Rmu_sc0000425.1_g000002

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000425.1
OG0011991
Physical Location & Seq
Forward (+)
27243 .. 30483
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
atgggcatctatctatccagaaatatagcaaatttcattttctcctctcccctcttctccaagaaaaatggtggtattcccattcccatgcagttggagaacatggtctccttggtttcccggaccggaaggcatttgcagcgctacgataaaggctgccgccaagttgtaggatgcataccctatagatataggcaaacaaaacaggaatctttatctacggaggaaatagaagttcttgtgattagctcacaaaatggtaaaggaatgttgttcccaaagggaggttgggaacttgatgagtccattgaagaagcggcttacagagaaacgctagaggaggctggtgtgactggccatcttgagcctaaattgggcaaatggcgttacaagagcaaaagccagggcacttttcatgaggggtacatgttccctttgcttgtcaacaagcagttcgagtcttggcctgagaagactgtcaggaaacgagaatgggtgactcttgctgaagctaaagaagcatgccaaaattggtggatgaaggaagctttggatgaatttgctcggcgacaaacgcagcaccaaaagaaagaagaacaagatgagcctgagccccaatccattctagcaaatcatagaaagcccaacaaagattgtgggtcgcagtccaaaaccaaactccacccggatcccagatccgtctccatttcccaaacccacctagatcctgatcctgatgccaatgatctggacagcagcgccgtcagacacttccctatgacctgcaatggaggagactgccaaactgctatggccatcgccgaccaacaaatcgccgccgatgaagtcccaacgagccaacaccacctctcggccatgccaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

295

Amino Acids

33.54

Weight (kDa)

