Rmu_sc0000096.1_g000023

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000096.1
OG0011823
Physical Location & Seq
Forward (+)
99902 .. 101054
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
atggccaggaacggtgtcgtttcgtggcgaaggaggtcggacaagctcgaaggcttggatctttccagttccgaagaagctcacgtcctcgccgtcgatgacagcctcgtcgatcgcaaggtcattgagcgcttgctcagaatctcctcttgcaaagtgaccgctgtggacagtggtatgagagctctgcaattcctaggtttagacgaggagaagagcacctcggtcggttttgatggcttgaaggtggatctgattatcacggattactgcatgcctggtatgaccggatatgaactgcttaagaaaatcaaggaatccacgacttttaaagagattccggttgtgataatgtcctctgagaacgttttggcgcgcatagacaggtgtttggaagaaggggcagaagatttcatagtgaagccggtgaagttatcggacgtgaaaaggcttaaggattacatgacaaaagacgtcgtcgccggaggagtagaagagagtgggatcaacaagagaaagctacgagaaccccctatcatcaccgtcaccgtcaccgtcaccgtcaccgtcaccgtcaccgtcaccgtcaccgtcaccgtcaccatcaccgccgctttcatcgtcgtcctcgttctcagctccatcgtcgcccacgtcgcttga

Protein Analysis

220

Amino Acids

24.1

Weight (kDa)

