Rmu_sc0000164.1_g000004

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000164.1
OG0006056
Physical Location & Seq
Reverse (-)
24131 .. 27055
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
atgacagaaatagtagaagaaacactgtgtgagctgaggcaaaccttccagagtggtaaaaccaaaagtgttgcatggaggaaaacccaactcaatgctcttcgtcatctcgtcaaagataatgaggaaaaggtctttgaagcactctatcaagatcttggcaagcacccgattgaatcttacagggatgagattggagttgtggtgaaaacaatcaatcatactttgagcaatttagacaaatgggtggcacctacaaagggtaaattaccgttgcttgtttttccgagaaggggagaggtgctgccggaaccactcggcgtagttctcatctttgcatcttggaacttcccaatatctttggctttggatcctgtaataggagcaatagctgcagggaatgcagtggttctaaaaccttcagaccaagcgccggcatgctcttctttaattgctaaaaccatacctgaatacatggaccctaaagccgtaagaatcatcgagggtggaccacaaatttgtgaaaaactcctgcagcataagtgggataagatattctttactgctgccaagcatttaacacctgttacactagagctgggtggaaaatgccctgtcatccttgattcactctccaatccttcggatttaaaggtggcgatcaaaagaattgtaagtggaaagtgggggccttgcagtgggcaggcatgtataggaatagattatatgctcgttgaggaaaagcttgctcctactgtgatcgaattgttaaagaaaacgatgaagagattttatactgaaagcccaaaagatgcaaattgcatggccagaattgtaaataagcaccactttcagagagtgcagaatctcctcaaagaccctcttgttgaagcttccattgtacatggtggttcactggatgaagaaaacctgttcatcgagccaataatcttgttagatccaccacttgatgctgcaatcatgaatgaagaaatctttggcccactactcccagtaatcactttgaagaacattcaagaaagcattgaattcataaatgaaaggccaaaacctctaaccatttacgccttcaccaaagatgaaaactttaagaagaaaattttatcagaaacatcctcagggagcgtgactttcaatgacgtcttgattcaatttctctgtgatgctctaccctttggtggtgttggttccagtggatttgggaggtaccatgggaagttttcttttgatactttcagccatgagaaagcagttctgcgaacaggcttcttccctgaacttgaggctagatatcctccttggaataacttcaaaatgacatttatcaaacttgcctatgaccttgactactttggactatttctgctccttgttggacttaaaaggtattag

Protein Analysis

470

Amino Acids

52.69

Weight (kDa)

