Rh7BG344600

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003186
Physical Location & Seq
Reverse (-)
35964205 .. 35975003
10799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG344600.1

Sequence Viewer

Length: 1752 bp
ATGATAGATGCGGTGCAAGAAAAGTTGAATTCATGGCTACTGAAGACCCAAAGCTTTTTAAATGAAGTTACTTCTCCACTAGTAAGAACTAGTCAGACTGGAAAACCTGTCACCAGAGATGCTTTTGAGACACAAGATATGGATGACATATTTATGGCTGAACAAACTATTAATAGCAGAACACCAAATGGAATTCTCTCTTTGGCTGCTATTGTATCTGTAGAGCAGTTTAGCAGGATGAATGGATTGACGGGGCGGAAAATGCAGAAAATATTCAAAGCGCTTGTTCCTGAATCTACATATAATGATGCTCGTAATTTGGTTGAATATTGCTGCTTTAGGTTTTTGTCAAGGGATGCTTCTGATATTCATCCTTCCCTGAAGGAACCTGCATTCCAAAGACTGATATTCATAACAATGCTTGCATGGGAGAATCCTTATCAAGAACATCTTGCCAGTGGTTCGGAGAAAGCTACTTTTCAGAGAAAACTTGTCAGGGAAGAGGCTTTTGTACGTTTGGCTCCTGCAATTTCTGGTGTGGCTGATAGGTCCACAGTGCATAATCTATTTAAGGCTCTAGCTGGTGATGAACAAGGCATCTCTTTGAGCTTGTGGTTGACTTATGTTGATGAACTTCTCAAGGTTCACGAAGGAAGAAAATCATATCAGATACGAGAATCCCCGAACCTTTCTGAGGAGAGAATCTTATGCATTGGTTCCAGCAGGAAACGTCCTGTCCTAAAATGGGAGAACAATATGGCCTGGCCTGGAAAAGTTACTCTAACTGATAAAGCTATTTATTTTGAGGCAGCTGGCTTATTTGGACAGAATGATTCTATGAAGTTGGATTTGACAAGACCTGGATTGCGAGTAGAAAAAGCAAAAGTTGGACCTTTTGGTTCTGTTCTCTTTGATTCTGCGGTCTGTATATCTTATGGTCCCGAGTCAAAAGACACGTGGTTGCTGGAATTCGTTGACTTGGGTGGAGAAATGAGGCGAGATGTCTGGCATGCGTTTATTAGTGAGATTATTGTGTTACACAAGTTTATCGGGGAGTATGGTCCAAAGGAAGATGATGAATCGTTATTTCATGTTTATGGTGCTCACAAAGGAAAGGAAAGAGCTATCACCAGTGCCATTAATAGTATAGCTAGACTACAGGCTCTTCAATTTATGAGGAAGTTGCTAGATGATCCGACCAAACTAGTTCAGTTCACATATCTACAATATGCACCATATGGTGATATTGTTTCTCAGGCTCTAGCTGTAAACTATTGGGGTGGACCACTGATATCTAAGTTTATAGAGGAACACAACCCACCAGCTCAAGGAGCAAGGCCTTCTAGTGAAATGATTGAAAGCAGTAATCATGTGTTTGACGTTGATGGCAGTGTCTACTTACACAAGTGGAAGACCTCTCCATCTTGGGCTTCAAGTGCTTCTGTGAGCTTTTGGAAGAATGCATCAATAAGGCAGGGGGTGGTATTAAGTAAAAATCTTGTTGTTGCTCATTCAGCTCTAGTGGAAAGAGCTGCAGGAACATGCAAACAAAAATCGCAGGCAGCTGAAAAAACTCAAGCGACAATTGATGCTGCAATGCTTAAAGGGATACCCAGTAACATTGATCTATTCAAGGAACTTCTTCTTCCTCTGACCATAATTGCCACAAGATTTGAAAAACTTAGGCACTGGGAGGAGCCACACTTGACTATTTCTTTTCTTGCATTTTCATATACAATCATTTTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

583

Amino Acids

65.67

Weight (kDa)