6.38

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 78 - 186 5.3e-13 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 791
AciI CCGC 3 cut(s) 160, 317, 837
AclWI GGATC 5 cut(s) 683, 690, 696, 719, 725
AcoI YGGCCR 3 cut(s) 355, 813, 873
AcsI RAATTY 2 cut(s) 31, 557
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 1 cut(s) 425
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 284, 374, 871
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 249, 512, 548
AluI AGCT 3 cut(s) 249, 512, 548
Alw26I GTCTC 3 cut(s) 112, 706, 789
AlwI GGATC 5 cut(s) 683, 690, 696, 719, 725
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 4 cut(s) 355, 464, 813, 873
ApeKI GCWGC 4 cut(s) 139, 156, 577, 756
ApoI RAATTY 2 cut(s) 31, 557
AspLEI GCGC 2 cut(s) 144, 761
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 2 cut(s) 121, 686
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 410
BalI TGGCCA 2 cut(s) 357, 815
BamHI GGATCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 479
BbvI GCAGC 4 cut(s) 143, 151, 589, 768
BccI CCATC 2 cut(s) 366, 824
BceAI ACGGC 1 cut(s) 746
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 2 cut(s) 121, 686
BcoDI GTCTC 3 cut(s) 112, 706, 789
BfaI CTAG 3 cut(s) 335, 626, 722
BfmI CTRYAG 1 cut(s) 184
BfoI RGCGCY 2 cut(s) 145, 762
BfuAI ACCTGC 1 cut(s) 791
BisI GCNGC 7 cut(s) 140, 157, 160, 318, 578, 757, 837
BlsI GCNGC 7 cut(s) 141, 158, 161, 319, 579, 758, 838
Bme1390I CCNGG 3 cut(s) 121, 404, 686
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 121, 404, 686
BmsI GCATC 3 cut(s) 15, 164, 727
BpiI GAAGAC 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 121, 686
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 111, 403
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 374, 871
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 793
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 111, 403
BseGI GGATG 3 cut(s) 179, 543, 559
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 3 cut(s) 284, 374, 871
BseMI GCAATG 1 cut(s) 793
BseMII CTCAG 2 cut(s) 459, 600
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 3 cut(s) 34, 353, 807
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 4 cut(s) 143, 151, 589, 768
BshFI GGCC 4 cut(s) 357, 466, 815, 875
BsiSI CCGG 3 cut(s) 121, 126, 686
BslFI GGGAC 1 cut(s) 833
BslI CCNNNNNNNGG 3 cut(s) 284, 374, 871
BsmAI GTCTC 3 cut(s) 112, 706, 789
BsmBI CGTCTC 1 cut(s) 706
BsmFI GGGAC 1 cut(s) 833
BsnI GGCC 4 cut(s) 357, 466, 815, 875
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 410, 615
Bsp143I GATC 5 cut(s) 688, 695, 724, 730, 745
BspACI CCGC 3 cut(s) 160, 317, 837
BspANI GGCC 4 cut(s) 357, 466, 815, 875
BspCNI CTCAG 2 cut(s) 460, 601
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 690
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 5 cut(s) 683, 690, 696, 719, 725
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 793
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 111, 403
BssMI GATC 5 cut(s) 688, 695, 724, 730, 745
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 468, 609
BstF5I GGATG 3 cut(s) 179, 543, 559
BstH2I RGCGCY 2 cut(s) 145, 762
BstHHI GCGC 2 cut(s) 144, 761
BstKTI GATC 5 cut(s) 691, 698, 727, 733, 748
BstMAI GTCTC 3 cut(s) 112, 706, 789
BstMBI GATC 5 cut(s) 688, 695, 724, 730, 745
BstMWI GCNNNNNNNGC 3 cut(s) 139, 518, 574
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 2 cut(s) 430, 525
BstSCI CCNGG 3 cut(s) 119, 402, 684
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 4 cut(s) 143, 151, 589, 768
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 3 cut(s) 688, 695, 724
BstXI CCANNNNNNTGG 2 cut(s) 94, 748
BstYI RGATCY 3 cut(s) 688, 695, 724
BsuRI GGCC 4 cut(s) 357, 466, 815, 875
BtgZI GCGATG 1 cut(s) 802
BtsCI GGATG 3 cut(s) 179, 543, 559
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 1 cut(s) 523
CciI TCATGA 1 cut(s) 415
CfoI GCGC 2 cut(s) 144, 761
Cfr13I GGNCC 1 cut(s) 123
CpoI CGGWCCG 1 cut(s) 123
Csp6I GTAC 1 cut(s) 424
CspCI CAANNNNNGTGG 4 cut(s) 515, 550, 637, 672
CspI CGGWCCG 1 cut(s) 123
CviAII CATG 6 cut(s) 88, 103, 416, 427, 522, 877
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 468, 609
