Rh3AG133500

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005633
Physical Location & Seq
Reverse (-)
11547706 .. 11553246
5541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG133500.1

Sequence Viewer

Length: 987 bp
ATGGCGGCATCGAGGCGGCTCCGGGACCTGCAATCGCAGCCGGGAAACAAGATCTGCGTGGATTGCTCGCAGAAGAATCCGCAATGGGCTTCGGTCTCCTACGGCGTCTTCATGTGCCTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCAGATCCGTGACCATGGACTCCTGGTCCGAGATCCAGATCAAGAAGATGGAGGCCGGCGGCAACGAGAGGCTCAACGCCTTCCTCGCCAGCTACGGCGTCTCTAAGGAGACCGATATCGTCACCAAGTACAACACCAACGCTGCCAGCGTCTACCGGGATCGCATTCAAGCCCTGGCCGAGGGTCGGCCTTGGCGGGACCCGCCGGTTGTGAAGGAGAGCGTCGGGGGGTTTGGGAAGACGAAGCCGCCTCTGGCTCACGGCGGAGGAGGTGGCAGGGCAGGCGGTGGCGGAGGCAACAATGGGGGTTGGGATAATTGGGACGACGACGGGTTCAGATCGAACGATATAAGGCGGAATCAGTCCACCGGCGATGTTAGAGGCGTGGGCGGCGGCGGAGGGATGCCGGCGAGGTCGAGATCGACAGAGGACATCATGCGATCGCAATTCGAGGCTTCCGCGGCGAACAAGGAGAGCTTCTTCGCCAGGAAGATGGCGGAGAATGAGTCCAGGCCGGACGGACTCCCACCGTCGCAAGGCGGCAAGTATGTTGGGTTCGGGTCAAGCCCGGCACCTTCTCAGAATAGTTATAATAACAATTCGCAAGCAGATGTGTTATCTGTTGTTTCTCAGGGTTTTGGTAGGCTATCTTTGGTTGCTGCATCTGCAGCTCAATCAGCTGCAACTGTAGTACAGGCAGGCACAAAAGAGATCACCTCTAAGGTACTTTGCTATAACTCTTTATTGTGCTCGATATTAGATGATCATTCTGCCAGTGGTTTTATTTGTCTAATTCAAAATGATTCAACCACCATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

328

Amino Acids

34.87

Weight (kDa)