7.68

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 506 - 583 1.1e-23 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 1395
AciI CCGC 3 cut(s) 11, 256, 920
AclWI GGATC 1 cut(s) 1187
AcsI RAATTY 3 cut(s) 28, 192, 968
AcuI CTGAAG 2 cut(s) 62, 401
AcvI CACGTG 1 cut(s) 957
AfaI GTAC 1 cut(s) 513
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 694, 745, 1328
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 8 cut(s) 28, 277, 326, 1169, 1358, 1434, 1633, 1676
AhlI ACTAGT 3 cut(s) 79, 89, 1204
AjnI CCWGG 3 cut(s) 761, 766, 859
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
Alw21I GWGCWC 1 cut(s) 1105
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 1187
Ama87I CYCGRG 1 cut(s) 941
Aor51HI AGCGCT 1 cut(s) 282
AoxI GGCC 3 cut(s) 759, 764, 1337
ApeKI GCWGC 6 cut(s) 206, 333, 809, 1532, 1562, 1592
ApoI RAATTY 3 cut(s) 28, 192, 968
AseI ATTAAT 2 cut(s) 171, 1140
Asp700I GAANNNNTTC 2 cut(s) 272, 1641
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 5 cut(s) 549, 890, 938, 1061, 1283
AsuHPI GGTGA 4 cut(s) 103, 596, 1120, 1253
AvaI CYCGRG 1 cut(s) 941
AvaII GGWCC 5 cut(s) 549, 890, 938, 1061, 1283
BbrPI CACGTG 1 cut(s) 957
BbsI GAAGAC 2 cut(s) 50, 1418
Bbv12I GWGCWC 1 cut(s) 1105
BbvI GCAGC 6 cut(s) 193, 320, 821, 1519, 1574, 1579
BccI CCATC 2 cut(s) 1379, 1429
BciT130I CCWGG 3 cut(s) 763, 768, 861
BciVI GTATCC 1 cut(s) 1602
BcoDI GTCTC 1 cut(s) 122
BcuI ACTAGT 3 cut(s) 79, 89, 1204
BfaI CTAG 9 cut(s) 80, 90, 578, 1152, 1187, 1205, 1262, 1344, 1520
BfmI CTRYAG 3 cut(s) 219, 1157, 1533
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 1602
BisI GCNGC 6 cut(s) 207, 334, 810, 1533, 1563, 1593
BlsI GCNGC 6 cut(s) 208, 335, 811, 1534, 1564, 1594
Bme1390I CCNGG 3 cut(s) 763, 768, 861
Bme18I GGWCC 5 cut(s) 549, 890, 938, 1061, 1283
BmeT110I CYCGRG 1 cut(s) 941
BmgT120I GGNCC 5 cut(s) 549, 890, 938, 1061, 1283
BmiI GGNNCC 5 cut(s) 387, 522, 718, 940, 1698
BmrFI CCNGG 3 cut(s) 763, 768, 861
BmrI ACTGGG 2 cut(s) 1608, 1699
BmsI GCATC 6 cut(s) 109, 298, 346, 606, 1472, 1579
BmuI ACTGGG 2 cut(s) 1608, 1699
BpiI GAAGAC 2 cut(s) 50, 1418
BpuEI CTTGAG 3 cut(s) 623, 1311, 1560
BsaAI YACGTR 1 cut(s) 957
BsaBI GATNNNNATC 1 cut(s) 369
Bsc4I CCNNNNNNNGG 3 cut(s) 694, 745, 1328
Bse1I ACTGG 5 cut(s) 103, 456, 1131, 1614, 1694
Bse3DI GCAATG 1 cut(s) 1602
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 3 cut(s) 763, 768, 861
BseGI GGATG 4 cut(s) 148, 243, 361, 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 694, 745, 1328
BseMI GCAATG 1 cut(s) 1602
BseMII CTCAG 2 cut(s) 684, 1268
BseNI ACTGG 5 cut(s) 103, 456, 1131, 1614, 1694
BseRI GAGGAG 2 cut(s) 710, 1709
BseXI GCAGC 6 cut(s) 193, 320, 821, 1519, 1574, 1579
BshFI GGCC 3 cut(s) 761, 766, 1339