7.13

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 5 - 425 5.7e-70 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1164
Acc65I GGTACC 1 cut(s) 1227
AccB1I GGYRCC 2 cut(s) 250, 1227
AclWI GGATC 3 cut(s) 365, 378, 953
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 3 cut(s) 516, 1049, 1119
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 1161
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 2 cut(s) 903, 1229
AfiI CCNNNNNNNGG 6 cut(s) 260, 293, 380, 433, 698, 1199
AgsI TTSAA 9 cut(s) 140, 176, 890, 1027, 1037, 1049, 1156, 1172, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 5 cut(s) 34, 392, 598, 745, 893
AluI AGCT 5 cut(s) 34, 392, 598, 745, 893
AlwI GGATC 3 cut(s) 365, 378, 953
AoxI GGCC 4 cut(s) 689, 825, 1000, 1064
ApeKI GCWGC 5 cut(s) 304, 392, 535, 566, 974
ApoI RAATTY 3 cut(s) 516, 1049, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 501, 533
Asp700I GAANNNNTTC 1 cut(s) 1328
Asp718I GGTACC 1 cut(s) 1227
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 478, 509, 689, 1001
AsuHPI GGTGA 2 cut(s) 217, 1084
AvaII GGWCC 2 cut(s) 478, 509
AxyI CCTNAGG 1 cut(s) 1138
BalI TGGCCA 1 cut(s) 827
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 2 cut(s) 250, 1227
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 5 cut(s) 291, 379, 547, 553, 961
BceAI ACGGC 1 cut(s) 473
BfaI CTAG 2 cut(s) 593, 1308
BfmI CTRYAG 2 cut(s) 393, 533
BfoI RGCGCY 1 cut(s) 434
BglII AGATCT 1 cut(s) 154
BisI GCNGC 5 cut(s) 305, 393, 536, 567, 975
BlsI GCNGC 5 cut(s) 306, 394, 537, 568, 976
Bme18I GGWCC 2 cut(s) 478, 509
BmgT120I GGNCC 4 cut(s) 478, 509, 689, 1001
BmiI GGNNCC 7 cut(s) 252, 312, 372, 480, 690, 1210, 1229
BmrI ACTGGG 1 cut(s) 1007
BmsI GCATC 4 cut(s) 347, 802, 961, 1174
BmuI ACTGGG 1 cut(s) 1007
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 1322
BsaHI GRCGYC 1 cut(s) 1161
BsaJI CCNNGG 2 cut(s) 1231, 1319
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 6 cut(s) 260, 293, 380, 433, 698, 1199
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 3 cut(s) 921, 1013, 1212
Bse21I CCTNAGG 1 cut(s) 1138
BseDI CCNNGG 2 cut(s) 1231, 1319
BseGI GGATG 4 cut(s) 193, 618, 925, 1133
BseLI CCNNNNNNNGG 6 cut(s) 260, 293, 380, 433, 698, 1199
BseMII CTCAG 2 cut(s) 26, 1152
BseNI ACTGG 3 cut(s) 921, 1013, 1212
BseRI GAGGAG 1 cut(s) 860
BseXI GCAGC 5 cut(s) 291, 379, 547, 553, 961
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 881
BshFI GGCC 4 cut(s) 691, 827, 1002, 1066
BshNI GGYRCC 2 cut(s) 250, 1227
BsiSI CCGG 2 cut(s) 308, 434
BslI CCNNNNNNNGG 6 cut(s) 260, 293, 380, 433, 698, 1199
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 4 cut(s) 691, 827, 1002, 1066
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 5 cut(s) 154, 370, 660, 759, 958
Bsp19I CCATGG 1 cut(s) 1231
BspANI GGCC 4 cut(s) 691, 827, 1002, 1066
BspCNI CTCAG 2 cut(s) 27, 1151
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 7 cut(s) 252, 312, 372, 480, 690, 1210, 1229
BspMAI CTGCAG 2 cut(s) 397, 537
BspPI GGATC 3 cut(s) 365, 378, 953
BspQI GCTCTTC 2 cut(s) 105, 448
BspT107I GGYRCC 2 cut(s) 250, 1227
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 3 cut(s) 921, 1013, 1212
