Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Forward (+)

169670 .. 170705

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaaagaaatgagtgcttcacaaaggaaaacaaagtttgttccacgtgtttgtatgttcggaggaaaagcatttgcaacgtatgtacaagccaaaagaattgtgaagtttatcacagatgtcgcggagactgtaaatcatgatcctagtataggtgatctactgaaggttatcttcgtacctgattataatgtaagtgttgctgaattattaattcctgcgagtgagctctcacagcacatcagtactgctggcatggaggccagtggcaccagcaacatgaagtttgcaatgaatggctgcatcctaattgggactctggatggagccaatgttgaaataagagaggaggttggagcagatatctttttcctctttggtgctgaagctcatgagattgctgggctgagaaaagaacgagctgaagggaagtttgttccagacccccgttttgaagaagtcaaggaatttgtcagaagtggcgtttttgggtcgtacaattatgatgacctgatcggatccagaacaaggtttgttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

180

Amino Acids

19.85

Weight (kDa)

5.68

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	8 - 167	1.1e-63	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	3 cut(s)	137, 513, 526
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	3 cut(s)	185, 405, 444
AcvI	CACGTG	1 cut(s)	47
AfaI	GTAC	4 cut(s)	87, 180, 247, 497
AfiI	CCNNNNNNNGG	2 cut(s)	152, 528
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	338, 455
AluBI	AGCT	3 cut(s)	229, 389, 422
AluI	AGCT	3 cut(s)	229, 389, 422
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	137, 513, 526
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	271, 328, 520
BmsI	GCATC	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 528
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	303, 328
BseLI	CCNNNNNNNGG	2 cut(s)	152, 528
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	152, 528
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	142, 157, 513, 518
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	2 cut(s)	139, 391
BspLI	GGNNCC	3 cut(s)	271, 328, 520
BspPI	GGATC	3 cut(s)	137, 513, 526
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	142, 157, 513, 518
Bst4CI	ACNGT	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	303, 328
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	145, 160, 516, 521
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	4 cut(s)	142, 157, 513, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	303, 328
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	2 cut(s)	139, 391
Csp6I	GTAC	4 cut(s)	86, 179, 246, 496
CviAII	CATG	4 cut(s)	140, 256, 280, 392
CviJI	RGCY	8 cut(s)	92, 229, 263, 300, 329, 389, 406, 422
CviKI_1	RGCY	8 cut(s)	92, 229, 263, 300, 329, 389, 406, 422
CviQI	GTAC	4 cut(s)	86, 179, 246, 496
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	4 cut(s)	144, 159, 515, 520
DpnII	GATC	4 cut(s)	142, 157, 513, 518
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	3 cut(s)	185, 405, 444
Eco72I	CACGTG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	4 cut(s)	143, 259, 283, 395
FaiI	YATR	9 cut(s)	56, 84, 141, 152, 189, 257, 281, 393, 504
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	4 cut(s)	139, 255, 279, 391
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	290, 335
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	301
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	143, 259, 283, 395
HinfI	GANTC	1 cut(s)	316
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	62, 476, 518
Hpy188III	TCNNGA	5 cut(s)	140, 320, 392, 440, 522
HpyAV	CCTTC	2 cut(s)	160, 419
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	46, 80
HpyCH4V	TGCA	3 cut(s)	77, 290, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	2 cut(s)	46, 80
Hsp92II	CATG	4 cut(s)	143, 259, 283, 395
Kzo9I	GATC	4 cut(s)	142, 157, 513, 518
LmnI	GCTCC	2 cut(s)	326, 356
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	46, 80
MalI	GATC	4 cut(s)	144, 159, 515, 520
MboI	GATC	4 cut(s)	142, 157, 513, 518
MboII	GAAGA	2 cut(s)	166, 467
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	99, 206, 213, 309, 467, 499
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	5 cut(s)	56, 253, 340, 343, 383
MseI	TTAA	1 cut(s)	212
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	4 cut(s)	142, 157, 513, 518
NlaIII	CATG	4 cut(s)	143, 259, 283, 395
NlaIV	GGNNCC	3 cut(s)	271, 328, 520
PagI	TCATGA	2 cut(s)	139, 391
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	271, 328, 520
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	4 cut(s)	87, 180, 247, 497
RsaNI	GTAC	4 cut(s)	86, 179, 246, 496
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	4 cut(s)	142, 157, 513, 518
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	312
Sse9I	AATT	6 cut(s)	99, 206, 213, 309, 467, 499
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	49, 83
TasI	AATT	6 cut(s)	99, 206, 213, 309, 467, 499
TatI	WGTACW	2 cut(s)	85, 245
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	3 cut(s)	17, 296, 308
TspRI	CASTG	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	150
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.