Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

135208 .. 139508

Gene Structure 4301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atgatgaccatgaccatcatggccatggtcaccaaggccagagcttggtggggtcgaagcttcttcctgaggaattggcggaggatgtgtttggatctgagcttggtttgtgcatctggggaggctcatgttcacacccaccactgtaatcatggccatgatgaccatgaccatgaccatcatggccatggtcaccaaggccagagcttggtggggtcgaagcttcttcctgaggaattggcggaggaggaggatatgaagttgtatggatttgggtttcaacatgaccatgagcattttggtgctttgcagctctcggtgactggtctttggattcattcattgggatgctcgtttttggtcagcatggcttccctcatttgcctggttatcttgccagtaatattcgtacaggggaaaccatccaaggcagttgttgattcgttggctttatttggggctggagctatgttaggggatgctttccttcatcaattaccacatgcttttggtggagggcactcacatgacgaccatgttggccatcatcacgatcatagtgaacatgagcattcacatgcacattctttggaagatctttctgtaggaattgctgtcctggcgggaattgtattgtttcttttggtagaaaagatggtgaggtatgttgaggaacactctggaggaactaatgcattgggtcatggtcatcatcaccatcatcacagcaagaaattgaaggatgacaacgattctcatgatgacttgacatcagaatcttccactggaaaagatggacggaagccaaatgtgtcatctgaaggaaaagtggaaagtgaagttttaaatgattctttgaaggaaaattctcatcatgattctcaattgcgtaagagaaacactgccacaggtgataggaataataaacaagatgttaatgctgcagaagactcgagtcatgatactaaatcgttagatgtagaacctacacgatcacccaacaatcttgtgtttggttatctcaatctcttctcggacggtgttcacaatttcacagatgggatggctttaggaagtgctttcctgcttcatggtactgttggtgggtggtctagaactctattcttgcttgcgcatgagattcctcaagaggttggtgattttggtattctggtgaggtctggtttcagtgtatctaaggctctctttttcaatttcctctcagcacttgtggccctcgttggaactgcaatggctctgcttgtcggacaagatccgggacagtcatctttgatggagggttttacagctggtggatttatatacattgcggttgctggagtgcttgcagaaatgaataacaatggcaactcatcattgaaaagcacagcgatgcaattaacttcgttgatactcggcatgtcagttgctctatgtatttcactttatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

484

Amino Acids

52.61

Weight (kDa)

