Rmu_sc0000305.1_g000002

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000305.1
OG0003186
Physical Location & Seq
Reverse (-)
6230 .. 6931
702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atgaggcgagatgtttggcatgcgtttattagtgagattattgtgttacacaagtttatcggggagtatggtccaaaggaagatgatgaatcgttatttcatgtttatggtgctcacaaaggaaaggaaagagctatcaccagtgtcattaatagtatagctagactacaggctcttcagtttatgaggaagttgctagatgatccgactaaaatagttcagttcacatatctacaatatgcaccatatggtgatattgtttcgcaggctctagcagtaaactattggggtggaccactgatatctaagtttatagaggaacacaacccaccagctcaaggagcaaggccttctagtgaaatgattgaaagcagtaaacatgtgtttgacattgatggcagtgtctacttacacaagtggaagacctctccatcttgggcttcaagtgcttctgtgagcttttggaagaatgcatcaataagtcagggggtggtgttaagtaaaaatattgttgttgctgattcagctctagtggaaagagccgcaggaacatgcaaacgaaaatcgcaggcagctgaaaaaactcaagccactattgatactgcaatgcttaaagggatacccagtaacatcgatctattcaagattggctctgaggtttgttctccacacaataagcatcatttggtccgaagtacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

8.95

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 176 - 215 5.9e-07 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 543
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 697
AfiI CCNNNNNNNGG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 3 cut(s) 368, 444, 643
AluBI AGCT 6 cut(s) 134, 161, 335, 459, 527, 575
AluI AGCT 6 cut(s) 134, 161, 335, 459, 527, 575
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 572
AseI ATTAAT 1 cut(s) 150
AspS9I GGNCC 3 cut(s) 71, 293, 688
AsuHPI GGTGA 2 cut(s) 130, 263
AvaII GGWCC 3 cut(s) 71, 293, 688
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 389, 439
BciVI GTATCC 1 cut(s) 612
BfaI CTAG 5 cut(s) 162, 197, 272, 354, 530
BfmI CTRYAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 2 cut(s) 543, 573
BlsI GCNGC 2 cut(s) 544, 574
BmcAI AGTACT 1 cut(s) 697
Bme18I GGWCC 3 cut(s) 71, 293, 688
BmgT120I GGNCC 3 cut(s) 71, 293, 688
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 2 cut(s) 482, 688
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 321, 570
Bsa29I ATCGAT 1 cut(s) 633
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 141, 624
Bse3DI GCAATG 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 633
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 141, 624
BseXI GCAGC 1 cut(s) 584
BshFI GGCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 633
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 338
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 202, 634
BspACI CCGC 1 cut(s) 543
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 633
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 612
BsrI ACTGG 2 cut(s) 141, 624
BssMI GATC 2 cut(s) 202, 634
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 21, 267, 570
BstDEI CTNAG 2 cut(s) 306, 654
BstKTI GATC 2 cut(s) 205, 637
BstMBI GATC 2 cut(s) 202, 634
BstMWI GCNNNNNNNGC 3 cut(s) 341, 446, 524
BstNSI RCATGY 3 cut(s) 23, 383, 555
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 633
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 349
BsuTUI ATCGAT 1 cut(s) 633
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 148, 296, 406
Cac8I GCNNGC 3 cut(s) 21, 267, 570
Cfr13I GGNCC 3 cut(s) 71, 293, 688
ClaI ATCGAT 1 cut(s) 633
Csp6I GTAC 1 cut(s) 696
CviAII CATG 4 cut(s) 20, 101, 380, 552
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 2 cut(s) 306, 654
DpnI GATC 2 cut(s) 204, 636
DpnII GATC 2 cut(s) 202, 634
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 349
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 3 cut(s) 71, 293, 688
Eco57I CTGAAG 1 cut(s) 161
EcoRV GATATC 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 475
FaeI CATG 4 cut(s) 23, 104, 383, 555
FatI CATG 4 cut(s) 19, 100, 379, 551
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 543, 573
Fsp4HI GCNGC 2 cut(s) 543, 573
FspBI CTAG 5 cut(s) 162, 197, 272, 354, 530
GluI GCNGC 2 cut(s) 543, 573
HaeIII GGCC 1 cut(s) 349
Hin1II CATG 4 cut(s) 23, 104, 383, 555
HinfI GANTC 2 cut(s) 89, 521
HphI GGTGA 2 cut(s) 130, 263
Hpy166II GTNNAC 5 cut(s) 225, 280, 293, 377, 406
Hpy188I TCNGA 3 cut(s) 207, 655, 692
Hpy188III TCNNGA 1 cut(s) 643
Hpy8I GTNNAC 5 cut(s) 225, 280, 293, 377, 406
HpyAV CCTTC 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 242, 473, 555, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 446, 524
HpyF3I CTNAG 2 cut(s) 306, 654
Hsp92II CATG 4 cut(s) 23, 104, 383, 555
Kzo9I GATC 2 cut(s) 202, 634
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 154, 155, 251, 345, 470, 531, 554, 637
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 482, 688
MaeI CTAG 5 cut(s) 162, 197, 272, 354, 530
MaeIII GTNAC 2 cut(s) 45, 626
MalI GATC 2 cut(s) 204, 636
MboI GATC 2 cut(s) 202, 634
MboII GAAGA 4 cut(s) 92, 167, 433, 478
MhlI GDGCHC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 4 cut(s) 180, 310, 436, 649
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 3 cut(s) 150, 497, 612
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 341, 446, 524
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 202, 634
NlaIII CATG 4 cut(s) 23, 104, 383, 555
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 3 cut(s) 23, 383, 555
PaeI GCATGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 180
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 89, 521
PkrI GCNGC 2 cut(s) 544, 574
PscI ACATGT 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 150
PspPI GGNCC 3 cut(s) 71, 293, 688
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 150, 497, 612
SatI GCNGC 2 cut(s) 543, 573
Sau3AI GATC 2 cut(s) 202, 634
Sau96I GGNCC 3 cut(s) 71, 293, 688
ScaI AGTACT 1 cut(s) 697
SduI GDGCHC 1 cut(s) 115
SetI ASST 8 cut(s) 136, 163, 337, 428, 461, 529, 577, 660
SfaNI GCATC 2 cut(s) 482, 688
SfcI CTRYAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 71, 293, 688
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 336, 585
SmoI CTYRAG 2 cut(s) 336, 585
SphI GCATGC 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 1 cut(s) 543
SspI AATATT 1 cut(s) 508
SspMI CTAG 5 cut(s) 162, 197, 272, 354, 530
StuI AGGCCT 1 cut(s) 349
TaqI TCGA 1 cut(s) 633
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 89, 521
Tru1I TTAA 3 cut(s) 150, 497, 612
Tru9I TTAA 3 cut(s) 150, 497, 612
TscAI CASTG 3 cut(s) 148, 303, 406
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 2 cut(s) 89, 102
TspRI CASTG 3 cut(s) 148, 303, 406
VpaK11BI GGWCC 3 cut(s) 71, 293, 688
VspI ATTAAT 1 cut(s) 150
XceI RCATGY 3 cut(s) 23, 383, 555
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 5 cut(s) 162, 197, 272, 354, 530
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.