BsiHKAI GWGCWC 1 cut(s) 1105
BsiHKCI CYCGRG 1 cut(s) 941
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 3 cut(s) 694, 745, 1328
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 924
BsmI GAATGC 2 cut(s) 392, 1465
BsnI GGCC 3 cut(s) 761, 766, 1339
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 1 cut(s) 1105
Bsp143I GATC 2 cut(s) 1192, 1624
BspACI CCGC 3 cut(s) 11, 256, 920
BspANI GGCC 3 cut(s) 761, 766, 1339
BspCNI CTCAG 2 cut(s) 685, 1267
BspLI GGNNCC 5 cut(s) 387, 522, 718, 940, 1698
BspMAI CTGCAG 1 cut(s) 1537
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 1187
BspQI GCTCTTC 1 cut(s) 1170
BsrDI GCAATG 1 cut(s) 1602
BsrI ACTGG 5 cut(s) 103, 456, 1131, 1614, 1694
BssMI GATC 2 cut(s) 1192, 1624
Bst2UI CCWGG 3 cut(s) 763, 768, 861
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 2 cut(s) 495, 1170
BstBAI YACGTR 1 cut(s) 957
BstC8I GCNNGC 4 cut(s) 423, 814, 1011, 1560
BstDEI CTNAG 4 cut(s) 693, 1254, 1296, 1682
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 4 cut(s) 148, 243, 361, 370
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 1195, 1627
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 1192, 1624
BstMWI GCNNNNNNNGC 4 cut(s) 262, 1331, 1436, 1514
BstNI CCWGG 3 cut(s) 763, 768, 861
BstNSI RCATGY 2 cut(s) 1013, 1545
BstSCI CCNGG 3 cut(s) 761, 766, 859
BstSFI CTRYAG 3 cut(s) 219, 1157, 1533
BstV1I GCAGC 6 cut(s) 193, 320, 821, 1519, 1574, 1579
BstV2I GAAGAC 2 cut(s) 50, 1418
BsuI GTATCC 1 cut(s) 1602
BsuRI GGCC 3 cut(s) 761, 766, 1339
BtsCI GGATG 4 cut(s) 148, 243, 361, 370
BtsI GCAGTG 1 cut(s) 1396
BtsIMutI CAGTG 6 cut(s) 463, 561, 1138, 1286, 1396, 1687
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 4 cut(s) 423, 814, 1011, 1560
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 5 cut(s) 549, 890, 938, 1061, 1283
Csp6I GTAC 1 cut(s) 512
CspCI CAANNNNNGTGG 2 cut(s) 1654, 1689
CviAII CATG 6 cut(s) 33, 426, 1010, 1091, 1370, 1542
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 4 cut(s) 693, 1254, 1296, 1682
DpnI GATC 2 cut(s) 1194, 1626
DpnII GATC 2 cut(s) 1192, 1624
DraI TTTAAA 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 495, 1170
EarI CTCTTC 2 cut(s) 495, 1170
EciI GGCGGA 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 1339
Eco32I GATATC 1 cut(s) 1293
Eco47I GGWCC 5 cut(s) 549, 890, 938, 1061, 1283
Eco47III AGCGCT 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 62, 401
Eco72I CACGTG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoRI GAATTC 3 cut(s) 28, 192, 968
EcoRII CCWGG 3 cut(s) 761, 766, 859
EcoRV GATATC 1 cut(s) 1293
EcoT22I ATGCAT 2 cut(s) 713, 1465
FaeI CATG 6 cut(s) 36, 429, 1013, 1094, 1373, 1545
FalI AAGNNNNNCTT 4 cut(s) 343, 375, 435, 467