5.95

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	109 - 480	5.8e-55	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1134
AccB7I	CCANNNNNTGG	2 cut(s)	45, 208
AciI	CCGC	4 cut(s)	79, 242, 623, 1331
AclWI	GGATC	2 cut(s)	102, 1268
AcoI	YGGCCR	4 cut(s)	21, 154, 184, 541
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	411, 1096
AfiI	CCNNNNNNNGG	2 cut(s)	45, 208
AgsI	TTSAA	5 cut(s)	281, 739, 859, 1213, 1381
AjnI	CCWGG	2 cut(s)	384, 618
AluBI	AGCT	8 cut(s)	44, 60, 102, 207, 223, 313, 467, 1310
AluI	AGCT	8 cut(s)	44, 60, 102, 207, 223, 313, 467, 1310
AlwI	GGATC	2 cut(s)	102, 1268
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	7 cut(s)	21, 36, 154, 184, 199, 541, 1233
ApeKI	GCWGC	2 cut(s)	310, 941
ApoI	RAATTY	1 cut(s)	865
AspLEI	GCGC	1 cut(s)	1135
AspS9I	GGNCC	1 cut(s)	1234
AsuC2I	CCSGG	1 cut(s)	1278
AsuHPI	GGTGA	9 cut(s)	22, 185, 331, 670, 707, 923, 987, 1169, 1186
AvaI	CYCGRG	1 cut(s)	952
AxyI	CCTNAGG	2 cut(s)	68, 231
BaeGI	GKGCMC	1 cut(s)	522
BalI	TGGCCA	4 cut(s)	23, 156, 186, 543
BbsI	GAAGAC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	322, 928
BcgI	CGANNNNNNTGC	2 cut(s)	933, 967
BciT130I	CCWGG	2 cut(s)	386, 620
BcnI	CCSGG	1 cut(s)	1278
BfaI	CTAG	1 cut(s)	1113
BfmI	CTRYAG	2 cut(s)	603, 942
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	2 cut(s)	311, 942
BlsI	GCNGC	2 cut(s)	312, 943
Bme1390I	CCNGG	3 cut(s)	386, 620, 1278
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	1234
BmrFI	CCNGG	3 cut(s)	386, 620, 1278
BmsI	GCATC	4 cut(s)	122, 338, 469, 1383
BoxI	GACNNNNGTC	1 cut(s)	954
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpmI	CTGGAG	3 cut(s)	483, 702, 1359
BpuEI	CTTGAG	1 cut(s)	1131
BpuMI	CCSGG	1 cut(s)	1278
BsaJI	CCNNGG	5 cut(s)	24, 33, 187, 196, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 208
Bse1I	ACTGG	3 cut(s)	328, 398, 790
Bse21I	CCTNAGG	2 cut(s)	68, 231
Bse3DI	GCAATG	2 cut(s)	1257, 1326
BseBI	CCWGG	2 cut(s)	386, 620
BseDI	CCNNGG	5 cut(s)	24, 33, 187, 196, 426
BseGI	GGATG	6 cut(s)	90, 353, 422, 484, 748, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	45, 208
BseMI	GCAATG	2 cut(s)	1257, 1326
BseMII	CTCAG	4 cut(s)	59, 89, 222, 1236
BseNI	ACTGG	3 cut(s)	328, 398, 790
BseRI	GAGGAG	2 cut(s)	260, 263
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	322, 928
BshFI	GGCC	7 cut(s)	23, 38, 156, 186, 201, 543, 1235
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	1277
BslFI	GGGAC	1 cut(s)	1293
BslI	CCNNNNNNNGG	2 cut(s)	45, 208
BsmFI	GGGAC	1 cut(s)	1293
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	7 cut(s)	23, 38, 156, 186, 201, 543, 1235
BsoBI	CYCGRG	1 cut(s)	952
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	5 cut(s)	94, 553, 595, 992, 1273
Bsp19I	CCATGG	2 cut(s)	24, 187
BspACI	CCGC	4 cut(s)	79, 242, 623, 1331
BspANI	GGCC	7 cut(s)	23, 38, 156, 186, 201, 543, 1235
BspCNI	CTCAG	4 cut(s)	60, 90, 223, 1235
BspHI	TCATGA	3 cut(s)	757, 874, 958
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	2 cut(s)	102, 1268
BsrDI	GCAATG	2 cut(s)	1257, 1326
BsrI	ACTGG	3 cut(s)	328, 398, 790
BssECI	CCNNGG	5 cut(s)	24, 33, 187, 196, 426
BssMI	GATC	5 cut(s)	94, 553, 595, 992, 1273
BssT1I	CCWWGG	5 cut(s)	24, 33, 187, 196, 426
Bst2UI	CCWGG	2 cut(s)	386, 620
