Rmu_sc0000488.1_g000027

Solute carrier family 40 member 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000488.1
OG0011217
Physical Location & Seq
Reverse (-)
135375 .. 137330
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
atggctttggcttttggttcaacggttactctctctcagtattctctcaatttcaattcctctagatttcgccatcggattgcttctcgccagtggttgaatttgaaccatgtttctgttggttctcatagatttattaatgcaaggtgttcaatgaccaacactgatgtacacttcaaccatgtggctactgaaaatgagacgcaagatgaatcatcagacatagggattgagtgttcggtcccagttgttcatctcacacctgatatccttgagactgaatctttgagtttattaactgaagacacttatgtggatagtctattgataacactgcctgttttgtcaaaagaggagcagcacacccttgcagctactccggcccatccaatgggattatatgctttatatgctagttgtctagctggaaatgtggtggaacaattttggaatttcgcttggccctctgctattgcattaatatatccaagccttttgccagtggccctcattggttttgttagtaagcttgcaataattgctggaggtcctatagtgggtacacttatggatcatttccccagagtgcctgcgtataactgtctgaatattatccaggcagctgctcagttattatctgcaacaatgataattcgtgctcattcagttcccccttctgcatcgtccctccttctccgtccctggttcattgtacttgtattgagtggagctgtagagaggctatctggtgtagcattaggagttgctgcagagcgtgattgggtggtgcagttggcaggagtgaacaggcctattgcactcgcagaagcaaatgccattcttagtcgaattgacctactctgtgaggtatttgctatccttatcttttccttcaaatgtatttcagcgttgtattatatgttcattgagtaa

Protein Analysis

310

Amino Acids

33.85

Weight (kDa)

