Rmu_sc0000334.1_g000056

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000334.1
OG0009545
Physical Location & Seq
Reverse (-)
276649 .. 282389
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1242 bp
atgccatctggaggggactgtcgaccagatgacgcatcagaggggactgcagaccagaatattctagaggggactgccgaccagaatgttgtctggaggggactgccgaccagattaacaatacccattcacagttggaagcccatcatcaatctgaccaaatccaacatgagtattactaagccatatccagtgaccttttcatatctgatctcagcttcaaaaggcgattcgctgaagctcaaacgcatgctctatgcgctttatcatcctggaaattactatctgatccacatggattatgaagcaacggaggcagagcacagagacatagctgagtttgtgggtggaaatccagtttttggggaagtgggtaatgtttggattgtgggaaaacccaatttggtaacctatagaggaccaaccatgcttgctaccactattcatgctttggctttgctcttgaggacttgcagatgggattggttcatcaatctcagtgcttctgactaccctctaattactcaagatgatctgatccatgccttttctgacttgccaagagatctcaatttcattcagcactccagtcacttgggttggaaactgaataagagaggcaagcccattacaatagacccagcactctacagcctcaataaatcagaattatggtgggttattaaacaaagggctctcccaactgctttcaagctatacacaggttcagcttggacaatgatatcaagatcttttgccgagtattgcgtagtgggttgggacaatctgcccagaaccctcctcctctactacaccaactttgtctcatctccggaaggttacttccagactgtcatatgcaactcagaagactacaaaaacaccacgatcaaccatgacctccactacatttcatgggatacacctccaaagcagcatcccaggtctctcggactccgagactttaaaagaatggttcaaagcaaccgtccatttgctagaaagttcaagcaaaatgccccggtgcttaaaaaaattgatcaacaactgcttaaacgacgccgtggagaatttgcttatggtggatggtgttcggggaaagaaaagacgcagaggtcatgctcaggtttgcagagtgaaaattatggagttttaaggccaggacccggatctaggaggttgaagttcttgttaacaaaactcctttccacgaggaatcatcagaagcaacagtgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

413

Amino Acids

47.34

Weight (kDa)