Bst4CI	ACNGT	4 cut(s)	146, 1040, 1099, 1284
Bst6I	CTCTTC	1 cut(s)	1034
BstC8I	GCNNGC	2 cut(s)	1131, 1347
BstDEI	CTNAG	5 cut(s)	68, 98, 231, 1197, 1222
BstDSI	CCRYGG	2 cut(s)	24, 187
BstEII	GGTNACC	2 cut(s)	28, 191
BstF5I	GGATG	6 cut(s)	90, 353, 422, 484, 748, 1068
BstHHI	GCGC	1 cut(s)	1135
BstKTI	GATC	5 cut(s)	97, 556, 598, 995, 1276
BstMBI	GATC	5 cut(s)	94, 553, 595, 992, 1273
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 1232
BstNI	CCWGG	2 cut(s)	386, 620
BstNSI	RCATGY	3 cut(s)	506, 581, 1423
BstPAI	GACNNNNGTC	1 cut(s)	954
BstPI	GGTNACC	2 cut(s)	28, 191
BstSCI	CCNGG	3 cut(s)	384, 618, 1276
BstSFI	CTRYAG	2 cut(s)	603, 942
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	322, 928
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	3 cut(s)	94, 595, 1273
BstYI	RGATCY	3 cut(s)	94, 595, 1273
Bsu36I	CCTNAGG	2 cut(s)	68, 231
BsuRI	GGCC	7 cut(s)	23, 38, 156, 186, 201, 543, 1235
BtgI	CCRYGG	2 cut(s)	24, 187
BtgZI	GCGATG	1 cut(s)	1406
BtsCI	GGATG	6 cut(s)	90, 353, 422, 484, 748, 1068
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	4 cut(s)	142, 783, 900, 1195
Cac8I	GCNNGC	2 cut(s)	1131, 1347
CciI	TCATGA	3 cut(s)	757, 874, 958
CfoI	GCGC	1 cut(s)	1135
Cfr13I	GGNCC	1 cut(s)	1234
Csp6I	GTAC	2 cut(s)	410, 1095
CviQI	GTAC	2 cut(s)	410, 1095
DdeI	CTNAG	5 cut(s)	68, 98, 231, 1197, 1222
DpnI	GATC	5 cut(s)	96, 555, 597, 994, 1275
DpnII	GATC	5 cut(s)	94, 553, 595, 992, 1273
DraI	TTTAAA	1 cut(s)	846
EaeI	YGGCCR	4 cut(s)	21, 154, 184, 541
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
EciI	GGCGGA	2 cut(s)	94, 257
Eco130I	CCWWGG	5 cut(s)	24, 33, 187, 196, 426
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	2 cut(s)	68, 231
Eco88I	CYCGRG	1 cut(s)	952
Eco91I	GGTNACC	2 cut(s)	28, 191
EcoO65I	GGTNACC	2 cut(s)	28, 191
EcoRII	CCWGG	2 cut(s)	384, 618
EcoT14I	CCWWGG	5 cut(s)	24, 33, 187, 196, 426
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	5 cut(s)	24, 33, 187, 196, 426
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FaqI	GGGAC	1 cut(s)	1293
FauI	CCCGC	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	311, 942
FokI	GGATG	6 cut(s)	97, 360, 409, 491, 755, 1075
Fsp4HI	GCNGC	2 cut(s)	311, 942
FspBI	CTAG	1 cut(s)	1113
FspI	TGCGCA	1 cut(s)	1134
GlaI	GCGC	1 cut(s)	1134
GluI	GCNGC	2 cut(s)	311, 942
GsuI	CTGGAG	3 cut(s)	483, 702, 1359
HaeIII	GGCC	7 cut(s)	23, 38, 156, 186, 201, 543, 1235
HapII	CCGG	1 cut(s)	1277
HhaI	GCGC	1 cut(s)	1135
Hin6I	GCGC	1 cut(s)	1133
HinP1I	GCGC	1 cut(s)	1133
HindIII	AAGCTT	2 cut(s)	58, 221
HinfI	GANTC	9 cut(s)	334, 440, 752, 776, 851, 878, 950, 955, 1141
HpaII	CCGG	1 cut(s)	1277
HphI	GGTGA	9 cut(s)	22, 185, 331, 670, 707, 923, 987, 1169, 1186
Hpy166II	GTNNAC	3 cut(s)	133, 563, 1045
Hpy188I	TCNGA	5 cut(s)	99, 775, 820, 1036, 1268
Hpy188III	TCNNGA	9 cut(s)	67, 230, 551, 681, 758, 875, 959, 1113, 1148
Hpy8I	GTNNAC	3 cut(s)	133, 563, 1045
HpyAV	CCTTC	4 cut(s)	497, 733, 815, 853
HpyCH4III	ACNGT	4 cut(s)	146, 1040, 1099, 1284
HpyCH4V	TGCA	8 cut(s)	113, 310, 581, 695, 944, 1250, 1349, 1396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 1232
HpyF3I	CTNAG	5 cut(s)	68, 98, 231, 1197, 1222
HspAI	GCGC	1 cut(s)	1133
Kzo9I	GATC	5 cut(s)	94, 553, 595, 992, 1273
