Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0005633

Physical Location & Seq

Genomic Coordinates Reverse (-)

126777 .. 130374

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgaacttcacattgtctttttggagaaggaaccttgcggataaagttgctgcagctggatttttcgtggtggttcccgatttcttttatggcgaccctgtgaattttgataatcctcaattcgaccgagagtcctggttaatagctcacagcaaggaaaaaggatacgaggattctaaatcagtccttgctgcattaaagagtcaaggtgtttctgcaataggagctgcaggattttgctggggaggggttgtagtggcaaaacttgcaaaatctgatgacattaaggctgctgtgatattgcatcctggccggttagcagatgaagatatacatgaggttaaggttcatactgcaatattgggagctgagattgacaaaacttcaccaccagaacaattgaaacaatttgaggagattttatcagtgaagtctgaggtaagaattcctcagcaaaactactcattgcttaatatacttatcacatgtatctggtatgatgctccaaacttgaggaagctcgcagacaaagttgcagctgctggcttctttgttgtggtccctgacttcttttatggagacccttatgtacctccagctgatggatcccgggactctctacctacttggctgaaaggtcatggaccggagaagggatttgaagatgttaaactagttattggagctctaaaaagtaaaggcgtctctgcaatcggtgctgcaggcttctgttggggagccaaggttgtagttgaacttgcaaagggtgactttatccaagctgctgttctggctcatccttctttagtcactgtggatgatatcaaggctgttaaggttccaataactatacttggagctgagattgatcagatgtctccgcctgaagtcgtgaaacaagttgaagaggctttggctgcaaagtctgagatcaaaagtcatgtgaagatattcccaaaagtgtcgcatggatgtactgtgaggtatgatgtttcagacaaagaagctgtgaaggcagctgaggatgctcataaagatttgttggagtggtttgtgaaccatgtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

356

Amino Acids

38.78

Weight (kDa)