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 1231, 1319
BssMI GATC 5 cut(s) 154, 370, 660, 759, 958
BssNI GRCGYC 1 cut(s) 1161
BssT1I CCWWGG 2 cut(s) 1231, 1319
Bst4CI ACNGT 3 cut(s) 27, 273, 757
Bst6I CTCTTC 3 cut(s) 105, 448, 779
BstACI GRCGYC 1 cut(s) 1161
BstAPI GCANNNNNTGC 2 cut(s) 392, 401
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 5 cut(s) 164, 435, 439, 705, 747
BstDEI CTNAG 2 cut(s) 35, 1138
BstDSI CCRYGG 1 cut(s) 1231
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 4 cut(s) 193, 618, 925, 1133
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 5 cut(s) 157, 373, 663, 762, 961
BstMBI GATC 5 cut(s) 154, 370, 660, 759, 958
BstMWI GCNNNNNNNGC 2 cut(s) 392, 401
BstNSI RCATGY 2 cut(s) 441, 711
BstSFI CTRYAG 2 cut(s) 393, 533
BstV1I GCAGC 5 cut(s) 291, 379, 547, 553, 961
BstX2I RGATCY 3 cut(s) 154, 370, 958
BstYI RGATCY 3 cut(s) 154, 370, 958
Bsu36I CCTNAGG 1 cut(s) 1138
BsuRI GGCC 4 cut(s) 691, 827, 1002, 1066
BtgI CCRYGG 1 cut(s) 1231
BtsCI GGATG 4 cut(s) 193, 618, 925, 1133
BtsI GCAGTG 2 cut(s) 411, 703
BtsIMutI CAGTG 5 cut(s) 23, 411, 703, 914, 1219
Cac8I GCNNGC 5 cut(s) 164, 435, 439, 705, 747
CciI TCATGA 1 cut(s) 981
CfoI GCGC 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 4 cut(s) 478, 509, 689, 1001
Csp6I GTAC 2 cut(s) 902, 1228
CviAII CATG 9 cut(s) 75, 438, 475, 708, 823, 905, 982, 1232, 1262
CviQI GTAC 2 cut(s) 902, 1228
DdeI CTNAG 2 cut(s) 35, 1138
DpnI GATC 5 cut(s) 156, 372, 662, 761, 960
DpnII GATC 5 cut(s) 154, 370, 660, 759, 958
DraI TTTAAA 1 cut(s) 651
DraIII CACNNNGTG 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 3 cut(s) 105, 448, 779
EarI CTCTTC 3 cut(s) 105, 448, 779
Eco130I CCWWGG 2 cut(s) 1231, 1319
Eco32I GATATC 1 cut(s) 1313
Eco47I GGWCC 2 cut(s) 478, 509
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 1138
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 1049
EcoRV GATATC 1 cut(s) 1313
EcoT14I CCWWGG 2 cut(s) 1231, 1319
ErhI CCWWGG 2 cut(s) 1231, 1319
FaeI CATG 9 cut(s) 78, 441, 478, 711, 826, 908, 985, 1235, 1265
FalI AAGNNNNNCTT 6 cut(s) 542, 574, 833, 865, 867, 899
FatI CATG 9 cut(s) 74, 437, 474, 707, 822, 904, 981, 1231, 1261
Fnu4HI GCNGC 5 cut(s) 305, 393, 536, 567, 975
FokI GGATG 4 cut(s) 200, 605, 932, 1120
Fsp4HI GCNGC 5 cut(s) 305, 393, 536, 567, 975
FspBI CTAG 2 cut(s) 593, 1308
GlaI GCGC 1 cut(s) 432
GluI GCNGC 5 cut(s) 305, 393, 536, 567, 975
GsaI CCCAGC 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 4 cut(s) 691, 827, 1002, 1066
HapII CCGG 2 cut(s) 308, 434
HhaI GCGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 1161
Hin1II CATG 9 cut(s) 78, 441, 478, 711, 826, 908, 985, 1235, 1265
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 2 cut(s) 743, 891
HinfI GANTC 5 cut(s) 176, 495, 626, 865, 1168
HpaII CCGG 2 cut(s) 308, 434
HphI GGTGA 2 cut(s) 217, 1084
Hpy166II GTNNAC 2 cut(s) 509, 914
Hpy188I TCNGA 5 cut(s) 288, 424, 646, 855, 1129
Hpy188III TCNNGA 5 cut(s) 49, 152, 982, 1037, 1165
Hpy8I GTNNAC 2 cut(s) 509, 914
HpyAV CCTTC 5 cut(s) 55, 285, 429, 651, 1099
HpyCH4III ACNGT 3 cut(s) 27, 273, 757
HpyCH4IV ACGT 1 cut(s) 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 401
HpyF3I CTNAG 2 cut(s) 35, 1138
HpySE526I ACGT 1 cut(s) 1161
