) 2305
MboI GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
MfeI CAATTG 4 cut(s) 330, 2078, 2295, 2643
MflI RGATCY 3 cut(s) 1312, 1613, 2027
MlyI GAGTC 2 cut(s) 182, 2446
MmeI TCCRAC 2 cut(s) 463, 485
Mph1103I ATGCAT 1 cut(s) 1229
MroI TCCGGA 1 cut(s) 2865
MroXI GAANNNNTTC 2 cut(s) 75, 252
MslI CAYNNNNRTG 2 cut(s) 21, 2579
MspA1I CMGCKG 3 cut(s) 1284, 1996, 2354
MspI CCGG 4 cut(s) 429, 1265, 1316, 2866
MspR9I CCNGG 4 cut(s) 430, 1265, 1908, 2798
MunI CAATTG 4 cut(s) 330, 2078, 2295, 2643
Mva1269I GAATGC 1 cut(s) 1229
MvaI CCWGG 2 cut(s) 1908, 2798
MvnI CGCG 1 cut(s) 1221
NciI CCSGG 2 cut(s) 430, 1265
NdeI CATATG 1 cut(s) 1342
NdeII GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
NlaIV GGNNCC 6 cut(s) 228, 1269, 1314, 2029, 2338, 2568
NmuCI GTSAC 7 cut(s) 7, 305, 399, 1238, 1541, 2230, 2858
NruI TCGCGA 1 cut(s) 1221
NsiI ATGCAT 1 cut(s) 1229
NspI RCATGY 1 cut(s) 2228
OliI CACNNNNGTG 1 cut(s) 21
PaeI GCATGC 1 cut(s) 2228
PagI TCATGA 3 cut(s) 508, 2049, 2506
PasI CCCWGGG 1 cut(s) 1907
PceI AGGCCT 1 cut(s) 2426
PciSI GCTCTTC 2 cut(s) 276, 2607
PctI GAATGC 1 cut(s) 1229
PdmI GAANNNNTTC 2 cut(s) 75, 252
PfeI GAWTC 8 cut(s) 26, 470, 1201, 1745, 1892, 2018, 2687, 2869
PkrI GCNGC 9 cut(s) 1286, 1998, 2104, 2118, 2193, 2356, 2359, 2476, 2850
PleI GAGTC 2 cut(s) 181, 2446
PpsI GAGTC 2 cut(s) 181, 2446
PshBI ATTAAT 1 cut(s) 2256
Psp1406I AACGTT 1 cut(s) 979
Psp6I CCWGG 2 cut(s) 1906, 2796
PspFI CCCAGC 1 cut(s) 2534
PspGI CCWGG 2 cut(s) 1906, 2796
PspN4I GGNNCC 6 cut(s) 228, 1269, 1314, 2029, 2338, 2568
PspPI GGNCC 4 cut(s) 383, 1267, 1333, 2566
PstI CTGCAG 1 cut(s) 2359
PstNI CAGNNNCTG 2 cut(s) 1411, 2021
PsuI RGATCY 3 cut(s) 1312, 1613, 2027
PvuII CAGCTG 2 cut(s) 1996, 2354
RruI TCGCGA 1 cut(s) 1221
RsaI GTAC 4 cut(s) 901, 1583, 1759, 2764
RsaNI GTAC 4 cut(s) 900, 1582, 1758, 2763
RseI CAYNNNNRTG 2 cut(s) 21, 2579
SapI GCTCTTC 2 cut(s) 276, 2607
SatI GCNGC 9 cut(s) 1285, 1997, 2103, 2117, 2192, 2355, 2358, 2475, 2849
Sau3AI GATC 9 cut(s) 13, 388, 511, 1180, 1312, 1372, 1613, 2027, 2434
Sau96I GGNCC 4 cut(s) 383, 1267, 1333, 2566
ScaI AGTACT 2 cut(s) 1583, 1759
SchI GAGTC 2 cut(s) 182, 2446
ScrFI CCNGG 4 cut(s) 430, 1265, 1908, 2798
SfcI CTRYAG 3 cut(s) 953, 1128, 2355
SinI GGWCC 2 cut(s) 1267, 2566
SmiMI CAYNNNNRTG 2 cut(s) 21, 2579
SmlI CTYRAG 4 cut(s) 525, 887, 1753, 2069
SmoI CTYRAG 4 cut(s) 525, 887, 1753, 2069
SpeI ACTAGT 1 cut(s) 2671
SphI GCATGC 1 cut(s) 2228
SseBI AGGCCT 1 cut(s) 2426
SsiI CCGC 8 cut(s) 847, 1243, 1251, 1282, 1692, 2105, 2116, 2303
SspI AATATT 3 cut(s) 280, 730, 1483
StuI AGGCCT 1 cut(s) 2426
StyD4I CCNGG 4 cut(s) 428, 1263, 1906, 2796
StyI CCWWGG 1 cut(s) 2427
TaiI ACGT 2 cut(s) 307, 982
TaqI TCGA 4 cut(s) 301, 607, 824, 1604
TatI WGTACW 4 cut(s) 899, 1581, 1757, 2762
TauI GCSGC 1 cut(s) 2119
TfiI GAWTC 8 cut(s) 26, 470, 1201, 1745, 1892, 2018, 2687, 2869
TscAI CASTG 7 cut(s) 93, 501, 1528, 1774, 2424, 2490, 2547
TseFI GTSAC 7 cut(s) 7, 305, 399, 1238, 1541, 2230, 2858
TseI GCWGC 8 cut(s) 1284, 1996, 2102, 2191, 2354, 2357, 2474, 2848
Tsp45I GTSAC 7 cut(s) 7, 305, 399, 1238, 1541, 2230, 2858
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 7 cut(s) 93, 501, 1528, 1774, 2424, 2490, 2547
VpaK11BI GGWCC 2 cut(s) 1267, 2566
VspI ATTAAT 1 cut(s) 2256
XagI CCTNNNNNAGG 2 cut(s) 234, 2574
XapI RAATTY 7 cut(s) 797, 877, 1899, 2245, 2347, 2611, 2661
XceI RCATGY 1 cut(s) 2228
XmiI GTMKAC 2 cut(s) 491, 952
XmnI GAANNNNTTC 2 cut(s) 75, 252
ZrmI AGTACT 2 cut(s) 1583, 1759
Zsp2I ATGCAT 1 cut(s) 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.