DpnI GATC 5 cut(s) 690, 697, 726, 732, 747
DpnII GATC 5 cut(s) 688, 695, 724, 730, 745
EaeI YGGCCR 3 cut(s) 355, 813, 873
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 706
FaeI CATG 6 cut(s) 91, 106, 419, 430, 525, 880
FaqI GGGAC 1 cut(s) 833
FatI CATG 6 cut(s) 87, 102, 415, 426, 521, 876
Fnu4HI GCNGC 7 cut(s) 140, 157, 160, 318, 578, 757, 837
FokI GGATG 3 cut(s) 186, 550, 566
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 7 cut(s) 140, 157, 160, 318, 578, 757, 837
FspBI CTAG 3 cut(s) 335, 626, 722
GlaI GCGC 2 cut(s) 143, 760
GluI GCNGC 7 cut(s) 140, 157, 160, 318, 578, 757, 837
HaeII RGCGCY 2 cut(s) 145, 762
HaeIII GGCC 4 cut(s) 357, 466, 815, 875
HapII CCGG 3 cut(s) 121, 126, 686
HhaI GCGC 2 cut(s) 144, 761
Hin1II CATG 6 cut(s) 91, 106, 419, 430, 525, 880
Hin6I GCGC 2 cut(s) 142, 759
HinP1I GCGC 2 cut(s) 142, 759
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 4 cut(s) 209, 302, 458, 499
HpaII CCGG 3 cut(s) 121, 126, 686
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 767
Hpy188III TCNNGA 7 cut(s) 18, 362, 416, 481, 728, 734, 749
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 123, 535
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 91, 139, 177, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 518, 574
HpyF3I CTNAG 2 cut(s) 468, 609
Hsp92II CATG 6 cut(s) 91, 106, 419, 430, 525, 880
HspAI GCGC 2 cut(s) 142, 759
Kzo9I GATC 5 cut(s) 688, 695, 724, 730, 745
Lsp1109I GCAGC 4 cut(s) 143, 151, 589, 768
LweI GCATC 3 cut(s) 15, 164, 727
MaeI CTAG 3 cut(s) 335, 626, 722
MaeIII GTNAC 3 cut(s) 349, 386, 496
MalI GATC 5 cut(s) 690, 697, 726, 732, 747
MboI GATC 5 cut(s) 688, 695, 724, 730, 745
MboII GAAGA 4 cut(s) 46, 323, 484, 605
MflI RGATCY 3 cut(s) 688, 695, 724
MhlI GDGCHC 2 cut(s) 410, 615
MlsI TGGCCA 2 cut(s) 357, 815
MluCI AATT 4 cut(s) 31, 371, 529, 557
MluNI TGGCCA 2 cut(s) 357, 815
MlyI GAGTC 3 cut(s) 311, 467, 493
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 9 cut(s) 55, 62, 217, 278, 331, 334, 412, 785, 878
Mox20I TGGCCA 2 cut(s) 357, 815
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 2 cut(s) 357, 815
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 2 cut(s) 357, 815
MspI CCGG 3 cut(s) 121, 126, 686
MspR9I CCNGG 3 cut(s) 121, 404, 686
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 139, 518, 574
NciI CCSGG 2 cut(s) 121, 686
NdeII GATC 5 cut(s) 688, 695, 724, 730, 745
NlaIII CATG 6 cut(s) 91, 106, 419, 430, 525, 880
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 2 cut(s) 544, 851
NmuCI GTSAC 2 cut(s) 349, 496
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 2 cut(s) 430, 525
PaeI GCATGC 1 cut(s) 525
PagI TCATGA 1 cut(s) 415
PciI ACATGT 1 cut(s) 426
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 7 cut(s) 141, 158, 161, 319, 579, 758, 838
PleI GAGTC 3 cut(s) 310, 466, 493
PpsI GAGTC 3 cut(s) 310, 466, 493
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 3 cut(s) 688, 695, 724
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 86
Rsr2I CGGWCCG 1 cut(s) 123
RsrII CGGWCCG 1 cut(s) 123
SatI GCNGC 7 cut(s) 140, 157, 160, 318, 578, 757, 837
Sau3AI GATC 5 cut(s) 688, 695, 724, 730, 745
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 3 cut(s) 311, 467, 493
ScrFI CCNGG 3 cut(s) 121, 404, 686
SduI GDGCHC 2 cut(s) 410, 615
SetI ASST 7 cut(s) 251, 289, 514, 550, 723, 785, 870
SfaNI GCATC 3 cut(s) 15, 164, 727
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 525
Sse9I AATT 4 cut(s) 31, 371, 529, 557
SsiI CCGC 3 cut(s) 160, 317, 837
SspMI CTAG 3 cut(s) 335, 626, 722
StyD4I CCNGG 3 cut(s) 119, 402, 684
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 31, 371, 529, 557
TauI GCSGC 3 cut(s) 162, 320, 839
TfiI GAWTC 1 cut(s) 209
TseFI GTSAC 2 cut(s) 349, 496
TseI GCWGC 4 cut(s) 139, 156, 577, 756
Tsp45I GTSAC 2 cut(s) 349, 496
TspDTI ATGAA 5 cut(s) 25, 404, 554, 570, 858
TspGWI ACGGA 2 cut(s) 236, 688
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 2 cut(s) 31, 557
XceI RCATGY 2 cut(s) 430, 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 3 cut(s) 335, 626, 722
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.