8.8

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 5 - 110 2.1e-35 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 318
AccII CGCG 2 cut(s) 141, 626
AclWI GGATC 3 cut(s) 165, 193, 333
AcoI YGGCCR 1 cut(s) 342
AcyI GRCGYC 3 cut(s) 105, 150, 264
AfaI GTAC 3 cut(s) 296, 858, 891
AfiI CCNNNNNNNGG 3 cut(s) 346, 351, 701
AgsI TTSAA 3 cut(s) 335, 962, 972
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 4 cut(s) 188, 339, 650, 674
AluBI AGCT 4 cut(s) 258, 642, 836, 845
AluI AGCT 4 cut(s) 258, 642, 836, 845
Alw21I GWGCWC 2 cut(s) 128, 917
Alw26I GTCTC 3 cut(s) 100, 269, 271
AlwI GGATC 3 cut(s) 165, 193, 333
AoxI GGCC 5 cut(s) 142, 219, 342, 353, 677
ApeKI GCWGC 5 cut(s) 37, 308, 824, 833, 845
AsiSI GCGATCGC 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 25, 192, 364
AsuC2I CCSGG 4 cut(s) 23, 42, 323, 734
AsuHPI GGTGA 2 cut(s) 280, 871
AvaII GGWCC 3 cut(s) 25, 192, 364
BanI GGYRCC 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 100, 410
Bbv12I GWGCWC 2 cut(s) 128, 917
BbvI GCAGC 5 cut(s) 49, 295, 811, 832, 845
BccI CCATC 2 cut(s) 208, 652
BceAI ACGGC 3 cut(s) 118, 277, 442
BciT130I CCWGG 4 cut(s) 190, 341, 652, 676
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 4 cut(s) 23, 42, 323, 734
BcoDI GTCTC 3 cut(s) 100, 269, 271
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 831, 852
BfuAI ACCTGC 1 cut(s) 36
BglII AGATCT 1 cut(s) 51
Bme1390I CCNGG 8 cut(s) 23, 42, 190, 323, 341, 652, 676, 734
Bme18I GGWCC 3 cut(s) 25, 192, 364
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 25, 192, 364
BmiI GGNNCC 5 cut(s) 20, 26, 365, 366, 738
BmrFI CCNGG 8 cut(s) 23, 42, 190, 323, 341, 652, 676, 734
BmsI GCATC 3 cut(s) 17, 558, 836
BpiI GAAGAC 2 cut(s) 100, 410
BplI GAGNNNNNCTC 2 cut(s) 866, 898
BpuMI CCSGG 4 cut(s) 23, 42, 323, 734
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 3 cut(s) 105, 150, 264
BsaI GGTCTC 2 cut(s) 100, 269
BsaJI CCNNGG 7 cut(s) 139, 145, 180, 339, 345, 356, 624
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 351, 701
Bse118I RCCGGY 4 cut(s) 221, 370, 533, 571
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 4 cut(s) 190, 341, 652, 676
BseDI CCNNGG 7 cut(s) 139, 145, 180, 339, 345, 356, 624
BseGI GGATG 1 cut(s) 573
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 3 cut(s) 346, 351, 701
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 758, 809
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 5 cut(s) 49, 295, 811, 832, 845
Bsh1236I CGCG 2 cut(s) 141, 626
Bsh1285I CGRYCG 1 cut(s) 608
BshFI GGCC 5 cut(s) 144, 221, 344, 355, 679
BshNI GGYRCC 1 cut(s) 736
BsiEI CGRYCG 1 cut(s) 608
BsiHKAI GWGCWC 2 cut(s) 128, 917
BslFI GGGAC 3 cut(s) 38, 377, 500
BslI CCNNNNNNNGG 3 cut(s) 346, 351, 701
BsmAI GTCTC 3 cut(s) 100, 269, 271
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 3 cut(s) 38, 377, 500
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 5 cut(s) 144, 221, 344, 355, 679
Bso31I GGTCTC 2 cut(s) 100, 269
Bsp1286I GDGCHC 2 cut(s) 128, 917
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 5 cut(s) 144, 221, 344, 355, 679
BspCNI CTCAG 2 cut(s) 757, 808
BspFNI CGCG 2 cut(s) 141, 626
BspLI GGNNCC 5 cut(s) 20, 26, 365, 366, 738