5.84

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37550 AT2G37550
fragaria_vesca	FvH4_6g14160 FvH4_6g14160 FvH4_6g14160
malus_domestica	MD04G1124300.v1.1 MD12G1139600.v1.1
prunus_persica	Prupe.6G251500_v2.0.a1 Prupe.6G251500_v2.0.a1
pyrus_communis	pycom04g11210 pycom12g13410
rosa_chinensis	RchiOBHm_Chr3g0467101
rosa_laevigata	RLG00000007853 RLG00000024526
rosa_multiflora	Rmu_sc0000363.1_g000029 Rmu_sc0000723.1_g000006 Rmu_ssc0000065.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027930 Rroxscaffold_6G00413890
rosa_rugosa	Rorug03G0085500 Rorug06G0179000
rosa_samantha	Rh2BG303700 Rh3AG133500 Rh3BG154700 Rh3CG154400 Rh3DG155500 Rh4CG176600
rosa_wichuraiana	Rw3G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	2 cut(s)	38, 881
AclWI	GGATC	2 cut(s)	600, 613
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	103, 444
AcuI	CTGAAG	1 cut(s)	906
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	2 cut(s)	591, 976
AfiI	CCNNNNNNNGG	2 cut(s)	602, 653
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	403, 662, 755, 905
AhdI	GACNNNNNGTC	1 cut(s)	130
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	134, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	3 cut(s)	573, 709, 882
AlwI	GGATC	2 cut(s)	600, 613
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	103, 444
Asp700I	GAANNNNTTC	1 cut(s)	950
AspS9I	GGNCC	2 cut(s)	559, 644
AsuC2I	CCSGG	2 cut(s)	610, 611
AsuHPI	GGTGA	2 cut(s)	378, 779
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	2 cut(s)	559, 644
BamHI	GGATCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	688
BbvCI	CCTCAGC	2 cut(s)	450, 1020
BccI	CCATC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	136, 309
BciVI	GTATCC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	2 cut(s)	610, 611
BcoDI	GTCTC	3 cut(s)	573, 709, 882
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	3 cut(s)	51, 228, 720
BfuI	GTATCC	1 cut(s)	158
Bme1390I	CCNGG	4 cut(s)	136, 309, 610, 611
Bme18I	GGWCC	2 cut(s)	559, 644
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	559, 644
BmiI	GGNNCC	6 cut(s)	32, 75, 561, 607, 739, 840
BmrFI	CCNGG	4 cut(s)	136, 309, 610, 611
BmsI	GCATC	3 cut(s)	313, 490, 1015
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	2 cut(s)	450, 1020
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	2 cut(s)	610, 611
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	609, 741
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	4 cut(s)	237, 267, 729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 653
Bse118I	RCCGGY	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	136, 309
BseDI	CCNNGG	2 cut(s)	609, 741
BseGI	GGATG	5 cut(s)	304, 796, 823, 977, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	602, 653
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	6 cut(s)	360, 426, 464, 852, 918, 1011
BseRI	GAGGAG	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	313, 610, 647
BslFI	GGGAC	2 cut(s)	545, 626
BslI	CCNNNNNNNGG	2 cut(s)	602, 653
BsmAI	GTCTC	3 cut(s)	573, 709, 882
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	2 cut(s)	545, 626
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	573
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	3 cut(s)	605, 868, 930
BspACI	CCGC	2 cut(s)	38, 881
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	6 cut(s)	361, 427, 463, 853, 919, 1012
BspLI	GGNNCC	6 cut(s)	32, 75, 561, 607, 739, 840
BspMAI	CTGCAG	3 cut(s)	55, 232, 724
BspPI	GGATC	2 cut(s)	600, 613
BspTNI	GGTCTC	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	609, 741
BssMI	GATC	3 cut(s)	605, 868, 930
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	136, 309
Bst4CI	ACNGT	2 cut(s)	814, 979
Bst6I	CTCTTC	1 cut(s)	900
BstACI	GRCGYC	1 cut(s)	702
BstAPI	GCANNNNNTGC	2 cut(s)	266, 716
BstC8I	GCNNGC	3 cut(s)	522, 544, 724
BstDEI	CTNAG	6 cut(s)	369, 435, 450, 861, 927, 1020
BstF5I	GGATG	5 cut(s)	304, 796, 823, 977, 1030
BstKTI	GATC	3 cut(s)	608, 871, 933
BstMAI	GTCTC	3 cut(s)	573, 709, 882
BstMBI	GATC	3 cut(s)	605, 868, 930
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 266, 716, 791, 917, 1013, 1025
BstNI	CCWGG	2 cut(s)	136, 309
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	4 cut(s)	134, 307, 608, 609
BstSFI	CTRYAG	3 cut(s)	51, 228, 720
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	5 cut(s)	304, 796, 823, 977, 1030
BtsIMutI	CAGTG	2 cut(s)	432, 810
Cac8I	GCNNGC	3 cut(s)	522, 544, 724
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	559, 644
Cfr9I	CCCGGG	1 cut(s)	609
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	590, 975
CviAII	CATG	6 cut(s)	335, 486, 641, 941, 968, 1061
