Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005633

Physical Location & Seq

Genomic Coordinates Forward (+)

35606440 .. 35606709

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCCACATCGAGGAGGCTACGAGACCTGCAATCGCAGCCGGGAAACAAGATCTGCGTGGACTGCTCGCGAAGAATCCGCAATAGGCTTCGGTCTCCTACCAGTGCTCCAAAGCAAGCACCGCGCCTCGGCATCCACATCTCCTTCATCGGATCCGTGACCATGGACTCCCGGTCCGAGATCCGCATTAAGAAGATGGAGGCCAGCGGCAACGAGAGGCTCAACGCCTTCCTCGCCGCCTACGGCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

83

Amino Acids

9.29

Weight (kDa)

11.36

Isoelectric Point (pI)

85.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37550 AT2G37550
fragaria_vesca	FvH4_6g14160 FvH4_6g14160 FvH4_6g14160
malus_domestica	MD04G1124300.v1.1 MD12G1139600.v1.1
prunus_persica	Prupe.6G251500_v2.0.a1 Prupe.6G251500_v2.0.a1
pyrus_communis	pycom04g11210 pycom12g13410
rosa_chinensis	RchiOBHm_Chr3g0467101
rosa_laevigata	RLG00000007853 RLG00000024526
rosa_multiflora	Rmu_sc0000363.1_g000029 Rmu_sc0000723.1_g000006 Rmu_ssc0000065.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027930 Rroxscaffold_6G00413890
rosa_rugosa	Rorug03G0085500 Rorug06G0179000
rosa_samantha	Rh2BG303700 Rh3AG133500 Rh3BG154700 Rh3CG154400 Rh3DG155500 Rh4CG176600
rosa_wichuraiana	Rw3G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	2 cut(s)	70, 124
AciI	CCGC	5 cut(s)	79, 122, 184, 207, 237
AclWI	GGATC	3 cut(s)	147, 160, 175
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	12, 128
AhdI	GACNNNNNGTC	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	18, 99
AlwI	GGATC	3 cut(s)	147, 160, 175
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	42, 172
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	190
BcnI	CCSGG	2 cut(s)	42, 172
BcoDI	GTCTC	2 cut(s)	18, 99
BfuAI	ACCTGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	3 cut(s)	38, 208, 237
BlsI	GCNGC	3 cut(s)	39, 209, 238
Bme1390I	CCNGG	2 cut(s)	42, 172
Bme18I	GGWCC	1 cut(s)	174
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	42, 172
BmsI	GCATC	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	42, 172
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	18, 99
BsaJI	CCNNGG	2 cut(s)	127, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 128
Bse1I	ACTGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	127, 162
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	12, 128
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	70, 124
BshFI	GGCC	2 cut(s)	5, 203
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	41, 172
BslI	CCNNNNNNNGG	2 cut(s)	12, 128
BsmAI	GTCTC	2 cut(s)	18, 99
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	2 cut(s)	18, 99
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	51, 152, 180
Bsp19I	CCATGG	1 cut(s)	162
Bsp68I	TCGCGA	1 cut(s)	70
BspACI	CCGC	5 cut(s)	79, 122, 184, 207, 237
BspANI	GGCC	2 cut(s)	5, 203
BspFNI	CGCG	2 cut(s)	70, 124
BspLI	GGNNCC	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	147, 160, 175
BspTNI	GGTCTC	2 cut(s)	18, 99
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	127, 162
BssMI	GATC	3 cut(s)	51, 152, 180
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	68, 117, 205
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	70, 124
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	54, 155, 183
BstMAI	GTCTC	2 cut(s)	18, 99
BstMBI	GATC	3 cut(s)	51, 152, 180
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 63, 121, 233
BstSCI	CCNGG	2 cut(s)	40, 170
BstUI	CGCG	2 cut(s)	70, 124
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	3 cut(s)	51, 152, 180
BstYI	RGATCY	3 cut(s)	51, 152, 180
BsuRI	GGCC	2 cut(s)	5, 203
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	109
BtuMI	TCGCGA	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	68, 117, 205
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	174
CpoI	CGGWCCG	1 cut(s)	174
CseI	GACGC	1 cut(s)	235
CspI	CGGWCCG	1 cut(s)	174
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	5, 19, 40, 88, 203, 220
CviKI_1	RGCY	6 cut(s)	5, 19, 40, 88, 203, 220
DpnI	GATC	3 cut(s)	53, 154, 182
DpnII	GATC	3 cut(s)	51, 152, 180
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	2 cut(s)	18, 99
Eco47I	GGWCC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	38, 208, 237
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	38, 208, 237
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	38, 208, 237
HaeIII	GGCC	2 cut(s)	5, 203
HapII	CCGG	2 cut(s)	41, 172
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	75, 167
HpaII	CCGG	2 cut(s)	41, 172
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	152, 178
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	154, 238
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 63, 121, 233
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	51, 152, 180
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	41, 54, 115, 185, 217
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	53, 154, 182
MboI	GATC	3 cut(s)	51, 152, 180
MboII	GAAGA	2 cut(s)	84, 205
MflI	RGATCY	3 cut(s)	51, 152, 180
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	6 cut(s)	6, 9, 137, 193, 210, 242
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	2 cut(s)	41, 172
MspR9I	CCNGG	2 cut(s)	42, 172
MvnI	CGCG	2 cut(s)	70, 124
MwoI	GCNNNNNNNGC	4 cut(s)	37, 63, 121, 233
NciI	CCSGG	2 cut(s)	42, 172
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	51, 152, 180
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	39, 209, 238
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	3 cut(s)	51, 152, 180
RruI	TCGCGA	1 cut(s)	70
Rsr2I	CGGWCCG	1 cut(s)	174
RsrII	CGGWCCG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	38, 208, 237
Sau3AI	GATC	3 cut(s)	51, 152, 180
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	42, 172
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	174
SsiI	CCGC	5 cut(s)	79, 122, 184, 207, 237
StyD4I	CCNGG	2 cut(s)	40, 170
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	81
TauI	GCSGC	2 cut(s)	210, 239
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.