5.65

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 133 - 298 6.6e-48 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26820
fragaria_vesca FvH4_6g07510 FvH4_6g07510
malus_domestica MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica Prupe.6G312300_v2.0.a1
pyrus_communis pycom04g17030 pycom12g19300
rosa_chinensis RchiOBHm_Chr3g0457221
rosa_laevigata RLG00000025242
rosa_multiflora Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii Rroxscaffold_6G00422100
rosa_rugosa Rorug03G0019400
rosa_samantha Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana Rw3G006830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 2 cut(s) 100, 451
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 3 cut(s) 171, 562, 714
AfiI CCNNNNNNNGG 2 cut(s) 391, 557
AgsI TTSAA 7 cut(s) 21, 55, 100, 106, 153, 178, 895
AjnI CCWGG 2 cut(s) 615, 701
AleI CACNNNNGTG 1 cut(s) 311
AloI GAACNNNNNNTCC 2 cut(s) 220, 252
AluBI AGCT 5 cut(s) 374, 425, 529, 623, 731
AluI AGCT 5 cut(s) 374, 425, 529, 623, 731
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 194, 269
AlwI GGATC 1 cut(s) 579
AoxI GGCC 4 cut(s) 381, 461, 504, 809
ApeKI GCWGC 5 cut(s) 358, 371, 620, 623, 767
ApoI RAATTY 2 cut(s) 100, 451
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AseI ATTAAT 2 cut(s) 138, 479
AspS9I GGNCC 5 cut(s) 241, 382, 462, 505, 548
AvaII GGWCC 2 cut(s) 241, 548
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 5 cut(s) 370, 383, 610, 632, 754
BccI CCATC 2 cut(s) 81, 393
BciT130I CCWGG 2 cut(s) 617, 703
BcoDI GTCTC 2 cut(s) 194, 269
BfaI CTAG 3 cut(s) 63, 414, 422
BfmI CTRYAG 3 cut(s) 552, 732, 768
BisI GCNGC 5 cut(s) 359, 372, 621, 624, 768
BlsI GCNGC 5 cut(s) 360, 373, 622, 625, 769
Bme1390I CCNGG 2 cut(s) 617, 703
Bme18I GGWCC 2 cut(s) 241, 548
BmgT120I GGNCC 5 cut(s) 241, 382, 462, 505, 548
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 617, 703
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 701
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 557
Bse1I ACTGG 3 cut(s) 91, 245, 500
BseBI CCWGG 2 cut(s) 617, 703
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 391, 557
BseMII CTCAG 2 cut(s) 50, 641
BseNI ACTGG 3 cut(s) 91, 245, 500
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 5 cut(s) 370, 383, 610, 632, 754
BsgI GTGCAG 1 cut(s) 809
BshFI GGCC 4 cut(s) 383, 463, 506, 811
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 3 cut(s) 227, 670, 684
BslI CCNNNNNNNGG 2 cut(s) 391, 557
BsmAI GTCTC 2 cut(s) 194, 269
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 3 cut(s) 227, 670, 684
BsnI GGCC 4 cut(s) 383, 463, 506, 811
Bsp1286I GDGCHC 1 cut(s) 661
Bsp1407I TGTACA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 571
BspANI GGCC 4 cut(s) 383, 463, 506, 811
BspCNI CTCAG 2 cut(s) 49, 640
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 169
BsrI ACTGG 3 cut(s) 91, 245, 500
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 617, 703
Bst4CI ACNGT 2 cut(s) 25, 602
BstAPI GCANNNNNTGC 1 cut(s) 539
BstAUI TGTACA 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 531, 591
BstDEI CTNAG 3 cut(s) 36, 627, 842
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 574
BstMAI GTCTC 2 cut(s) 194, 269
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 3 cut(s) 380, 410, 539
BstNI CCWGG 2 cut(s) 617, 703
BstSCI CCNGG 2 cut(s) 615, 701
BstSFI CTRYAG 3 cut(s) 552, 732, 768
BstV1I GCAGC 5 cut(s) 370, 383, 610, 632, 754
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 4 cut(s) 383, 463, 506, 811
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 4 cut(s) 98, 162, 332, 507
Cac8I GCNNGC 2 cut(s) 531, 591
Cfr13I GGNCC 5 cut(s) 241, 382, 462, 505, 548
CseI GACGC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 170, 561, 713
CviAII CATG 2 cut(s) 110, 182
CviQI GTAC 3 cut(s) 170, 561, 713
DdeI CTNAG 3 cut(s) 36, 627, 842
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 811
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 241, 548
Eco57I CTGAAG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 615, 701
EcoRV GATATC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 2 cut(s) 113, 185
FaqI GGGAC 3 cut(s) 227, 670, 684
FatI CATG 2 cut(s) 109, 181
Fnu4HI GCNGC 5 cut(s) 359, 372, 621, 624, 768
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 5 cut(s) 359, 372, 621, 624, 768
FspBI CTAG 3 cut(s) 63, 414, 422
GluI GCNGC 5 cut(s) 359, 372, 621, 624, 768
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 4 cut(s) 383, 463, 506, 811
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 113, 185
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 2 cut(s) 212, 281
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 3 cut(s) 172, 563, 805
Hpy188I TCNGA 3 cut(s) 78, 220, 606
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 3 cut(s) 172, 563, 805
HpyAV CCTTC 3 cut(s) 684, 701, 901
HpyCH4III ACNGT 2 cut(s) 25, 602
HpyCH4V TGCA 9 cut(s) 143, 371, 476, 533, 641, 680, 770, 790, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 410, 539
HpyF3I CTNAG 3 cut(s) 36, 627, 842
Hsp92II CATG 2 cut(s) 113, 185
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 2 cut(s) 355, 728
Lsp1109I GCAGC 5 cut(s) 370, 383, 610, 632, 754
LweI GCATC 1 cut(s) 689
MaeI CTAG 3 cut(s) 63, 414, 422
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 573
MboI GATC 1 cut(s) 571
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 8 cut(s) 49, 55, 100, 443, 451, 537, 651, 849
MnlI CCTC 8 cut(s) 70, 346, 475, 518, 539, 698, 732, 859
MseI TTAA 3 cut(s) 138, 296, 479
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 617, 703
MvaI CCWGG 2 cut(s) 617, 703
MwoI GCNNNNNNNGC 3 cut(s) 380, 410, 539
NdeII GATC 1 cut(s) 571
NlaIII CATG 2 cut(s) 113, 185
NlaIV GGNNCC 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 311
PceI AGGCCT 1 cut(s) 811
PfeI GAWTC 2 cut(s) 212, 281
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 5 cut(s) 360, 373, 622, 625, 769
PpuMI RGGWCCY 1 cut(s) 548
PshBI ATTAAT 2 cut(s) 138, 479
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 615, 701
PspGI CCWGG 2 cut(s) 615, 701
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 5 cut(s) 241, 382, 462, 505, 548
PspPPI RGGWCCY 1 cut(s) 548
PsrI GAACNNNNNNTAC 1 cut(s) 905
PstI CTGCAG 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 3 cut(s) 171, 562, 714
RsaNI GTAC 3 cut(s) 170, 561, 713
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 138, 296, 479
SatI GCNGC 5 cut(s) 359, 372, 621, 624, 768
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 5 cut(s) 241, 382, 462, 505, 548
ScrFI CCNGG 2 cut(s) 617, 703
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 3 cut(s) 552, 732, 768
SinI GGWCC 2 cut(s) 241, 548
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 8 cut(s) 49, 55, 100, 443, 451, 537, 651, 849
SseBI AGGCCT 1 cut(s) 811
SspI AATATT 1 cut(s) 610
SspMI CTAG 3 cut(s) 63, 414, 422
StuI AGGCCT 1 cut(s) 811
StyD4I CCNGG 2 cut(s) 615, 701
TaaI ACNGT 2 cut(s) 25, 602
TaqI TCGA 1 cut(s) 847
TaqII GACCGA 1 cut(s) 229
TasI AATT 8 cut(s) 49, 55, 100, 443, 451, 537, 651, 849
TatI WGTACW 2 cut(s) 169, 712
TfiI GAWTC 2 cut(s) 212, 281
Tru1I TTAA 3 cut(s) 138, 296, 479
Tru9I TTAA 3 cut(s) 138, 296, 479
TscAI CASTG 4 cut(s) 98, 169, 339, 507
TseI GCWGC 5 cut(s) 358, 371, 620, 623, 767
TspDTI ATGAA 4 cut(s) 225, 242, 697, 913
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 4 cut(s) 98, 169, 339, 507
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 241, 548
VspI ATTAAT 2 cut(s) 138, 479
XapI RAATTY 2 cut(s) 100, 451
XbaI TCTAGA 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 3 cut(s) 63, 414, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.