Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000148.1

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

125957 .. 129185

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaagatctcaaaatcccagatcttcatcttctcccagatcttcaaaaacttggtggccaccggcaaggtgtaccctcgactggagaatcaatcaaaacgatacactacagctcgagatatcccgatcgaaagattttggtttcggatcgaaaaccgaccgagctccgacgaacttgaaaccggccgcgccgccgtgcaaggctaccacagacgggtgcgcaaggacgaggcgaagccaatggaagaagtttggagtgatttggtagccggacggtggagaacttggccggcgaaggaattgcagcgtctccgtcgagctcggggggggggggggagagagagagcgctcccggtttccgaaaatggaaggccgatgcaccgccgcactgacgactcttttcaggaaacgaatgtttgcaacggcctcctcggcgacttcgctgccatcatctcctgctgctccgtcgtcgagccttgcgtcgccatcatctgcagcttcgtcgccgtcatcgtcttagtctcctgcaacaaattcgccgagaaggtcaagtacgacgaccccttggaggcggctcagaaattgggcttgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

9.56

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	129 - 192	9.1e-10	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AccII	CGCG	1 cut(s)	189
AciI	CCGC	5 cut(s)	187, 192, 382, 385, 572
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	3 cut(s)	57, 184, 287
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	2 cut(s)	74, 554
AfeI	AGCGCT	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	82, 214, 276, 568
AgsI	TTSAA	2 cut(s)	46, 179
AluBI	AGCT	4 cut(s)	113, 165, 320, 498
AluI	AGCT	4 cut(s)	113, 165, 320, 498
Alw21I	GWGCWC	2 cut(s)	167, 322
Alw26I	GTCTC	2 cut(s)	314, 526
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	2 cut(s)	114, 321
Aor51HI	AGCGCT	1 cut(s)	348
AoxI	GGCC	5 cut(s)	57, 184, 287, 371, 424
ApeKI	GCWGC	4 cut(s)	304, 443, 459, 495
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	191, 222, 349
AsuC2I	CCSGG	1 cut(s)	353
AvaI	CYCGRG	2 cut(s)	114, 321
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	167, 322
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
Bbv12I	GWGCWC	2 cut(s)	167, 322
BbvI	GCAGC	4 cut(s)	316, 430, 446, 507
BccI	CCATC	2 cut(s)	455, 494
BceAI	ACGGC	3 cut(s)	179, 439, 491
BcgI	CGANNNNNNTGC	8 cut(s)	283, 317, 425, 459, 484, 517, 518, 551
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	314, 526
BfmI	CTRYAG	2 cut(s)	108, 493
BfoI	RGCGCY	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	432
BglII	AGATCT	3 cut(s)	6, 21, 39
BisI	GCNGC	8 cut(s)	187, 192, 305, 385, 444, 460, 496, 573
BlsI	GCNGC	8 cut(s)	188, 193, 306, 386, 445, 461, 497, 574
Bme1390I	CCNGG	1 cut(s)	353
BmeT110I	CYCGRG	2 cut(s)	114, 321
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	430, 564
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 214, 276, 568
Bse118I	RCCGGY	3 cut(s)	62, 182, 289
Bse1I	ACTGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	430, 564
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	4 cut(s)	82, 214, 276, 568
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	419
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	316, 430, 446, 507
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	3 cut(s)	129, 161, 187
BshFI	GGCC	5 cut(s)	59, 186, 289, 373, 426
BsiEI	CGRYCG	3 cut(s)	129, 161, 187
BsiHKAI	GWGCWC	2 cut(s)	167, 322
BsiHKCI	CYCGRG	2 cut(s)	114, 321
BsiSI	CCGG	5 cut(s)	63, 183, 270, 290, 353
BslI	CCNNNNNNNGG	4 cut(s)	82, 214, 276, 568
BsmAI	GTCTC	2 cut(s)	314, 526
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	5 cut(s)	59, 186, 289, 373, 426
BsoBI	CYCGRG	2 cut(s)	114, 321
Bsp1286I	GDGCHC	2 cut(s)	167, 322
Bsp143I	GATC	5 cut(s)	6, 21, 39, 126, 147
BspACI	CCGC	5 cut(s)	187, 192, 382, 385, 572
BspANI	GGCC	5 cut(s)	59, 186, 289, 373, 426
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	497
BspPI	GGATC	1 cut(s)	155
BsrFI	RCCGGY	3 cut(s)	62, 182, 289
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	3 cut(s)	62, 182, 289
BssECI	CCNNGG	2 cut(s)	430, 564
BssMI	GATC	5 cut(s)	6, 21, 39, 126, 147
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	517, 576
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	3 cut(s)	191, 222, 349
BstKTI	GATC	5 cut(s)	9, 24, 42, 129, 150
BstMAI	GTCTC	2 cut(s)	314, 526
BstMBI	GATC	5 cut(s)	6, 21, 39, 126, 147
BstMCI	CGRYCG	3 cut(s)	129, 161, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	108, 493
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	316, 430, 446, 507