BspMAI CTGCAG 1 cut(s) 835
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 165, 193, 333
BspT107I GGYRCC 1 cut(s) 736
BspTNI GGTCTC 2 cut(s) 100, 269
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 4 cut(s) 221, 370, 533, 571
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 4 cut(s) 221, 370, 533, 571
BssECI CCNNGG 7 cut(s) 139, 145, 180, 339, 345, 356, 624
BssNI GRCGYC 3 cut(s) 105, 150, 264
BssT1I CCWWGG 2 cut(s) 180, 356
Bst2UI CCWGG 4 cut(s) 190, 341, 652, 676
Bst4CI ACNGT 2 cut(s) 696, 853
BstACI GRCGYC 3 cut(s) 105, 150, 264
BstC8I GCNNGC 9 cut(s) 68, 134, 223, 256, 313, 448, 573, 771, 865
BstDEI CTNAG 4 cut(s) 270, 744, 795, 885
BstDSI CCRYGG 3 cut(s) 139, 180, 624
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 2 cut(s) 141, 626
BstMAI GTCTC 3 cut(s) 100, 269, 271
BstMCI CGRYCG 1 cut(s) 608
BstNI CCWGG 4 cut(s) 190, 341, 652, 676
BstSCI CCNGG 8 cut(s) 21, 40, 188, 321, 339, 650, 674, 732
BstSFI CTRYAG 2 cut(s) 831, 852
BstUI CGCG 2 cut(s) 141, 626
BstV1I GCAGC 5 cut(s) 49, 295, 811, 832, 845
BstV2I GAAGAC 2 cut(s) 100, 410
BstX2I RGATCY 3 cut(s) 51, 170, 198
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 3 cut(s) 51, 170, 198
BsuRI GGCC 5 cut(s) 144, 221, 344, 355, 679
BtgI CCRYGG 3 cut(s) 139, 180, 624
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 946, 982
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 9 cut(s) 68, 134, 223, 256, 313, 448, 573, 771, 865
Cfr10I RCCGGY 4 cut(s) 221, 370, 533, 571
Cfr13I GGNCC 3 cut(s) 25, 192, 364
Cfr42I CCGCGG 2 cut(s) 142, 627
CseI GACGC 5 cut(s) 94, 139, 253, 304, 376
Csp6I GTAC 3 cut(s) 295, 857, 890
CviAII CATG 4 cut(s) 112, 181, 601, 979
CviQI GTAC 3 cut(s) 295, 857, 890
DdeI CTNAG 4 cut(s) 270, 744, 795, 885
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 190
EciI GGCGGA 5 cut(s) 444, 471, 535, 576, 677
Eco130I CCWWGG 2 cut(s) 180, 356
Eco31I GGTCTC 2 cut(s) 100, 269
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 25, 192, 364
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 2 cut(s) 25, 364
EcoRII CCWGG 4 cut(s) 188, 339, 650, 674
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 180, 356
ErhI CCWWGG 2 cut(s) 180, 356
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 4 cut(s) 115, 184, 604, 982
FaiI YATR 8 cut(s) 113, 182, 515, 602, 714, 756, 900, 980
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 3 cut(s) 38, 377, 500
FatI CATG 4 cut(s) 111, 180, 600, 978
FauI CCCGC 2 cut(s) 354, 375
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 318
FokI GGATG 1 cut(s) 580
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 5 cut(s) 144, 221, 344, 355, 679
HgaI GACGC 5 cut(s) 94, 139, 253, 304, 376
Hin1I GRCGYC 3 cut(s) 105, 150, 264
Hin1II CATG 4 cut(s) 115, 184, 604, 982
HinfI GANTC 6 cut(s) 76, 185, 523, 671, 687, 968
HphI GGTGA 2 cut(s) 280, 871
Hpy166II GTNNAC 3 cut(s) 154, 319, 531
Hpy188I TCNGA 4 cut(s) 170, 196, 503, 747
Hpy188III TCNNGA 3 cut(s) 202, 208, 582
Hpy8I GTNNAC 3 cut(s) 154, 319, 531
Hpy99I CGWCG 4 cut(s) 392, 494, 497, 700
HpyAV CCTTC 4 cut(s) 172, 256, 373, 750
HpyCH4III ACNGT 2 cut(s) 696, 853
HpyCH4V TGCA 5 cut(s) 31, 827, 833, 848, 982
