Rh4CG176600

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005633
Physical Location & Seq
Reverse (-)
38474497 .. 38474745
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG176600.1

Sequence Viewer

Length: 249 bp
ATGGCGGCATCGAGAAGGCTCCGGGACCTACAATCGCAGCAGGGAAACAAGATCTGCGTGGACTGCTTGCAGAAGAATCCGCAATGGGCTTCGGTCTCCTACAGCGTCTTCATGTGCCTAGAGTGCTCCGGCAACCATCGCGGCCTCGGCGTCCACATCTCCTTCGTCAGATCGGTGACCAGTTCAAACATTTTTCAGAAATTCAATACAGACCTCAGTGATCTCGACGCTGGTGTCTTCGTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

82

Amino Acids

9.17

Weight (kDa)

8.88

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 5 - 64 7e-24 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 5, 80, 141
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 150
AgsI TTSAA 2 cut(s) 186, 205
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 100
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 100, 229
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 100
BglII AGATCT 1 cut(s) 51
BisI GCNGC 3 cut(s) 6, 38, 142
BlsI GCNGC 3 cut(s) 7, 39, 143
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 20, 26
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 100, 229
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 3 cut(s) 22, 129, 244
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 51, 170, 220
BspACI CCGC 3 cut(s) 5, 80, 141
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 20, 26
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 51, 170, 220
BssNI GRCGYC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 215
BstEII GGTNACC 1 cut(s) 175
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 54, 173, 223
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 51, 170, 220
BstMWI GCNNNNNNNGC 4 cut(s) 63, 123, 138, 147
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 2 cut(s) 100, 229
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 3 cut(s) 94, 139, 236
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 19, 89, 144
CviKI_1 RGCY 3 cut(s) 19, 89, 144
DdeI CTNAG 1 cut(s) 215
DpnI GATC 3 cut(s) 53, 172, 222
DpnII GATC 3 cut(s) 51, 170, 220
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 25
Eco91I GGTNACC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 175
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 6, 38, 142
Fsp4HI GCNGC 3 cut(s) 6, 38, 142
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 6, 38, 142
HaeIII GGCC 1 cut(s) 144
HapII CCGG 3 cut(s) 22, 129, 244
HgaI GACGC 3 cut(s) 94, 139, 236
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 76
HpaII CCGG 3 cut(s) 22, 129, 244
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 61, 154
Hpy188I TCNGA 2 cut(s) 170, 198
Hpy188III TCNNGA 2 cut(s) 12, 224
Hpy8I GTNNAC 2 cut(s) 61, 154
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 9, 172
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 123, 138, 147
HpyF3I CTNAG 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 3 cut(s) 51, 170, 220
LmnI GCTCC 2 cut(s) 24, 131
LpnPI CCDG 5 cut(s) 26, 35, 142, 193, 216
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 175
MalI GATC 3 cut(s) 53, 172, 222
MboI GATC 3 cut(s) 51, 170, 220
MboII GAAGA 3 cut(s) 85, 100, 229
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 200
MnlI CCTC 2 cut(s) 155, 224
MspI CCGG 3 cut(s) 22, 129, 244
MspR9I CCNGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 63, 123, 138, 147
NciI CCSGG 1 cut(s) 23
NdeII GATC 3 cut(s) 51, 170, 220
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 20, 26
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 7, 39, 143
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 20, 26
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PsuI RGATCY 1 cut(s) 51
SatI GCNGC 3 cut(s) 6, 38, 142
Sau3AI GATC 3 cut(s) 51, 170, 220
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 128
SetI ASST 2 cut(s) 30, 216
SfaNI GCATC 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 25
Sse9I AATT 1 cut(s) 200
SsiI CCGC 3 cut(s) 5, 80, 141
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 21
TaqI TCGA 2 cut(s) 11, 225
TaqII GACCGA 1 cut(s) 82
TasI AATT 1 cut(s) 200
TauI GCSGC 2 cut(s) 8, 144
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 100
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.