Hsp92I GRCGYC 1 cut(s) 1161
Hsp92II CATG 9 cut(s) 78, 441, 478, 711, 826, 908, 985, 1235, 1265
HspAI GCGC 1 cut(s) 431
KpnI GGTACC 1 cut(s) 1231
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Kzo9I GATC 5 cut(s) 154, 370, 660, 759, 958
LguI GCTCTTC 2 cut(s) 105, 448
LmnI GCTCC 4 cut(s) 383, 754, 1143, 1392
Lsp1109I GCAGC 5 cut(s) 291, 379, 547, 553, 961
LweI GCATC 4 cut(s) 347, 802, 961, 1174
MaeI CTAG 2 cut(s) 593, 1308
MaeII ACGT 1 cut(s) 1161
MaeIII GTNAC 2 cut(s) 586, 1147
MalI GATC 5 cut(s) 156, 372, 662, 761, 960
MboI GATC 5 cut(s) 154, 370, 660, 759, 958
MboII GAAGA 9 cut(s) 29, 92, 435, 796, 935, 1001, 1039, 1126, 1282
MflI RGATCY 3 cut(s) 154, 370, 958
MlsI TGGCCA 1 cut(s) 827
MluNI TGGCCA 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 1375
Mox20I TGGCCA 1 cut(s) 827
MroNI GCCGGC 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 1328
MscI TGGCCA 1 cut(s) 827
MseI TTAA 6 cut(s) 449, 578, 650, 770, 1110, 1401
Msp20I TGGCCA 1 cut(s) 827
MspI CCGG 2 cut(s) 308, 434
Mva1269I GAATGC 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 392, 401
NaeI GCCGGC 1 cut(s) 435
NcoI CCATGG 1 cut(s) 1231
NdeII GATC 5 cut(s) 154, 370, 660, 759, 958
NgoMIV GCCGGC 1 cut(s) 433
NlaIII CATG 9 cut(s) 78, 441, 478, 711, 826, 908, 985, 1235, 1265
NlaIV GGNNCC 7 cut(s) 252, 312, 372, 480, 690, 1210, 1229
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 1147
NspI RCATGY 2 cut(s) 441, 711
PaeI GCATGC 1 cut(s) 441
PagI TCATGA 1 cut(s) 981
PciSI GCTCTTC 2 cut(s) 105, 448
PctI GAATGC 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 1328
PfeI GAWTC 5 cut(s) 176, 495, 626, 865, 1168
PkrI GCNGC 5 cut(s) 306, 394, 537, 568, 976
PspFI CCCAGC 1 cut(s) 598
PspN4I GGNNCC 7 cut(s) 252, 312, 372, 480, 690, 1210, 1229
PspPI GGNCC 4 cut(s) 478, 509, 689, 1001
PstI CTGCAG 2 cut(s) 397, 537
PsuI RGATCY 3 cut(s) 154, 370, 958
RsaI GTAC 2 cut(s) 903, 1229
RsaNI GTAC 2 cut(s) 902, 1228
SapI GCTCTTC 2 cut(s) 105, 448
SaqAI TTAA 6 cut(s) 449, 578, 650, 770, 1110, 1401
SatI GCNGC 5 cut(s) 305, 393, 536, 567, 975
Sau3AI GATC 5 cut(s) 154, 370, 660, 759, 958
Sau96I GGNCC 4 cut(s) 478, 509, 689, 1001
SfaNI GCATC 4 cut(s) 347, 802, 961, 1174
SfcI CTRYAG 2 cut(s) 393, 533
SinI GGWCC 2 cut(s) 478, 509
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
SphI GCATGC 1 cut(s) 441
SspMI CTAG 2 cut(s) 593, 1308
StyI CCWWGG 2 cut(s) 1231, 1319
TaaI ACNGT 3 cut(s) 27, 273, 757
TaiI ACGT 1 cut(s) 1164
TaqI TCGA 3 cut(s) 501, 762, 939
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 5 cut(s) 176, 495, 626, 865, 1168
Tru1I TTAA 6 cut(s) 449, 578, 650, 770, 1110, 1401
Tru9I TTAA 6 cut(s) 449, 578, 650, 770, 1110, 1401
TscAI CASTG 5 cut(s) 30, 411, 703, 921, 1219
TseFI GTSAC 1 cut(s) 1147
TseI GCWGC 5 cut(s) 304, 392, 535, 566, 974
Tsp45I GTSAC 1 cut(s) 1147
TspDTI ATGAA 8 cut(s) 797, 925, 936, 998, 1002, 1042, 1074, 1116
TspRI CASTG 5 cut(s) 30, 411, 703, 921, 1219
VpaK11BI GGWCC 2 cut(s) 478, 509
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 3 cut(s) 516, 1049, 1119
XceI RCATGY 2 cut(s) 441, 711
XmnI GAANNNNTTC 1 cut(s) 1328
XspI CTAG 2 cut(s) 593, 1308
ZraI GACGTC 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.