HpyF3I CTNAG 4 cut(s) 270, 744, 795, 885
Hsp92I GRCGYC 3 cut(s) 105, 150, 264
Hsp92II CATG 4 cut(s) 115, 184, 604, 982
KflI GGGWCCC 1 cut(s) 364
KroI GCCGGC 2 cut(s) 221, 571
KroNI GCCGGC 2 cut(s) 223, 573
Ksp22I TGATCA 1 cut(s) 928
KspI CCGCGG 2 cut(s) 142, 627
LmnI GCTCC 2 cut(s) 24, 131
Lsp1109I GCAGC 5 cut(s) 49, 295, 811, 832, 845
LweI GCATC 3 cut(s) 17, 558, 836
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 175, 286
MboII GAAGA 6 cut(s) 85, 100, 223, 415, 637, 667
MflI RGATCY 3 cut(s) 51, 170, 198
MhlI GDGCHC 2 cut(s) 128, 917
MluCI AATT 4 cut(s) 481, 611, 763, 957
MlyI GAGTC 3 cut(s) 179, 680, 681
MroNI GCCGGC 2 cut(s) 221, 571
MspA1I CMGCKG 3 cut(s) 141, 626, 845
MspR9I CCNGG 8 cut(s) 23, 42, 190, 323, 341, 652, 676, 734
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 4 cut(s) 190, 341, 652, 676
MvnI CGCG 2 cut(s) 141, 626
NaeI GCCGGC 2 cut(s) 223, 573
NciI CCSGG 4 cut(s) 23, 42, 323, 734
NcoI CCATGG 1 cut(s) 180
NgoMIV GCCGGC 2 cut(s) 221, 571
NlaIII CATG 4 cut(s) 115, 184, 604, 982
NlaIV GGNNCC 5 cut(s) 20, 26, 365, 366, 738
NmeAIII GCCGAG 2 cut(s) 126, 370
NmuCI GTSAC 2 cut(s) 175, 286
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 312
PctI GAATGC 1 cut(s) 330
PdiI GCCGGC 2 cut(s) 223, 573
PfeI GAWTC 3 cut(s) 76, 523, 968
PfoI TCCNGGA 1 cut(s) 21
Ple19I CGATCG 1 cut(s) 608
PleI GAGTC 3 cut(s) 179, 679, 681
PpsI GAGTC 3 cut(s) 179, 679, 681
PpuMI RGGWCCY 2 cut(s) 25, 364
PsiI TTATAA 1 cut(s) 756
Psp5II RGGWCCY 2 cut(s) 25, 364
Psp6I CCWGG 4 cut(s) 188, 339, 650, 674
PspGI CCWGG 4 cut(s) 188, 339, 650, 674
PspN4I GGNNCC 5 cut(s) 20, 26, 365, 366, 738
PspPI GGNCC 3 cut(s) 25, 192, 364
PspPPI RGGWCCY 2 cut(s) 25, 364
PsrI GAACNNNNNNTAC 2 cut(s) 704, 736
PstI CTGCAG 1 cut(s) 835
PsuI RGATCY 3 cut(s) 51, 170, 198
PvuI CGATCG 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 845
RgaI GCGATCGC 1 cut(s) 608
RsaI GTAC 3 cut(s) 296, 858, 891
RsaNI GTAC 3 cut(s) 295, 857, 890
SacII CCGCGG 2 cut(s) 142, 627
Sau96I GGNCC 3 cut(s) 25, 192, 364
SchI GAGTC 3 cut(s) 179, 680, 681
ScrFI CCNGG 8 cut(s) 23, 42, 190, 323, 341, 652, 676, 734
SduI GDGCHC 2 cut(s) 128, 917
SfaAI GCGATCGC 1 cut(s) 608
SfaNI GCATC 3 cut(s) 17, 558, 836
SfcI CTRYAG 2 cut(s) 831, 852
Sfr303I CCGCGG 2 cut(s) 142, 627
SgfI GCGATCGC 1 cut(s) 608
SgrAI CRCCGGYG 1 cut(s) 533
SgrBI CCGCGG 2 cut(s) 142, 627
SinI GGWCC 3 cut(s) 25, 192, 364
Sse9I AATT 4 cut(s) 481, 611, 763, 957
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 8 cut(s) 21, 40, 188, 321, 339, 650, 674, 732
StyI CCWWGG 2 cut(s) 180, 356
TaaI ACNGT 2 cut(s) 696, 853
TaqI TCGA 6 cut(s) 11, 506, 581, 587, 615, 917
TaqII GACCGA 2 cut(s) 82, 293
TasI AATT 4 cut(s) 481, 611, 763, 957
TatI WGTACW 2 cut(s) 294, 856
TauI GCSGC 9 cut(s) 8, 19, 144, 228, 415, 558, 561, 629, 708
TfiI GAWTC 3 cut(s) 76, 523, 968
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 2 cut(s) 175, 286
TseI GCWGC 5 cut(s) 37, 308, 824, 833, 845
Tsp45I GTSAC 2 cut(s) 175, 286
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 2 cut(s) 163, 699
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 3 cut(s) 25, 192, 364
XagI CCTNNNNNAGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.