9.54

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 68 - 325 1.9e-72 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1114
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 832
AclWI GGATC 3 cut(s) 283, 532, 1177
AcsI RAATTY 1 cut(s) 1070
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 1060
AfiI CCNNNNNNNGG 4 cut(s) 11, 362, 1166, 1173
AgsI TTSAA 5 cut(s) 222, 712, 980, 1009, 1183
AjnI CCWGG 3 cut(s) 271, 941, 1159
AluBI AGCT 5 cut(s) 218, 241, 335, 715, 731
AluI AGCT 5 cut(s) 218, 241, 335, 715, 731
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 4 cut(s) 321, 829, 951, 954
AlwI GGATC 3 cut(s) 283, 532, 1177
Aor13HI TCCGGA 1 cut(s) 832
AoxI GGCC 1 cut(s) 1157
ApeKI GCWGC 1 cut(s) 934
ApoI RAATTY 1 cut(s) 1070
ArsI GACNNNNNNTTYG 2 cut(s) 973, 1005
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 419, 1163
AsuC2I CCSGG 2 cut(s) 1022, 1167
AvaII GGWCC 2 cut(s) 419, 1163
BanII GRGCYC 1 cut(s) 697
BauI CACGAG 1 cut(s) 1210
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 946
BccI CCATC 4 cut(s) 13, 152, 471, 1080
BceAI ACGGC 1 cut(s) 1047
BciT130I CCWGG 3 cut(s) 273, 943, 1161
BciVI GTATCC 1 cut(s) 913
BclI TGATCA 1 cut(s) 1039
BcnI CCSGG 2 cut(s) 1022, 1167
BcoDI GTCTC 4 cut(s) 321, 829, 951, 954
BfaI CTAG 3 cut(s) 65, 999, 1173
BfmI CTRYAG 3 cut(s) 48, 412, 649
BfuI GTATCC 1 cut(s) 913
BglII AGATCT 2 cut(s) 565, 749
BisI GCNGC 1 cut(s) 935
BlsI GCNGC 1 cut(s) 936
Bme1390I CCNGG 5 cut(s) 273, 943, 1022, 1161, 1167
Bme18I GGWCC 2 cut(s) 419, 1163
BmgT120I GGNCC 2 cut(s) 419, 1163
BmiI GGNNCC 1 cut(s) 1165
BmrFI CCNGG 5 cut(s) 273, 943, 1022, 1161, 1167
BmsI GCATC 2 cut(s) 44, 946
BpiI GAAGAC 1 cut(s) 876
BpmI CTGGAG 3 cut(s) 30, 115, 571
Bpu10I CCTNAGC 1 cut(s) 1123
BpuEI CTTGAG 2 cut(s) 484, 510
BpuMI CCSGG 2 cut(s) 1022, 1167
BsaHI GRCGYC 1 cut(s) 1060
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 3 cut(s) 941, 1020, 1063
BsaWI WCCGGW 1 cut(s) 832
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 362, 1166, 1173
Bse1I ACTGG 3 cut(s) 191, 356, 588
BseAI TCCGGA 1 cut(s) 832
BseBI CCWGG 3 cut(s) 273, 943, 1161
BseDI CCNNGG 3 cut(s) 941, 1020, 1063
BseGI GGATG 3 cut(s) 268, 937, 1091
BseLI CCNNNNNNNGG 4 cut(s) 11, 362, 1166, 1173
BseMII CTCAG 5 cut(s) 228, 327, 511, 879, 1137
BseNI ACTGG 3 cut(s) 191, 356, 588
BseRI GAGGAG 2 cut(s) 791, 794
BseXI GCAGC 1 cut(s) 946
BseYI CCCAGC 1 cut(s) 640
BshFI GGCC 1 cut(s) 1159
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 3 cut(s) 833, 1022, 1167
BslFI GGGAC 5 cut(s) 29, 58, 85, 114, 794
BslI CCNNNNNNNGG 4 cut(s) 11, 362, 1166, 1173
BsmAI GTCTC 4 cut(s) 321, 829, 951, 954
BsmFI GGGAC 5 cut(s) 29, 58, 85, 114, 794
BsnI GGCC 1 cut(s) 1159
Bso31I GGTCTC 1 cut(s) 951
Bsp1286I GDGCHC 2 cut(s) 324, 697
Bsp13I TCCGGA 1 cut(s) 832
Bsp143I GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
BspANI GGCC 1 cut(s) 1159
BspCNI CTCAG 5 cut(s) 227, 328, 510, 878, 1136
BspEI TCCGGA 1 cut(s) 832
BspLI GGNNCC 1 cut(s) 1165
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 3 cut(s) 283, 532, 1177
BspTNI GGTCTC 1 cut(s) 951
BsrI ACTGG 3 cut(s) 191, 356, 588
BssECI CCNNGG 3 cut(s) 941, 1020, 1063
BssMI GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
BssNI GRCGYC 1 cut(s) 1060
