Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000409.1

Orthogroup ID

OG0015718

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4801

Gene Structure 4801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 569 bp

ttcccaacattgacttggttctcgaggacgtcggcccctatctcatcaacgatggtggaaacatcgacgttgtgtccttcgaagacgacgtcgtttatctcaagctccaagatggtcatggatttacatgccctttcttttccttgctggtgaccaagcagagcagtggagattttggggctaatgtgaagcgccttgaagtggaaactgaggaaaatatcaatcacctctcaacagagggctcaaggatattaggtgatgttgtccagatgcttctaaagcatgtgacaacagcaacatctgaaactggttcacctgcggatgaaactgaatttgagaagttagaagagaaagccttcaatttgagaaagctccgcatggcatctgccgagtcatctgtcgagccatcacacaacagttataacacatacccattgcctgtttgtttatcagacaactgtgttccaccattgtctgaattttcaacagacaatggctcgctctacaatggtggcactccaaatcagacaacagtttctgtctgtcgtctggtaaggattttggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

188

Amino Acids

20.54

Weight (kDa)

4.48

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	4 - 45	2.7e-07	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015718)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g15650
rosa_chinensis	RchiOBHm_Chr2g0124801 RchiOBHm_Chr2g0133051
rosa_laevigata	RLG00000007734 RLG00000013906 RLG00000018210 RLG00000019634 RLG00000030079 RLG00000036894
rosa_multiflora	Rmu_sc0000409.1_g000001 Rmu_sc0001929.1_g000002
rosa_rugosa	Rorug07G0325000
rosa_samantha	Rh2CG331800 Rh6DG454600 Rh7AG293900
rosa_wichuraiana	Rw1G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AarI	CACCTGC	1 cut(s)	324
AatII	GACGTC	2 cut(s)	32, 92
Acc36I	ACCTGC	1 cut(s)	324
AciI	CCGC	2 cut(s)	319, 375
AcsI	RAATTY	2 cut(s)	331, 478
AcyI	GRCGYC	2 cut(s)	29, 89
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	199, 360, 485
AhdI	GACNNNNNGTC	1 cut(s)	72
AluBI	AGCT	2 cut(s)	105, 372
AluI	AGCT	2 cut(s)	105, 372
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	331, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	162, 217, 268, 305
AsuII	TTCGAA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	89
BccI	CCATC	3 cut(s)	46, 106, 414
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	2 cut(s)	260, 391
BpiI	GAAGAC	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	85, 228
BsaHI	GRCGYC	2 cut(s)	29, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	201
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	319, 375
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	324
BspT104I	TTCGAA	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	312
BssNI	GRCGYC	2 cut(s)	29, 89
Bst4CI	ACNGT	3 cut(s)	418, 460, 534
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	29, 89
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNSI	RCATGY	2 cut(s)	131, 286
BstPI	GGTNACC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	4 cut(s)	118, 128, 283, 378
CviJI	RGCY	8 cut(s)	35, 105, 181, 242, 355, 372, 405, 497
CviKI_1	RGCY	8 cut(s)	35, 105, 181, 242, 355, 372, 405, 497
DdeI	CTNAG	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	150
EcoO65I	GGTNACC	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	4 cut(s)	121, 131, 286, 381
FaiI	YATR	7 cut(s)	119, 129, 284, 379, 422, 429, 567
FatI	CATG	4 cut(s)	117, 127, 282, 377
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	244
GlaI	GCGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	2 cut(s)	29, 89
Hin1II	CATG	4 cut(s)	121, 131, 286, 381
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	4 cut(s)	162, 217, 268, 305
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	303, 453, 477, 527
Hpy188III	TCNNGA	2 cut(s)	22, 267
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	4 cut(s)	34, 70, 91, 94
HpyAV	CCTTC	2 cut(s)	87, 366
HpyCH4III	ACNGT	3 cut(s)	418, 460, 534
HpyCH4IV	ACGT	3 cut(s)	29, 68, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	3 cut(s)	29, 68, 89
Hsp92I	GRCGYC	2 cut(s)	29, 89
Hsp92II	CATG	4 cut(s)	121, 131, 286, 381
HspAI	GCGC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	110, 377
LpnPI	CCDG	6 cut(s)	133, 280, 293, 329, 452, 535
LweI	GCATC	2 cut(s)	260, 391
MaeII	ACGT	3 cut(s)	29, 68, 89
MaeIII	GTNAC	2 cut(s)	150, 285
MboII	GAAGA	2 cut(s)	94, 358
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	331, 360, 478
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	18, 204, 231, 238
MroXI	GAANNNNTTC	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	279
NlaIII	CATG	4 cut(s)	121, 131, 286, 381
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	150, 285
NspI	RCATGY	2 cut(s)	131, 286
NspV	TTCGAA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	355
PflFI	GACNNNGTC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	32, 71, 92, 107, 230, 258, 318, 374
SfaNI	GCATC	2 cut(s)	260, 391
Sfr274I	CTCGAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	3 cut(s)	22, 100, 243
SmoI	CTYRAG	3 cut(s)	22, 100, 243
Sse9I	AATT	3 cut(s)	331, 360, 478
SsiI	CCGC	2 cut(s)	319, 375
TaaI	ACNGT	3 cut(s)	418, 460, 534
TaiI	ACGT	3 cut(s)	32, 71, 92
TaqI	TCGA	4 cut(s)	23, 65, 80, 401
TasI	AATT	3 cut(s)	331, 360, 478
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	150, 285
Tsp45I	GTSAC	2 cut(s)	150, 285
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	331, 478
XceI	RCATGY	2 cut(s)	131, 286
XcmI	CCANNNNNNNNNTGG	2 cut(s)	12, 115
XhoI	CTCGAG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	355
ZraI	GACGTC	2 cut(s)	30, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.