Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000305.1

Orthogroup ID

OG0003186

Physical Location & Seq

Genomic Coordinates Reverse (-)

6230 .. 6931

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000305.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaggcgagatgtttggcatgcgtttattagtgagattattgtgttacacaagtttatcggggagtatggtccaaaggaagatgatgaatcgttatttcatgtttatggtgctcacaaaggaaaggaaagagctatcaccagtgtcattaatagtatagctagactacaggctcttcagtttatgaggaagttgctagatgatccgactaaaatagttcagttcacatatctacaatatgcaccatatggtgatattgtttcgcaggctctagcagtaaactattggggtggaccactgatatctaagtttatagaggaacacaacccaccagctcaaggagcaaggccttctagtgaaatgattgaaagcagtaaacatgtgtttgacattgatggcagtgtctacttacacaagtggaagacctctccatcttgggcttcaagtgcttctgtgagcttttggaagaatgcatcaataagtcagggggtggtgttaagtaaaaatattgttgttgctgattcagctctagtggaaagagccgcaggaacatgcaaacgaaaatcgcaggcagctgaaaaaactcaagccactattgatactgcaatgcttaaagggatacccagtaacatcgatctattcaagattggctctgaggtttgttctccacacaataagcatcatttggtccgaagtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

8.95

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71240 AT1G71240 AT1G71240
fragaria_vesca	FvH4_5g29650 FvH4_5g29650 FvH4_5g29650 FvH4_5g29650 FvH4_5g29650 FvH4_5g29650 FvH4_5g29650
malus_domestica	MD08G1227800.v1.1 MD15G1421600.v1.1
prunus_persica	Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1 Prupe.1G566800_v2.0.a1
pyrus_communis	pycom08g19860 pycom15g37380
rosa_chinensis	RchiOBHm_Chr7g0222711
rosa_laevigata	RLG00000002029
rosa_multiflora	Rmu_sc0000305.1_g000002 Rmu_sc0007870.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236530
rosa_rugosa	Rorug07G0212000 Rorug07G0212100
rosa_samantha	Rh7AG356200 Rh7BG344600 Rh7CG373700 Rh7DG350500
rosa_wichuraiana	Rw7G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	368, 444, 643
AluBI	AGCT	6 cut(s)	134, 161, 335, 459, 527, 575
AluI	AGCT	6 cut(s)	134, 161, 335, 459, 527, 575
Alw21I	GWGCWC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	3 cut(s)	71, 293, 688
AsuHPI	GGTGA	2 cut(s)	130, 263
AvaII	GGWCC	3 cut(s)	71, 293, 688
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	2 cut(s)	389, 439
BciVI	GTATCC	1 cut(s)	612
BfaI	CTAG	5 cut(s)	162, 197, 272, 354, 530
BfmI	CTRYAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	2 cut(s)	543, 573
BlsI	GCNGC	2 cut(s)	544, 574
BmcAI	AGTACT	1 cut(s)	697
Bme18I	GGWCC	3 cut(s)	71, 293, 688
BmgT120I	GGNCC	3 cut(s)	71, 293, 688
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	482, 688
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	321, 570
Bsa29I	ATCGAT	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	141, 624
Bse3DI	GCAATG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	633
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	2 cut(s)	141, 624
BseXI	GCAGC	1 cut(s)	584
BshFI	GGCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	202, 634
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	646
BspDI	ATCGAT	1 cut(s)	633
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	141, 624
BssMI	GATC	2 cut(s)	202, 634
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	21, 267, 570
BstDEI	CTNAG	2 cut(s)	306, 654
BstKTI	GATC	2 cut(s)	205, 637
BstMBI	GATC	2 cut(s)	202, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 446, 524
BstNSI	RCATGY	3 cut(s)	23, 383, 555
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	584
BstV2I	GAAGAC	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	349
BsuTUI	ATCGAT	1 cut(s)	633
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	3 cut(s)	148, 296, 406
Cac8I	GCNNGC	3 cut(s)	21, 267, 570
Cfr13I	GGNCC	3 cut(s)	71, 293, 688
ClaI	ATCGAT	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	4 cut(s)	20, 101, 380, 552
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	2 cut(s)	306, 654
DpnI	GATC	2 cut(s)	204, 636
DpnII	GATC	2 cut(s)	202, 634
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	71, 293, 688
Eco57I	CTGAAG	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	475
FaeI	CATG	4 cut(s)	23, 104, 383, 555
FatI	CATG	4 cut(s)	19, 100, 379, 551
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	543, 573
Fsp4HI	GCNGC	2 cut(s)	543, 573
FspBI	CTAG	5 cut(s)	162, 197, 272, 354, 530
GluI	GCNGC	2 cut(s)	543, 573
HaeIII	GGCC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	23, 104, 383, 555
HinfI	GANTC	2 cut(s)	89, 521
HphI	GGTGA	2 cut(s)	130, 263
Hpy166II	GTNNAC	5 cut(s)	225, 280, 293, 377, 406
Hpy188I	TCNGA	3 cut(s)	207, 655, 692
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	5 cut(s)	225, 280, 293, 377, 406
HpyAV	CCTTC	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	242, 473, 555, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 446, 524
HpyF3I	CTNAG	2 cut(s)	306, 654
Hsp92II	CATG	4 cut(s)	23, 104, 383, 555
Kzo9I	GATC	2 cut(s)	202, 634
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	8 cut(s)	154, 155, 251, 345, 470, 531, 554, 637
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	482, 688
MaeI	CTAG	5 cut(s)	162, 197, 272, 354, 530
MaeIII	GTNAC	2 cut(s)	45, 626
MalI	GATC	2 cut(s)	204, 636
MboI	GATC	2 cut(s)	202, 634
MboII	GAAGA	4 cut(s)	92, 167, 433, 478
MhlI	GDGCHC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	180, 310, 436, 649
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	3 cut(s)	150, 497, 612
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	341, 446, 524
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	202, 634
NlaIII	CATG	4 cut(s)	23, 104, 383, 555
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	3 cut(s)	23, 383, 555
PaeI	GCATGC	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	349
PciI	ACATGT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	89, 521
PkrI	GCNGC	2 cut(s)	544, 574
PscI	ACATGT	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	71, 293, 688
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	150, 497, 612
SatI	GCNGC	2 cut(s)	543, 573
Sau3AI	GATC	2 cut(s)	202, 634
Sau96I	GGNCC	3 cut(s)	71, 293, 688
ScaI	AGTACT	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	8 cut(s)	136, 163, 337, 428, 461, 529, 577, 660
SfaNI	GCATC	2 cut(s)	482, 688
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	3 cut(s)	71, 293, 688
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	336, 585
SmoI	CTYRAG	2 cut(s)	336, 585
SphI	GCATGC	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	543
SspI	AATATT	1 cut(s)	508
SspMI	CTAG	5 cut(s)	162, 197, 272, 354, 530
StuI	AGGCCT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	633
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	89, 521
Tru1I	TTAA	3 cut(s)	150, 497, 612
Tru9I	TTAA	3 cut(s)	150, 497, 612
TscAI	CASTG	3 cut(s)	148, 303, 406
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	89, 102
TspRI	CASTG	3 cut(s)	148, 303, 406
VpaK11BI	GGWCC	3 cut(s)	71, 293, 688
VspI	ATTAAT	1 cut(s)	150
XceI	RCATGY	3 cut(s)	23, 383, 555
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	5 cut(s)	162, 197, 272, 354, 530
ZrmI	AGTACT	1 cut(s)	697
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.