5.83

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 29 - 148 2.4e-21 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011823)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59940 AT1G59940
fragaria_vesca FvH4_4g35230
malus_domestica MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica Prupe.1G261500_v2.0.a1
pyrus_communis pycom13g07370 pycom16g07330
rosa_chinensis RchiOBHm_Chr4g0444831
rosa_laevigata RLG00000005797
rosa_multiflora Rmu_sc0000096.1_g000023
rosa_roxburghii Rroxscaffold_5G00385320
rosa_rugosa Rorug04G0355400 Rorug04G0355500
rosa_samantha Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana Rw4G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 477
AccII CGCG 1 cut(s) 376
AciI CCGC 3 cut(s) 162, 609, 612
AclI AACGTT 1 cut(s) 366
AclWI GGATC 3 cut(s) 66, 258, 512
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 474
AfeI AGCGCT 1 cut(s) 131
AflII CTTAAG 2 cut(s) 302, 452
AgsI TTSAA 1 cut(s) 244
AjiI CACGTC 3 cut(s) 85, 442, 655
AjnI CCWGG 2 cut(s) 5, 277
AluBI AGCT 5 cut(s) 46, 80, 185, 520, 639
AluI AGCT 5 cut(s) 46, 80, 185, 520, 639
Alw21I GWGCWC 2 cut(s) 187, 221
AlwI GGATC 3 cut(s) 66, 258, 512
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 3
AspA2I CCTAGG 1 cut(s) 196
AspLEI GCGC 3 cut(s) 132, 376, 378
AvrII CCTAGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 187, 221
BccI CCATC 3 cut(s) 230, 611, 650
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 7, 279
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 133
BfrI CTTAAG 2 cut(s) 302, 452
BisI GCNGC 1 cut(s) 612
BlnI CCTAGG 1 cut(s) 196
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 2 cut(s) 7, 279
BmgBI CACGTC 3 cut(s) 85, 442, 655
BmrFI CCNGG 2 cut(s) 7, 279
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 196, 222
BsaWI WCCGGW 2 cut(s) 287, 340
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 2 cut(s) 7, 279
BseDI CCNNGG 2 cut(s) 196, 222
BseMII CTCAG 3 cut(s) 151, 351, 649
BseNI ACTGG 1 cut(s) 66
BsePI GCGCGC 1 cut(s) 374
BseRI GAGGAG 3 cut(s) 136, 224, 501
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 2 cut(s) 115, 228
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 2 cut(s) 115, 228
BsiHKAI GWGCWC 2 cut(s) 187, 221
BsiSI CCGG 4 cut(s) 288, 341, 425, 483
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 187, 221
Bsp143I GATC 4 cut(s) 58, 112, 250, 504
BspACI CCGC 3 cut(s) 162, 609, 612
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 150, 352, 648
BspFNI CGCG 1 cut(s) 376
BspPI GGATC 3 cut(s) 66, 258, 512
BspQI GCTCTTC 1 cut(s) 209
BspTI CTTAAG 2 cut(s) 302, 452
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 196, 222
BssHII GCGCGC 1 cut(s) 374
BssMI GATC 4 cut(s) 58, 112, 250, 504
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 7, 279
Bst6I CTCTTC 2 cut(s) 209, 489
BstACI GRCGYC 1 cut(s) 474
BstAFI CTTAAG 2 cut(s) 302, 452
BstC8I GCNNGC 3 cut(s) 134, 275, 376
BstDEI CTNAG 3 cut(s) 137, 360, 635
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 3 cut(s) 132, 376, 378
BstKTI GATC 4 cut(s) 61, 115, 253, 507
BstMBI GATC 4 cut(s) 58, 112, 250, 504
BstMCI CGRYCG 2 cut(s) 115, 228
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 2 cut(s) 7, 279
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 5, 277
BstUI CGCG 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 58, 250
BstYI RGATCY 2 cut(s) 58, 250
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 3 cut(s) 85, 442, 655
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 134, 275, 376
CfoI GCGC 3 cut(s) 132, 376, 378
Cfr10I RCCGGY 1 cut(s) 424
CspCI CAANNNNNGTGG 1 cut(s) 641
CviAII CATG 2 cut(s) 274, 463
DdeI CTNAG 3 cut(s) 137, 360, 635
DpnI GATC 4 cut(s) 60, 114, 252, 506
DpnII GATC 4 cut(s) 58, 112, 250, 504
DraI TTTAAA 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 209, 489
EarI CTCTTC 2 cut(s) 209, 489
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 5, 277
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 277, 466
FaiI YATR 7 cut(s) 179, 275, 284, 294, 380, 416, 464
FatI CATG 2 cut(s) 273, 462
Fnu4HI GCNGC 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 1 cut(s) 197
GlaI GCGC 3 cut(s) 131, 375, 377
GluI GCNGC 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 288, 341, 425, 483
HhaI GCGC 3 cut(s) 132, 376, 378
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 2 cut(s) 277, 466
Hin6I GCGC 3 cut(s) 130, 374, 376
HinP1I GCGC 3 cut(s) 130, 374, 376
HinfI GANTC 3 cut(s) 141, 317, 337
HpaII CCGG 4 cut(s) 288, 341, 425, 483
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 6 cut(s) 40, 73, 140, 255, 361, 439
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 7 cut(s) 98, 113, 479, 482, 626, 650, 659
HpyAV CCTTC 4 cut(s) 24, 44, 238, 392
HpyCH4IV ACGT 5 cut(s) 84, 366, 441, 474, 654
HpyCH4V TGCA 3 cut(s) 153, 190, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 3 cut(s) 137, 360, 635
HpySE526I ACGT 5 cut(s) 84, 366, 441, 474, 654
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 2 cut(s) 277, 466
HspAI GCGC 3 cut(s) 130, 374, 376
Kzo9I GATC 4 cut(s) 58, 112, 250, 504
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 644
LpnPI CCDG 9 cut(s) 19, 79, 264, 291, 301, 354, 370, 438, 496
MaeI CTAG 1 cut(s) 197
MaeII ACGT 5 cut(s) 84, 366, 441, 474, 654
MalI GATC 4 cut(s) 60, 114, 252, 506
MboI GATC 4 cut(s) 58, 112, 250, 504
MboII GAAGA 5 cut(s) 86, 226, 407, 419, 506
MflI RGATCY 2 cut(s) 58, 250
MhlI GDGCHC 2 cut(s) 187, 221
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 9 cut(s) 27, 98, 116, 157, 202, 232, 367, 479, 638
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 303, 330, 453
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 2 cut(s) 302, 452
MspI CCGG 4 cut(s) 288, 341, 425, 483
MspR9I CCNGG 2 cut(s) 7, 279
MvaI CCWGG 2 cut(s) 7, 279
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeII GATC 4 cut(s) 58, 112, 250, 504
NlaIII CATG 2 cut(s) 277, 466
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PauI GCGCGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 627, 651
PfeI GAWTC 3 cut(s) 141, 317, 337
PflFI GACNNNGTC 1 cut(s) 476
PkrI GCNGC 1 cut(s) 613
Ple19I CGATCG 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 5, 277
PspGI CCWGG 2 cut(s) 5, 277
PsuI RGATCY 2 cut(s) 58, 250
PsyI GACNNNGTC 1 cut(s) 476
PteI GCGCGC 1 cut(s) 374
PvuI CGATCG 1 cut(s) 115
SacI GAGCTC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 303, 330, 453
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 4 cut(s) 58, 112, 250, 504
ScrFI CCNGG 2 cut(s) 7, 279
SduI GDGCHC 2 cut(s) 187, 221
SmlI CTYRAG 2 cut(s) 302, 452
SmoI CTYRAG 2 cut(s) 302, 452
SphI GCATGC 1 cut(s) 277
Sse9I AATT 1 cut(s) 191
SsiI CCGC 3 cut(s) 162, 609, 612
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 5, 277
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 5 cut(s) 87, 369, 444, 477, 657
TaqI TCGA 3 cut(s) 48, 96, 111
TaqII GACCGA 1 cut(s) 214
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 3 cut(s) 141, 317, 337
Tru1I TTAA 3 cut(s) 303, 330, 453
Tru9I TTAA 3 cut(s) 303, 330, 453
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 309, 403, 607
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 476
Vha464I CTTAAG 2 cut(s) 302, 452
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 196
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.