Rmu_sc0000534.1_g000007

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000534.1
OG0015929
Physical Location & Seq
Reverse (-)
28290 .. 29621
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1332 bp
atgaaaagctttcaagcgaaacaacaagtgccggaccatgtccgagatcgaattctcaataataatggaaaatctcttggatcatgtcccaatgtgagagtttacagtcaacagcgtcctcattatcttcttcccaagaagatcataagtaagttcaaccctcccaagcagcaccaacaacagcagcaacgatatcattatcctccttcgaatccttctaaattaaatgcaggaatctcgtcgagtttgtcttgctatgtttgcaaaaagagcttcccatcatcacaattcttgtacagccacatgatgagattgcatcccgaaagaggcttgaagggtgtgttgctgccgcaacaagctccgatgatgaagtctgttatcctttctcaatctcagtcatcgaatgaaagaggcaagaagggtgtgttgccgccacaacaagctccgatgatgaagtctgtcatcccttctcaatctctggcatcgaatgaaagaggcatgaagggtgcgttgccgccgcaacaagctccgatgatgaagtctgtcatccctactcaatctctgtcatcgaatgaaagaggcatgaagggtgtgttgccgccgcaacaagctctgatgatgaagtctgtcatcccttctcaatctgtgtcatcgaatgaaagaggcatgaagggtgtgttacagccgcgagctccgatcagtccgatcaagtctgtagttccttctcgatttggatcttcttctgcatcggagttatcagatgtcaaagagccagattgtgatccagtgaagctcttattaagctggggcaagaaagatcggagaggcaggactaataatccttgtccttgtgcttgtaatgctgcaattgctagcctacaaaaacctaatgaaactacggaggccactaaaagtagtagtagcattcctagaagtactaggaatactctaattgctaaccaacaaaatcctaaaccaagcagtagtacaagtacaactgataatgagattagtttgattgatactaagatgatgaagatgacgaagaaacacaaatgcagtatttgccacaaggagtttgacactggtcaggcactcggagggcacaagtcaagtagtgcttgcagggcagtgagagaaaccaaactaatagtttcagcagttcatgaacatgctcctcaagtagtagtgtccaccacgaagaagacgatggatgacattgaagagggtgagattatagaagacggagagattacagatgaagaaggaagtcagcggataagtcataaaatgtttaattttgatctcaatgaacttccttcagaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

443

Amino Acids

48.81

Weight (kDa)