BssSI CACGAG 1 cut(s) 1210
Bst2BI CACGAG 1 cut(s) 1210
Bst2UI CCWGG 3 cut(s) 273, 943, 1161
Bst4CI ACNGT 5 cut(s) 20, 134, 853, 989, 1233
BstACI GRCGYC 1 cut(s) 1060
BstC8I GCNNGC 3 cut(s) 251, 432, 623
BstDEI CTNAG 6 cut(s) 180, 214, 336, 497, 865, 1123
BstDSI CCRYGG 1 cut(s) 1063
BstEII GGTNACC 1 cut(s) 406
BstF5I GGATG 3 cut(s) 268, 937, 1091
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 9 cut(s) 213, 291, 535, 540, 568, 752, 891, 1042, 1172
BstMAI GTCTC 4 cut(s) 321, 829, 951, 954
BstMBI GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
BstMWI GCNNNNNNNGC 2 cut(s) 259, 314
BstNI CCWGG 3 cut(s) 273, 943, 1161
BstNSI RCATGY 1 cut(s) 253
BstPI GGTNACC 1 cut(s) 406
BstSCI CCNGG 5 cut(s) 271, 941, 1020, 1159, 1165
BstSFI CTRYAG 3 cut(s) 48, 412, 649
BstV1I GCAGC 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 3 cut(s) 565, 749, 1169
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 3 cut(s) 565, 749, 1169
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 1 cut(s) 1159
BtgI CCRYGG 1 cut(s) 1063
BtsCI GGATG 3 cut(s) 268, 937, 1091
BtsIMutI CAGTG 3 cut(s) 198, 505, 1238
Cac8I GCNNGC 3 cut(s) 251, 432, 623
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 419, 1163
CseI GACGC 3 cut(s) 41, 1068, 1117
CviAII CATG 9 cut(s) 169, 250, 295, 427, 446, 542, 896, 915, 1119
DdeI CTNAG 6 cut(s) 180, 214, 336, 497, 865, 1123
DpnI GATC 9 cut(s) 212, 290, 534, 539, 567, 751, 890, 1041, 1171
DpnII GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
DraI TTTAAA 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 1114
DseDI GACNNNNNNGTC 1 cut(s) 1114
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 951
Eco32I GATATC 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 419, 1163
Eco57I CTGAAG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 1163
EcoO65I GGTNACC 1 cut(s) 406
EcoRII CCWGG 3 cut(s) 271, 941, 1159
EcoRV GATATC 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 9 cut(s) 172, 253, 298, 430, 449, 545, 899, 918, 1122
FaqI GGGAC 5 cut(s) 29, 58, 85, 114, 794
FatI CATG 9 cut(s) 168, 249, 294, 426, 445, 541, 895, 914, 1118
FauNDI CATATG 1 cut(s) 857
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 935
FokI GGATG 3 cut(s) 255, 924, 1098
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 1 cut(s) 935
FspBI CTAG 3 cut(s) 65, 999, 1173
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 935
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 3 cut(s) 30, 115, 571
HaeIII GGCC 1 cut(s) 1159
HapII CCGG 3 cut(s) 833, 1022, 1167
HgaI GACGC 3 cut(s) 41, 1068, 1117
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 1060
Hin1II CATG 9 cut(s) 172, 253, 298, 430, 449, 545, 899, 918, 1122
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 2 cut(s) 23, 1194
HindII GTYRAC 2 cut(s) 23, 1194
HinfI GANTC 3 cut(s) 230, 954, 1216
HpaI GTTAAC 1 cut(s) 1194
HpaII CCGG 3 cut(s) 833, 1022, 1167
Hpy166II GTNNAC 2 cut(s) 23, 1194
Hpy188III TCNNGA 8 cut(s) 9, 65, 94, 463, 527, 747, 833, 847
Hpy8I GTNNAC 2 cut(s) 23, 1194
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 5 cut(s) 20, 134, 853, 989, 1233
HpyCH4V TGCA 5 cut(s) 50, 474, 861, 1132, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 314
HpyF3I CTNAG 6 cut(s) 180, 214, 336, 497, 865, 1123