CviQI	GTAC	2 cut(s)	590, 975
DdeI	CTNAG	6 cut(s)	369, 435, 450, 861, 927, 1020
DpnI	GATC	3 cut(s)	607, 870, 932
DpnII	GATC	3 cut(s)	605, 868, 930
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	900
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	900
EciI	GGCGGA	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	573
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	559, 644
Eco53kI	GAGCTC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	134, 307
EcoRV	GATATC	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	6 cut(s)	338, 489, 644, 944, 971, 1064
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	2 cut(s)	545, 626
FatI	CATG	6 cut(s)	334, 485, 640, 940, 967, 1060
FbaI	TGATCA	1 cut(s)	868
FokI	GGATG	5 cut(s)	291, 783, 830, 984, 1037
FriOI	GRGCYC	1 cut(s)	688
FspBI	CTAG	1 cut(s)	674
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	3 cut(s)	313, 610, 647
HgaI	GACGC	1 cut(s)	691
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	6 cut(s)	338, 489, 644, 944, 971, 1064
HinfI	GANTC	4 cut(s)	131, 173, 202, 614
HpaII	CCGG	3 cut(s)	313, 610, 647
HphI	GGTGA	2 cut(s)	378, 779
Hpy166II	GTNNAC	1 cut(s)	1057
Hpy188I	TCNGA	5 cut(s)	277, 436, 873, 928, 997
Hpy188III	TCNNGA	2 cut(s)	77, 892
Hpy8I	GTNNAC	1 cut(s)	1057
HpyAV	CCTTC	4 cut(s)	21, 646, 810, 1006
HpyCH4III	ACNGT	2 cut(s)	814, 979
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 266, 716, 791, 917, 1013, 1025
HpyF3I	CTNAG	6 cut(s)	369, 435, 450, 861, 927, 1020
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	6 cut(s)	338, 489, 644, 944, 971, 1064
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	605, 868, 930
LmnI	GCTCC	6 cut(s)	224, 365, 508, 683, 737, 857
LweI	GCATC	3 cut(s)	313, 490, 1015
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	2 cut(s)	767, 808
MalI	GATC	3 cut(s)	607, 870, 932
MboI	GATC	3 cut(s)	605, 868, 930
MboII	GAAGA	4 cut(s)	338, 674, 917, 958
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	5 cut(s)	103, 119, 398, 407, 444
MlyI	GAGTC	3 cut(s)	140, 211, 608
MmeI	TCCRAC	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	950
MseI	TTAA	7 cut(s)	140, 197, 285, 342, 471, 669, 834
MspA1I	CMGCKG	4 cut(s)	56, 539, 599, 1019
MspI	CCGG	3 cut(s)	313, 610, 647
MspR9I	CCNGG	4 cut(s)	136, 309, 610, 611
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	136, 309
MwoI	GCNNNNNNNGC	7 cut(s)	224, 266, 716, 791, 917, 1013, 1025
NciI	CCSGG	2 cut(s)	610, 611
NdeII	GATC	3 cut(s)	605, 868, 930
NlaIII	CATG	6 cut(s)	338, 489, 644, 944, 971, 1064
NlaIV	GGNNCC	6 cut(s)	32, 75, 561, 607, 739, 840
NmuCI	GTSAC	2 cut(s)	767, 808
NspI	RCATGY	1 cut(s)	489
PciI	ACATGT	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	950
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	602
PleI	GAGTC	3 cut(s)	139, 210, 608
PpsI	GAGTC	3 cut(s)	139, 210, 608
PscI	ACATGT	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	134, 307
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	134, 307
PspN4I	GGNNCC	6 cut(s)	32, 75, 561, 607, 739, 840
PspPI	GGNCC	2 cut(s)	559, 644
PstI	CTGCAG	3 cut(s)	55, 232, 724
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	605
PvuII	CAGCTG	4 cut(s)	56, 539, 599, 1019
RsaI	GTAC	2 cut(s)	591, 976
RsaNI	GTAC	2 cut(s)	590, 975
SacI	GAGCTC	1 cut(s)	688
SaqAI	TTAA	7 cut(s)	140, 197, 285, 342, 471, 669, 834
Sau3AI	GATC	3 cut(s)	605, 868, 930
Sau96I	GGNCC	2 cut(s)	559, 644
SchI	GAGTC	3 cut(s)	140, 211, 608
ScrFI	CCNGG	4 cut(s)	136, 309, 610, 611
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	3 cut(s)	313, 490, 1015
SfcI	CTRYAG	3 cut(s)	51, 228, 720
SinI	GGWCC	2 cut(s)	559, 644
SmaI	CCCGGG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SpeI	ACTAGT	1 cut(s)	673
Sse9I	AATT	5 cut(s)	103, 119, 398, 407, 444
SsiI	CCGC	2 cut(s)	38, 881
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	688
StyD4I	CCNGG	4 cut(s)	134, 307, 608, 609
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	814, 979
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	103, 119, 398, 407, 444
TatI	WGTACW	1 cut(s)	974
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	7 cut(s)	140, 197, 285, 342, 471, 669, 834
Tru9I	TTAA	7 cut(s)	140, 197, 285, 342, 471, 669, 834
TscAI	CASTG	2 cut(s)	432, 817
TseFI	GTSAC	2 cut(s)	767, 808
Tsp45I	GTSAC	2 cut(s)	767, 808
TspDTI	ATGAA	3 cut(s)	17, 338, 339
TspMI	CCCGGG	1 cut(s)	609
TspRI	CASTG	2 cut(s)	432, 817
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	559, 644
XapI	RAATTY	2 cut(s)	103, 444
XceI	RCATGY	1 cut(s)	489
XmaI	CCCGGG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	950
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.