Rh2BG303700

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005633
Physical Location & Seq
Forward (+)
35196446 .. 35196733
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG303700.1

Sequence Viewer

Length: 288 bp
ATGTGCCTAGAGTGCCCCGGCAAGCACCGCGGCTTCGGAGTCCACATCTCCTTTGTCAAATCCATGACCATGGACTCCTGGTCCGAGATCCAGATCAAGAAGATGGAGGCCGGCGGCAACGAGAGGCTCAGCGCCTTCCTCGCCAGCTACGGCGTCTCTAAGAAGACCGATATCGTCACCAAGTACAACACCAACGCTGCCAGCAGCCCGTCCCCTGGGTTTTGCGCCACGGCGGCTCCACGGAGAGGGACGGCGAGGATAACGTGTGGCGGTGGCCGGCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

95

Amino Acids

10.09

Weight (kDa)

9.64

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 1 - 57 1.3e-16 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 5 cut(s) 28, 30, 114, 233, 270
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 215, 245
AflIII ACRYGT 1 cut(s) 263
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 77, 214
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 82
AoxI GGCC 2 cut(s) 108, 274
ApeKI GCWGC 2 cut(s) 197, 204
AspLEI GCGC 2 cut(s) 134, 227
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 184, 216
BccI CCATC 1 cut(s) 97
BceAI ACGGC 3 cut(s) 166, 246, 267
BciT130I CCWGG 2 cut(s) 79, 216
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 5 cut(s) 31, 115, 198, 205, 234
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 5 cut(s) 32, 116, 199, 206, 235
Bme1390I CCNGG 3 cut(s) 18, 79, 216
Bme18I GGWCC 1 cut(s) 81
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 3 cut(s) 18, 79, 216
BpiI GAAGAC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 7 cut(s) 16, 28, 69, 214, 215, 228, 239
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 245
Bse118I RCCGGY 2 cut(s) 110, 276
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 2 cut(s) 79, 216
BseDI CCNNGG 7 cut(s) 16, 28, 69, 214, 215, 228, 239
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 215, 245
BseMII CTCAG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 184, 216
BseYI CCCAGC 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 110, 276
BsiSI CCGG 3 cut(s) 18, 111, 277
BslFI GGGAC 2 cut(s) 196, 262
BslI CCNNNNNNNGG 2 cut(s) 215, 245
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 196, 262
BsnI GGCC 2 cut(s) 110, 276
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 87, 93
Bsp1720I GCTNAGC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 28, 30, 114, 233, 270
BspANI GGCC 2 cut(s) 110, 276
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 82
BsrFI RCCGGY 2 cut(s) 110, 276
BssAI RCCGGY 2 cut(s) 110, 276
BssECI CCNNGG 7 cut(s) 16, 28, 69, 214, 215, 228, 239
BssMI GATC 2 cut(s) 87, 93
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 79, 216
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 5 cut(s) 23, 112, 145, 202, 278
BstDEI CTNAG 2 cut(s) 128, 159
BstDSI CCRYGG 4 cut(s) 28, 69, 228, 239
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 227
BstKTI GATC 2 cut(s) 90, 96
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 87, 93
BstMWI GCNNNNNNNGC 4 cut(s) 12, 27, 140, 233
BstNI CCWGG 2 cut(s) 79, 216
BstSCI CCNGG 3 cut(s) 16, 77, 214
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 184, 216
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 2 cut(s) 110, 276
BtgI CCRYGG 4 cut(s) 28, 69, 228, 239
Cac8I GCNNGC 5 cut(s) 23, 112, 145, 202, 278
CfoI GCGC 2 cut(s) 134, 227
Cfr10I RCCGGY 2 cut(s) 110, 276
Cfr13I GGNCC 1 cut(s) 81
Cfr42I CCGCGG 1 cut(s) 31
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 64, 70
CviJI RGCY 8 cut(s) 33, 110, 127, 147, 207, 236, 276, 280
CviKI_1 RGCY 8 cut(s) 33, 110, 127, 147, 207, 236, 276, 280
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 128, 159
DpnI GATC 2 cut(s) 89, 95
DpnII GATC 2 cut(s) 87, 93
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 69
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 77, 214
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 67, 73
FaiI YATR 2 cut(s) 65, 71
FaqI GGGAC 2 cut(s) 196, 262
FatI CATG 2 cut(s) 63, 69
Fnu4HI GCNGC 5 cut(s) 31, 115, 198, 205, 234
Fsp4HI GCNGC 5 cut(s) 31, 115, 198, 205, 234
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 133, 226
GluI GCNGC 5 cut(s) 31, 115, 198, 205, 234
GsaI CCCAGC 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 110, 276
HapII CCGG 3 cut(s) 18, 111, 277
HgaI GACGC 1 cut(s) 142
HhaI GCGC 2 cut(s) 134, 227
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 67, 73
Hin6I GCGC 2 cut(s) 132, 225
HinP1I GCGC 2 cut(s) 132, 225
HinfI GANTC 2 cut(s) 39, 74
HpaII CCGG 3 cut(s) 18, 111, 277
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 38, 85
Hpy188III TCNNGA 2 cut(s) 91, 97
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 27, 140, 233
HpyF3I CTNAG 2 cut(s) 128, 159
HpySE526I ACGT 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 67, 73
HspAI GCGC 2 cut(s) 132, 225
KroI GCCGGC 2 cut(s) 110, 276
KroNI GCCGGC 2 cut(s) 112, 278
KspI CCGCGG 1 cut(s) 31
Kzo9I GATC 2 cut(s) 87, 93
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 184, 216
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 175
MalI GATC 2 cut(s) 89, 95
MboI GATC 2 cut(s) 87, 93
MboII GAAGA 2 cut(s) 112, 175
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 17
MlyI GAGTC 2 cut(s) 48, 68
MnlI CCTC 5 cut(s) 100, 117, 149, 239, 249
MroNI GCCGGC 2 cut(s) 110, 276
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 3 cut(s) 18, 111, 277
MspR9I CCNGG 3 cut(s) 18, 79, 216
MvaI CCWGG 2 cut(s) 79, 216
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 4 cut(s) 12, 27, 140, 233
NaeI GCCGGC 2 cut(s) 112, 278
NciI CCSGG 1 cut(s) 18
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 87, 93
NgoMIV GCCGGC 2 cut(s) 110, 276
NlaIII CATG 2 cut(s) 67, 73
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 175
PasI CCCWGGG 1 cut(s) 215
PdiI GCCGGC 2 cut(s) 112, 278
PkrI GCNGC 5 cut(s) 32, 116, 199, 206, 235
PleI GAGTC 2 cut(s) 47, 68
PpsI GAGTC 2 cut(s) 47, 68
Psp6I CCWGG 2 cut(s) 77, 214
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 2 cut(s) 77, 214
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 68
SacII CCGCGG 1 cut(s) 31
SatI GCNGC 5 cut(s) 31, 115, 198, 205, 234
Sau3AI GATC 2 cut(s) 87, 93
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 48, 68
ScrFI CCNGG 3 cut(s) 18, 79, 216
SduI GDGCHC 1 cut(s) 17
SetI ASST 2 cut(s) 149, 266
Sfr303I CCGCGG 1 cut(s) 31
SgrBI CCGCGG 1 cut(s) 31
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 68
SsiI CCGC 5 cut(s) 28, 30, 114, 233, 270
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 16, 77, 214
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 266
TaqII GACCGA 1 cut(s) 182
TatI WGTACW 1 cut(s) 183
TauI GCSGC 3 cut(s) 33, 117, 236
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 197, 204
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 81
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.