FaqI GGGAC 1 cut(s) 924
FatI CATG 6 cut(s) 32, 425, 1009, 1090, 1369, 1541
FauNDI CATATG 1 cut(s) 1237
FblI GTMKAC 1 cut(s) 1395
Fnu4HI GCNGC 6 cut(s) 207, 334, 810, 1533, 1563, 1593
FokI GGATG 4 cut(s) 155, 250, 357, 368
Fsp4HI GCNGC 6 cut(s) 207, 334, 810, 1533, 1563, 1593
FspBI CTAG 9 cut(s) 80, 90, 578, 1152, 1187, 1205, 1262, 1344, 1520
GlaI GCGC 1 cut(s) 282
GluI GCNGC 6 cut(s) 207, 334, 810, 1533, 1563, 1593
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 3 cut(s) 761, 766, 1339
HhaI GCGC 1 cut(s) 283
Hin1II CATG 6 cut(s) 36, 429, 1013, 1094, 1373, 1545
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 618, 976
HindII GTYRAC 2 cut(s) 618, 976
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 8 cut(s) 293, 433, 677, 702, 833, 914, 944, 1079
HphI GGTGA 4 cut(s) 103, 596, 1120, 1253
Hpy166II GTNNAC 8 cut(s) 552, 618, 646, 976, 1215, 1270, 1283, 1396
Hpy188I TCNGA 8 cut(s) 96, 364, 466, 483, 669, 694, 1197, 1653
Hpy188III TCNNGA 4 cut(s) 290, 443, 647, 941
Hpy8I GTNNAC 8 cut(s) 552, 618, 646, 976, 1215, 1270, 1283, 1396
HpyAV CCTTC 4 cut(s) 376, 384, 644, 1350
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 4 cut(s) 514, 730, 956, 1380
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 1331, 1436, 1514
HpyF3I CTNAG 4 cut(s) 693, 1254, 1296, 1682
HpySE526I ACGT 4 cut(s) 514, 730, 956, 1380
Hsp92II CATG 6 cut(s) 36, 429, 1013, 1094, 1373, 1545
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 2 cut(s) 1192, 1624
LguI GCTCTTC 1 cut(s) 1170
LmnI GCTCC 3 cut(s) 526, 1331, 1696
Lsp1109I GCAGC 6 cut(s) 193, 320, 821, 1519, 1574, 1579
LweI GCATC 6 cut(s) 109, 298, 346, 606, 1472, 1579
MaeI CTAG 9 cut(s) 80, 90, 578, 1152, 1187, 1205, 1262, 1344, 1520
MaeII ACGT 4 cut(s) 514, 730, 956, 1380
MaeIII GTNAC 5 cut(s) 67, 109, 775, 1035, 1616
MalI GATC 2 cut(s) 1194, 1626
MboI GATC 2 cut(s) 1192, 1624
MboII GAAGA 9 cut(s) 55, 512, 666, 1082, 1157, 1423, 1468, 1634, 1637
MfeI CAATTG 1 cut(s) 1584
MhlI GDGCHC 1 cut(s) 1105
MluCI AATT 8 cut(s) 28, 192, 316, 528, 968, 1169, 1584, 1659
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 3 cut(s) 825, 868, 1220
MnlI CCTC 9 cut(s) 496, 688, 799, 987, 1170, 1300, 1426, 1659, 1687
Mph1103I ATGCAT 2 cut(s) 713, 1465
MroXI GAANNNNTTC 2 cut(s) 272, 1641
MseI TTAA 6 cut(s) 59, 171, 570, 1140, 1487, 1602
MslI CAYNNNNRTG 3 cut(s) 152, 416, 1095
MspA1I CMGCKG 2 cut(s) 812, 1565
MspR9I CCNGG 3 cut(s) 763, 768, 861
MunI CAATTG 1 cut(s) 1584
Mva1269I GAATGC 2 cut(s) 392, 1465
MvaI CCWGG 3 cut(s) 763, 768, 861
MwoI GCNNNNNNNGC 4 cut(s) 262, 1331, 1436, 1514
NdeI CATATG 1 cut(s) 1237
NdeII GATC 2 cut(s) 1192, 1624
NlaIII CATG 6 cut(s) 36, 429, 1013, 1094, 1373, 1545
NlaIV GGNNCC 5 cut(s) 387, 522, 718, 940, 1698