BstX2I	RGATCY	3 cut(s)	6, 21, 39
BstYI	RGATCY	3 cut(s)	6, 21, 39
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	59, 186, 289, 373, 426
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	3 cut(s)	191, 222, 349
Cfr10I	RCCGGY	3 cut(s)	62, 182, 289
CseI	GACGC	2 cut(s)	296, 469
Csp6I	GTAC	2 cut(s)	73, 553
CviQI	GTAC	2 cut(s)	73, 553
DdeI	CTNAG	2 cut(s)	517, 576
DpnI	GATC	5 cut(s)	8, 23, 41, 128, 149
DpnII	GATC	5 cut(s)	6, 21, 39, 126, 147
EaeI	YGGCCR	3 cut(s)	57, 184, 287
EagI	CGGCCG	1 cut(s)	184
Ecl136II	GAGCTC	2 cut(s)	165, 320
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	2 cut(s)	167, 322
Eco32I	GATATC	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	2 cut(s)	165, 320
Eco88I	CYCGRG	2 cut(s)	114, 321
EcoICRI	GAGCTC	2 cut(s)	165, 320
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	2 cut(s)	167, 322
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	314
Fnu4HI	GCNGC	8 cut(s)	187, 192, 305, 385, 444, 460, 496, 573
FriOI	GRGCYC	2 cut(s)	167, 322
Fsp4HI	GCNGC	8 cut(s)	187, 192, 305, 385, 444, 460, 496, 573
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	3 cut(s)	190, 221, 348
GluI	GCNGC	8 cut(s)	187, 192, 305, 385, 444, 460, 496, 573
GsuI	CTGGAG	1 cut(s)	104
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	59, 186, 289, 373, 426
HapII	CCGG	5 cut(s)	63, 183, 270, 290, 353
HgaI	GACGC	2 cut(s)	296, 469
HhaI	GCGC	3 cut(s)	191, 222, 349
Hin6I	GCGC	3 cut(s)	189, 220, 347
HinP1I	GCGC	3 cut(s)	189, 220, 347
HinfI	GANTC	2 cut(s)	88, 395
HpaII	CCGG	5 cut(s)	63, 183, 270, 290, 353
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	147, 169, 361, 579
Hpy188III	TCNNGA	3 cut(s)	116, 124, 404
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	7 cut(s)	173, 318, 470, 473, 485, 506, 560
HpyAV	CCTTC	3 cut(s)	289, 363, 538
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	6 cut(s)	199, 304, 379, 420, 495, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	517, 576
HspAI	GCGC	3 cut(s)	189, 220, 347
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	5 cut(s)	6, 21, 39, 126, 147
LmnI	GCTCC	3 cut(s)	170, 354, 467
Lsp1109I	GCAGC	4 cut(s)	316, 430, 446, 507
LweI	GCATC	1 cut(s)	366
MalI	GATC	5 cut(s)	8, 23, 41, 128, 149
MboI	GATC	5 cut(s)	6, 21, 39, 126, 147
MboII	GAAGA	5 cut(s)	16, 16, 22, 34, 257
MflI	RGATCY	3 cut(s)	6, 21, 39
MhlI	GDGCHC	2 cut(s)	167, 322
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	3 cut(s)	299, 533, 581
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	87, 223, 437, 440, 562
Mox20I	TGGCCA	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	5 cut(s)	63, 183, 270, 290, 353
MspR9I	CCNGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	432
NaeI	GCCGGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	5 cut(s)	6, 21, 39, 126, 147
NgoMIV	GCCGGC	1 cut(s)	289
NmeAIII	GCCGAG	2 cut(s)	411, 565
NsbI	TGCGCA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	2 cut(s)	477, 510
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	8 cut(s)	188, 193, 306, 386, 445, 461, 497, 574
Ple19I	CGATCG	1 cut(s)	129
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp124BI	GAGCTC	2 cut(s)	167, 322
PstI	CTGCAG	1 cut(s)	497
PsuI	RGATCY	3 cut(s)	6, 21, 39
PvuI	CGATCG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	74, 554
RsaNI	GTAC	2 cut(s)	73, 553
SacI	GAGCTC	2 cut(s)	167, 322
SatI	GCNGC	8 cut(s)	187, 192, 305, 385, 444, 460, 496, 573
Sau3AI	GATC	5 cut(s)	6, 21, 39, 126, 147
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	167, 322
SetI	ASST	6 cut(s)	72, 115, 167, 322, 500, 549
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	108, 493
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	114, 589
SmoI	CTYRAG	2 cut(s)	114, 589
Sse9I	AATT	3 cut(s)	299, 533, 581
SsiI	CCGC	5 cut(s)	187, 192, 382, 385, 572
SstI	GAGCTC	2 cut(s)	167, 322
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	6 cut(s)	79, 115, 129, 150, 316, 471
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	299, 533, 581
TauI	GCSGC	4 cut(s)	189, 194, 387, 575
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	4 cut(s)	304, 443, 459, 495
TspDTI	ATGAA	2 cut(s)	16, 17
TspGWI	ACGGA	2 cut(s)	302, 454
TspRI	CASTG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.