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	2 cut(s)	322, 928
LweI	GCATC	4 cut(s)	122, 338, 469, 1383
MaeI	CTAG	1 cut(s)	1113
MaeIII	GTNAC	3 cut(s)	28, 191, 319
MalI	GATC	5 cut(s)	96, 555, 597, 994, 1275
MboI	GATC	5 cut(s)	94, 553, 595, 992, 1273
MboII	GAAGA	6 cut(s)	55, 218, 605, 771, 959, 1021
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	3 cut(s)	94, 595, 1273
MhlI	GDGCHC	1 cut(s)	522
MlsI	TGGCCA	4 cut(s)	23, 156, 186, 543
MluNI	TGGCCA	4 cut(s)	23, 156, 186, 543
MlyI	GAGTC	2 cut(s)	944, 964
MmeI	TCCRAC	2 cut(s)	1222, 1246
Mox20I	TGGCCA	4 cut(s)	23, 156, 186, 543
Mph1103I	ATGCAT	1 cut(s)	697
MscI	TGGCCA	4 cut(s)	23, 156, 186, 543
MseI	TTAA	3 cut(s)	845, 936, 1400
Msp20I	TGGCCA	4 cut(s)	23, 156, 186, 543
MspA1I	CMGCKG	1 cut(s)	1310
MspI	CCGG	1 cut(s)	1277
MspR9I	CCNGG	3 cut(s)	386, 620, 1278
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	386, 620
MwoI	GCNNNNNNNGC	2 cut(s)	620, 1232
NciI	CCSGG	1 cut(s)	1278
NcoI	CCATGG	2 cut(s)	24, 187
NdeII	GATC	5 cut(s)	94, 553, 595, 992, 1273
NmeAIII	GCCGAG	1 cut(s)	1395
NmuCI	GTSAC	3 cut(s)	28, 191, 319
NsbI	TGCGCA	1 cut(s)	1134
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	3 cut(s)	506, 581, 1423
PaeR7I	CTCGAG	1 cut(s)	952
PagI	TCATGA	3 cut(s)	757, 874, 958
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	7 cut(s)	334, 440, 752, 776, 851, 878, 1141
PflMI	CCANNNNNTGG	2 cut(s)	45, 208
PfoI	TCCNGGA	1 cut(s)	1276
PkrI	GCNGC	2 cut(s)	312, 943
PleI	GAGTC	2 cut(s)	944, 963
PpsI	GAGTC	2 cut(s)	944, 963
PshAI	GACNNNNGTC	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	384, 618
PspEI	GGTNACC	2 cut(s)	28, 191
PspGI	CCWGG	2 cut(s)	384, 618
PspPI	GGNCC	1 cut(s)	1234
PspXI	VCTCGAGB	1 cut(s)	952
PstI	CTGCAG	1 cut(s)	946
PsuI	RGATCY	3 cut(s)	94, 595, 1273
PvuII	CAGCTG	1 cut(s)	1310
RsaI	GTAC	2 cut(s)	411, 1096
RsaNI	GTAC	2 cut(s)	410, 1095
SaqAI	TTAA	3 cut(s)	845, 936, 1400
SatI	GCNGC	2 cut(s)	311, 942
Sau3AI	GATC	5 cut(s)	94, 553, 595, 992, 1273
Sau96I	GGNCC	1 cut(s)	1234
SchI	GAGTC	2 cut(s)	944, 964
ScrFI	CCNGG	3 cut(s)	386, 620, 1278
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	4 cut(s)	122, 338, 469, 1383
SfcI	CTRYAG	2 cut(s)	603, 942
Sfr274I	CTCGAG	1 cut(s)	952
SlaI	CTCGAG	1 cut(s)	952
SmlI	CTYRAG	2 cut(s)	952, 1146
SmoI	CTYRAG	2 cut(s)	952, 1146
SsiI	CCGC	4 cut(s)	79, 242, 623, 1331
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	1113
StyD4I	CCNGG	3 cut(s)	384, 618, 1276
StyI	CCWWGG	5 cut(s)	24, 33, 187, 196, 426
TaaI	ACNGT	4 cut(s)	146, 1040, 1099, 1284
TaqI	TCGA	3 cut(s)	55, 218, 953
TfiI	GAWTC	7 cut(s)	334, 440, 752, 776, 851, 878, 1141
Tru1I	TTAA	3 cut(s)	845, 936, 1400
Tru9I	TTAA	3 cut(s)	845, 936, 1400
TscAI	CASTG	4 cut(s)	149, 790, 907, 1195
TseFI	GTSAC	3 cut(s)	28, 191, 319
TseI	GCWGC	2 cut(s)	310, 941
Tsp45I	GTSAC	3 cut(s)	28, 191, 319
TspDTI	ATGAA	6 cut(s)	272, 326, 330, 479, 1079, 1370
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	4 cut(s)	149, 790, 907, 1195
Van91I	CCANNNNNTGG	2 cut(s)	45, 208
XapI	RAATTY	1 cut(s)	865
XbaI	TCTAGA	1 cut(s)	1112
XceI	RCATGY	3 cut(s)	506, 581, 1423
XcmI	CCANNNNNNNNNTGG	6 cut(s)	16, 22, 149, 179, 185, 296
XhoI	CTCGAG	1 cut(s)	952
XspI	CTAG	1 cut(s)	1113
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.