Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000723.1

Orthogroup ID

OG0005633

Physical Location & Seq

Genomic Coordinates Reverse (-)

32103 .. 33733

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000723.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ctggattatgacaacaaaagaatcacaactttcaataacctaatcaacctcctgcaagtgactgagagacataataagattcttttgaataacaatgtcaggcccgttgggacaaagaaaattctcgaggctaattatggcaaagtgaaaggtgggaagaaccccaatgcaatgggggttggacgtgctgatccctacccacatggcaacaatgcaccacgtggaaaggaacatgtgggttgtggtatgggctgtggaggccctcccaatgtatggcgcagaaatggtggtactagccctagtggtcatggaaacaaggtgcaaaaggcacctaagaacccttcggtcaaaaaggaaagagttggcaatgaaccatctataggtatcggagcggatcagagctacaaaatggaagcatcgaggaggctccgggacctgcaatcgcagccgggaaacaagatcaagatctgcatggactgctcacagaagaatccacaatgggcttcagtctcctacggcgtcttcatgtgcctagagtgctccggcaaccaccgccgtctcggcgtccacatctccttcgtcagatctgtgactagttcaaacatttttcagaaattcaatacagaccttagtgatctcggcgctggtgtcttcgtccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

9.99

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37550 AT2G37550
fragaria_vesca	FvH4_6g14160 FvH4_6g14160 FvH4_6g14160
malus_domestica	MD04G1124300.v1.1 MD12G1139600.v1.1
prunus_persica	Prupe.6G251500_v2.0.a1 Prupe.6G251500_v2.0.a1
pyrus_communis	pycom04g11210 pycom12g13410
rosa_chinensis	RchiOBHm_Chr3g0467101
rosa_laevigata	RLG00000007853 RLG00000024526
rosa_multiflora	Rmu_sc0000363.1_g000029 Rmu_sc0000723.1_g000006 Rmu_ssc0000065.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027930 Rroxscaffold_6G00413890
rosa_rugosa	Rorug03G0085500 Rorug06G0179000
rosa_samantha	Rh2BG303700 Rh3AG133500 Rh3BG154700 Rh3CG154400 Rh3DG155500 Rh4CG176600
rosa_wichuraiana	Rw3G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	2 cut(s)	392, 553
AclWI	GGATC	2 cut(s)	185, 402
AcsI	RAATTY	2 cut(s)	120, 614
AcuI	CTGAAG	1 cut(s)	489
AcvI	CACGTG	1 cut(s)	221
AcyI	GRCGYC	2 cut(s)	519, 564
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	273, 380
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	34, 88, 600, 619
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	185
AluBI	AGCT	1 cut(s)	402
AluI	AGCT	1 cut(s)	402
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	3 cut(s)	61, 514, 563
AlwI	GGATC	2 cut(s)	185, 402
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	101, 259
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	2 cut(s)	120, 614
AspLEI	GCGC	2 cut(s)	279, 644
AspS9I	GGNCC	3 cut(s)	102, 260, 433
AsuC2I	CCSGG	2 cut(s)	431, 450
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	514, 643
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	532, 540
BcnI	CCSGG	2 cut(s)	431, 450
BcoDI	GTCTC	3 cut(s)	61, 514, 563
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	4 cut(s)	294, 300, 533, 594
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	561
BglII	AGATCT	2 cut(s)	465, 584
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	2 cut(s)	431, 450
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	102, 260, 433
BmiI	GGNNCC	3 cut(s)	330, 428, 434
BmrFI	CCNGG	2 cut(s)	431, 450
BmsI	GCATC	1 cut(s)	425
BpiI	GAAGAC	2 cut(s)	514, 643
BpuMI	CCSGG	2 cut(s)	431, 450
BsaAI	YACGTR	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	2 cut(s)	519, 564
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 380
Bse3DI	GCAATG	2 cut(s)	177, 373
Bse8I	GATNNNNATC	1 cut(s)	464
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	273, 380
BseMI	GCAATG	2 cut(s)	177, 373
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	103, 261
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	430, 449, 543, 658
BslFI	GGGAC	2 cut(s)	124, 446
BslI	CCNNNNNNNGG	2 cut(s)	273, 380
BsmAI	GTCTC	3 cut(s)	61, 514, 563
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	124, 446
BsnI	GGCC	2 cut(s)	103, 261
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
BspACI	CCGC	2 cut(s)	392, 553
BspANI	GGCC	2 cut(s)	103, 261
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	330, 428, 434
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	185, 402
BspT107I	GGYRCC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	177, 373
BssMI	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
BssNI	GRCGYC	2 cut(s)	519, 564
BstACI	GRCGYC	2 cut(s)	519, 564
BstAPI	GCANNNNNTGC	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	63, 333, 629
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	279, 644
BstKTI	GATC	6 cut(s)	193, 397, 462, 468, 587, 637
BstMAI	GTCTC	3 cut(s)	61, 514, 563