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 2 cut(s) 713, 1465
NspI RCATGY 2 cut(s) 1013, 1545
PaeI GCATGC 1 cut(s) 1013
PceI AGGCCT 1 cut(s) 1339
PciSI GCTCTTC 1 cut(s) 1170
PctI GAATGC 2 cut(s) 392, 1465
PdmI GAANNNNTTC 2 cut(s) 272, 1641
PfeI GAWTC 7 cut(s) 293, 433, 677, 702, 833, 914, 1079
PkrI GCNGC 6 cut(s) 208, 335, 811, 1534, 1564, 1594
PleI GAGTC 1 cut(s) 952
PmaCI CACGTG 1 cut(s) 957
PmlI CACGTG 1 cut(s) 957
PpsI GAGTC 1 cut(s) 952
Ppu21I YACGTR 1 cut(s) 957
PshBI ATTAAT 2 cut(s) 171, 1140
Psp6I CCWGG 3 cut(s) 761, 766, 859
PspCI CACGTG 1 cut(s) 957
PspGI CCWGG 3 cut(s) 761, 766, 859
PspN4I GGNNCC 5 cut(s) 387, 522, 718, 940, 1698
PspPI GGNCC 5 cut(s) 549, 890, 938, 1061, 1283
PstI CTGCAG 1 cut(s) 1537
PvuII CAGCTG 2 cut(s) 812, 1565
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 3 cut(s) 152, 416, 1095
SapI GCTCTTC 1 cut(s) 1170
SaqAI TTAA 6 cut(s) 59, 171, 570, 1140, 1487, 1602
SatI GCNGC 6 cut(s) 207, 334, 810, 1533, 1563, 1593
Sau3AI GATC 2 cut(s) 1192, 1624
Sau96I GGNCC 5 cut(s) 549, 890, 938, 1061, 1283
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 3 cut(s) 763, 768, 861
SduI GDGCHC 1 cut(s) 1105
SfaNI GCATC 6 cut(s) 109, 298, 346, 606, 1472, 1579
SfcI CTRYAG 3 cut(s) 219, 1157, 1533
SinI GGWCC 5 cut(s) 549, 890, 938, 1061, 1283
SmiMI CAYNNNNRTG 3 cut(s) 152, 416, 1095
SmlI CTYRAG 3 cut(s) 638, 1326, 1575
SmoI CTYRAG 3 cut(s) 638, 1326, 1575
SpeI ACTAGT 3 cut(s) 79, 89, 1204
SphI GCATGC 1 cut(s) 1013
Sse9I AATT 8 cut(s) 28, 192, 316, 528, 968, 1169, 1584, 1659
SseBI AGGCCT 1 cut(s) 1339
SsiI CCGC 3 cut(s) 11, 256, 920
SspI AATATT 2 cut(s) 273, 329
SspMI CTAG 9 cut(s) 80, 90, 578, 1152, 1187, 1205, 1262, 1344, 1520
StuI AGGCCT 1 cut(s) 1339
StyD4I CCNGG 3 cut(s) 761, 766, 859
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 4 cut(s) 517, 733, 959, 1383
TasI AATT 8 cut(s) 28, 192, 316, 528, 968, 1169, 1584, 1659
TfiI GAWTC 7 cut(s) 293, 433, 677, 702, 833, 914, 1079
Tru1I TTAA 6 cut(s) 59, 171, 570, 1140, 1487, 1602
Tru9I TTAA 6 cut(s) 59, 171, 570, 1140, 1487, 1602
TscAI CASTG 6 cut(s) 463, 561, 1138, 1293, 1396, 1694
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 6 cut(s) 206, 333, 809, 1532, 1562, 1592
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 6 cut(s) 463, 561, 1138, 1293, 1396, 1694
VpaK11BI GGWCC 5 cut(s) 549, 890, 938, 1061, 1283
VspI ATTAAT 2 cut(s) 171, 1140
XagI CCTNNNNNAGG 1 cut(s) 692
XapI RAATTY 3 cut(s) 28, 192, 968
XceI RCATGY 2 cut(s) 1013, 1545
XmiI GTMKAC 1 cut(s) 1395
XmnI GAANNNNTTC 2 cut(s) 272, 1641
XspI CTAG 9 cut(s) 80, 90, 578, 1152, 1187, 1205, 1262, 1344, 1520
Zsp2I ATGCAT 2 cut(s) 713, 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.