Hsp92I GRCGYC 1 cut(s) 1060
Hsp92II CATG 9 cut(s) 172, 253, 298, 430, 449, 545, 899, 918, 1122
HspAI GCGC 1 cut(s) 260
Kpn2I TCCGGA 1 cut(s) 832
Ksp22I TGATCA 1 cut(s) 1039
KspAI GTTAAC 1 cut(s) 1194
Kzo9I GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 2 cut(s) 44, 946
MaeI CTAG 3 cut(s) 65, 999, 1173
MaeIII GTNAC 4 cut(s) 193, 406, 590, 839
MalI GATC 9 cut(s) 212, 290, 534, 539, 567, 751, 890, 1041, 1171
MboI GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
MboII GAAGA 1 cut(s) 881
MflI RGATCY 3 cut(s) 565, 749, 1169
MhlI GDGCHC 2 cut(s) 324, 697
MluCI AATT 8 cut(s) 277, 400, 519, 571, 668, 1035, 1070, 1141
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 3 cut(s) 116, 189, 581
MroI TCCGGA 1 cut(s) 832
MseI TTAA 7 cut(s) 116, 684, 966, 1029, 1053, 1154, 1193
MspI CCGG 3 cut(s) 833, 1022, 1167
MspR9I CCNGG 5 cut(s) 273, 943, 1022, 1161, 1167
MvaI CCWGG 3 cut(s) 273, 943, 1161
MwoI GCNNNNNNNGC 2 cut(s) 259, 314
NciI CCSGG 2 cut(s) 1022, 1167
NdeI CATATG 1 cut(s) 857
NdeII GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
NlaIII CATG 9 cut(s) 172, 253, 298, 430, 449, 545, 899, 918, 1122
NlaIV GGNNCC 1 cut(s) 1165
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 193, 590
NspI RCATGY 1 cut(s) 253
PaeI GCATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 230, 1216
PflMI CCANNNNNTGG 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 1 cut(s) 936
PleI GAGTC 1 cut(s) 948
PpsI GAGTC 1 cut(s) 948
PpuMI RGGWCCY 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 3 cut(s) 271, 941, 1159
PspEI GGTNACC 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 271, 941, 1159
PspN4I GGNNCC 1 cut(s) 1165
PspPI GGNCC 2 cut(s) 419, 1163
PspPPI RGGWCCY 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 3 cut(s) 565, 749, 1169
SalI GTCGAC 1 cut(s) 21
SaqAI TTAA 7 cut(s) 116, 684, 966, 1029, 1053, 1154, 1193
SatI GCNGC 1 cut(s) 935
Sau3AI GATC 9 cut(s) 210, 288, 532, 537, 565, 749, 888, 1039, 1169
Sau96I GGNCC 2 cut(s) 419, 1163
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 5 cut(s) 273, 943, 1022, 1161, 1167
SduI GDGCHC 2 cut(s) 324, 697
SfaNI GCATC 2 cut(s) 44, 946
SfcI CTRYAG 3 cut(s) 48, 412, 649
SinI GGWCC 2 cut(s) 419, 1163
SmlI CTYRAG 2 cut(s) 463, 525
SmoI CTYRAG 2 cut(s) 463, 525
SphI GCATGC 1 cut(s) 253
Sse9I AATT 8 cut(s) 277, 400, 519, 571, 668, 1035, 1070, 1141
SspI AATATT 1 cut(s) 61
SspMI CTAG 3 cut(s) 65, 999, 1173
StyD4I CCNGG 5 cut(s) 271, 941, 1020, 1159, 1165
TaaI ACNGT 5 cut(s) 20, 134, 853, 989, 1233
TaqI TCGA 1 cut(s) 22
TasI AATT 8 cut(s) 277, 400, 519, 571, 668, 1035, 1070, 1141
TfiI GAWTC 2 cut(s) 230, 1216
Tru1I TTAA 7 cut(s) 116, 684, 966, 1029, 1053, 1154, 1193
Tru9I TTAA 7 cut(s) 116, 684, 966, 1029, 1053, 1154, 1193
TscAI CASTG 3 cut(s) 198, 505, 1238
TseFI GTSAC 2 cut(s) 193, 590
TseI GCWGC 1 cut(s) 934
Tsp45I GTSAC 2 cut(s) 193, 590
TspDTI ATGAA 6 cut(s) 192, 318, 434, 478, 565, 903
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 3 cut(s) 198, 505, 1238
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 419, 1163
XapI RAATTY 1 cut(s) 1070
XbaI TCTAGA 1 cut(s) 64
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 3 cut(s) 65, 999, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.