BstMBI	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
BstMWI	GCNNNNNNNGC	6 cut(s)	258, 445, 477, 537, 552, 561
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	429, 448
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	514, 643
BstX2I	RGATCY	2 cut(s)	465, 584
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	465, 584
BsuRI	GGCC	2 cut(s)	103, 261
BtrI	CACGTC	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	279, 644
Cfr13I	GGNCC	3 cut(s)	102, 260, 433
CseI	GACGC	2 cut(s)	508, 553
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	5 cut(s)	203, 233, 308, 472, 526
CviJI	RGCY	9 cut(s)	103, 131, 252, 261, 297, 402, 427, 448, 503
CviKI_1	RGCY	9 cut(s)	103, 131, 252, 261, 297, 402, 427, 448, 503
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	63, 333, 629
DpnI	GATC	6 cut(s)	192, 396, 461, 467, 586, 636
DpnII	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
DraIII	CACNNNGTG	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	260, 433
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	5 cut(s)	206, 236, 311, 475, 529
FaqI	GGGAC	2 cut(s)	124, 446
FatI	CATG	5 cut(s)	202, 232, 307, 471, 525
Fnu4HI	GCNGC	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	4 cut(s)	294, 300, 533, 594
GlaI	GCGC	2 cut(s)	278, 643
GluI	GCNGC	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	103, 261
HapII	CCGG	4 cut(s)	430, 449, 543, 658
HgaI	GACGC	2 cut(s)	508, 553
HhaI	GCGC	2 cut(s)	279, 644
Hin1I	GRCGYC	2 cut(s)	519, 564
Hin1II	CATG	5 cut(s)	206, 236, 311, 475, 529
Hin6I	GCGC	2 cut(s)	277, 642
HinP1I	GCGC	2 cut(s)	277, 642
HinfI	GANTC	3 cut(s)	21, 79, 490
HpaII	CCGG	4 cut(s)	430, 449, 543, 658
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	4 cut(s)	389, 399, 584, 612
Hpy188III	TCNNGA	2 cut(s)	125, 463
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	2 cut(s)	351, 586
HpyCH4IV	ACGT	2 cut(s)	184, 220
HpyCH4V	TGCA	6 cut(s)	55, 170, 215, 322, 439, 471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	258, 445, 477, 537, 552, 561
HpyF3I	CTNAG	3 cut(s)	63, 333, 629
HpySE526I	ACGT	2 cut(s)	184, 220
Hsp92I	GRCGYC	2 cut(s)	519, 564
Hsp92II	CATG	5 cut(s)	206, 236, 311, 475, 529
HspAI	GCGC	2 cut(s)	277, 642
Kzo9I	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
LmnI	GCTCC	3 cut(s)	389, 432, 545
LpnPI	CCDG	7 cut(s)	65, 85, 443, 449, 462, 556, 630
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	4 cut(s)	294, 300, 533, 594
MaeII	ACGT	2 cut(s)	184, 220
MaeIII	GTNAC	2 cut(s)	58, 589
MalI	GATC	6 cut(s)	192, 396, 461, 467, 586, 636
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
MboII	GAAGA	4 cut(s)	169, 499, 514, 643
MflI	RGATCY	2 cut(s)	465, 584
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	3 cut(s)	120, 133, 614
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	59, 121, 251, 273, 414, 417
MspI	CCGG	4 cut(s)	430, 449, 543, 658
MspR9I	CCNGG	2 cut(s)	431, 450
MwoI	GCNNNNNNNGC	6 cut(s)	258, 445, 477, 537, 552, 561
NciI	CCSGG	2 cut(s)	431, 450
NdeII	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
NlaIII	CATG	5 cut(s)	206, 236, 311, 475, 529
NlaIV	GGNNCC	3 cut(s)	330, 428, 434
NmeAIII	GCCGAG	2 cut(s)	540, 618
NmuCI	GTSAC	2 cut(s)	58, 589
NspI	RCATGY	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	21, 79, 490
PflMI	CCANNNNNTGG	1 cut(s)	273
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	447
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	433
PscI	ACATGT	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	433
PspCI	CACGTG	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	330, 428, 434
PspPI	GGNCC	3 cut(s)	102, 260, 433
PspPPI	RGGWCCY	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	465, 584
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	6 cut(s)	190, 394, 459, 465, 584, 634
Sau96I	GGNCC	3 cut(s)	102, 260, 433
ScrFI	CCNGG	2 cut(s)	431, 450
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	3 cut(s)	120, 133, 614
SsiI	CCGC	2 cut(s)	392, 553
SspMI	CTAG	4 cut(s)	294, 300, 533, 594
StyD4I	CCNGG	2 cut(s)	429, 448
TaiI	ACGT	2 cut(s)	187, 223
TaqI	TCGA	2 cut(s)	126, 419
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	3 cut(s)	120, 133, 614
TfiI	GAWTC	3 cut(s)	21, 79, 490
TseFI	GTSAC	2 cut(s)	58, 589
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	58, 589
TspDTI	ATGAA	2 cut(s)	384, 514
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	120, 614
XceI	RCATGY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	4 cut(s)	294, 300, 533, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.