9.64

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 351 - 372 3.4e-08 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26940 AT5G56200
fragaria_vesca FvH4_5g31390
malus_domestica MD03G1110900.v1.1 MD11G1124800.v1.1
prunus_persica Prupe.6G093500_v2.0.a1
rosa_laevigata RLG00000001711
rosa_multiflora Rmu_sc0000534.1_g000007
rosa_rugosa Rorug07G0239000
rosa_samantha Rh7AG386400 Rh7BG373000 Rh7CG405700 Rh7DG385100
rosa_wichuraiana Rw0G018440 Rw7G032440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 688
AciI CCGC 8 cut(s) 350, 431, 515, 518, 599, 602, 686, 1276
AclWI GGATC 3 cut(s) 88, 742, 776
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 1305
AfaI GTAC 4 cut(s) 296, 937, 988, 994
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 14, 157, 334, 1223
AluBI AGCT 9 cut(s) 9, 273, 359, 443, 527, 611, 692, 793, 804
AluI AGCT 9 cut(s) 9, 273, 359, 443, 527, 611, 692, 793, 804
Alw21I GWGCWC 1 cut(s) 694
AlwI GGATC 3 cut(s) 88, 742, 776
AoxI GGCC 1 cut(s) 903
ApeKI GCWGC 4 cut(s) 169, 184, 346, 863
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 1241
AsuII TTCGAA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 872
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 1107
BanII GRGCYC 1 cut(s) 694
BbsI GAAGAC 2 cut(s) 1211, 1248
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 4 cut(s) 181, 196, 333, 850
BccI CCATC 2 cut(s) 286, 1204
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 3 cut(s) 873, 930, 939
BfmI CTRYAG 1 cut(s) 714
BmcAI AGTACT 1 cut(s) 937
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 3 cut(s) 325, 491, 755
BmtI GCTAGC 1 cut(s) 876
BoxI GACNNNNGTC 1 cut(s) 1086
BpiI GAAGAC 2 cut(s) 1211, 1248
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1164
BsaBI GATNNNNATC 2 cut(s) 733, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 785, 1090
Bse8I GATNNNNATC 2 cut(s) 733, 780
BseGI GGATG 5 cut(s) 316, 462, 546, 630, 1219
BseJI GATNNNNATC 2 cut(s) 733, 780
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 2 cut(s) 785, 1090
BseRI GAGGAG 1 cut(s) 1167
BseSI GKGCMC 1 cut(s) 1107
BseXI GCAGC 4 cut(s) 181, 196, 333, 850
BseYI CCCAGC 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 905
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 694, 1107
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
BspACI CCGC 8 cut(s) 350, 431, 515, 518, 599, 602, 686, 1276
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 1165
BspOI GCTAGC 1 cut(s) 876
BspPI GGATC 3 cut(s) 88, 742, 776
BspT104I TTCGAA 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 2 cut(s) 785, 1090
BssMI GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 1218
BstAPI GCANNNNNTGC 1 cut(s) 1065
BstAUI TGTACA 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 690, 874, 1123
BstDEI CTNAG 2 cut(s) 393, 1026
BstF5I GGATG 5 cut(s) 316, 462, 546, 630, 1219
BstFNI CGCG 1 cut(s) 688
BstKTI GATC 9 cut(s) 49, 83, 144, 699, 708, 737, 784, 820, 1306
BstMBI GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
BstMWI GCNNNNNNNGC 6 cut(s) 261, 270, 860, 869, 1065, 1127
BstNSI RCATGY 1 cut(s) 1175
BstPAI GACNNNNGTC 1 cut(s) 1086
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 1 cut(s) 1107
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 4 cut(s) 181, 196, 333, 850
BstV2I GAAGAC 2 cut(s) 1211, 1248
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BsuRI GGCC 1 cut(s) 905
BtsCI GGATG 5 cut(s) 316, 462, 546, 630, 1219
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 3 cut(s) 792, 1083, 1137
Cac8I GCNNGC 3 cut(s) 690, 874, 1123
CciI TCATGA 1 cut(s) 1165
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 295, 936, 987, 993
CviAII CATG 8 cut(s) 38, 84, 304, 499, 583, 667, 1166, 1172
CviQI GTAC 4 cut(s) 295, 936, 987, 993
DdeI CTNAG 2 cut(s) 393, 1026
DpnI GATC 9 cut(s) 48, 82, 143, 698, 707, 736, 783, 819, 1305
DpnII GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
Eam1104I CTCTTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1218
Ecl136II GAGCTC 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 694
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 1305
EcoICRI GAGCTC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 694
FaeI CATG 8 cut(s) 41, 87, 307, 502, 586, 670, 1169, 1175
FalI AAGNNNNNCTT 2 cut(s) 1105, 1137
FaqI GGGAC 1 cut(s) 72
FatI CATG 8 cut(s) 37, 83, 303, 498, 582, 666, 1165, 1171
FokI GGATG 5 cut(s) 303, 449, 533, 617, 1226
FriOI GRGCYC 1 cut(s) 694
FspBI CTAG 3 cut(s) 873, 930, 939
GsaI CCCAGC 1 cut(s) 808
HaeIII GGCC 1 cut(s) 905
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 41, 87, 307, 502, 586, 670, 1169, 1175
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 211, 234
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 1241
Hpy166II GTNNAC 3 cut(s) 103, 110, 1194
Hpy188III TCNNGA 3 cut(s) 320, 726, 1166
Hpy8I GTNNAC 3 cut(s) 103, 110, 1194
Hpy99I CGWCG 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 7 cut(s) 230, 264, 316, 746, 866, 1059, 1125
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 270, 860, 869, 1065, 1127
HpyF3I CTNAG 2 cut(s) 393, 1026
Hsp92II CATG 8 cut(s) 41, 87, 307, 502, 586, 670, 1169, 1175
Kzo9I GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
LmnI GCTCC 5 cut(s) 364, 448, 532, 697, 1180
Lsp1109I GCAGC 4 cut(s) 181, 196, 333, 850
LweI GCATC 3 cut(s) 325, 491, 755
MaeI CTAG 3 cut(s) 873, 930, 939
MaeIII GTNAC 1 cut(s) 678
MalI GATC 9 cut(s) 48, 82, 143, 698, 707, 736, 783, 819, 1305
MboI GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 1 cut(s) 734
MhlI GDGCHC 2 cut(s) 694, 1107
MluCI AATT 6 cut(s) 51, 221, 287, 867, 951, 1297
MseI TTAA 3 cut(s) 224, 800, 1296
MslI CAYNNNNRTG 1 cut(s) 1170
MspA1I CMGCKG 1 cut(s) 1276
MspI CCGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 867
Mva1269I GAATGC 1 cut(s) 924
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 6 cut(s) 261, 270, 860, 869, 1065, 1127
NdeII GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
NheI GCTAGC 1 cut(s) 872
NlaIII CATG 8 cut(s) 41, 87, 307, 502, 586, 670, 1169, 1175
NspI RCATGY 1 cut(s) 1175
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 1165
PcsI WCGNNNNNNNCGW 1 cut(s) 1205
PctI GAATGC 1 cut(s) 924
PfeI GAWTC 2 cut(s) 211, 234
PflFI GACNNNGTC 1 cut(s) 38
PshAI GACNNNNGTC 1 cut(s) 1086
Psp124BI GAGCTC 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 804
PspPI GGNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 734
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 4 cut(s) 296, 937, 988, 994
RsaNI GTAC 4 cut(s) 295, 936, 987, 993
RseI CAYNNNNRTG 1 cut(s) 1170
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 3 cut(s) 224, 800, 1296
Sau3AI GATC 9 cut(s) 46, 80, 141, 696, 705, 734, 781, 817, 1303
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 937
SduI GDGCHC 2 cut(s) 694, 1107
SfaNI GCATC 3 cut(s) 325, 491, 755
SfcI CTRYAG 1 cut(s) 714
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 1 cut(s) 1179
SmoI CTYRAG 1 cut(s) 1179
Sse9I AATT 6 cut(s) 51, 221, 287, 867, 951, 1297
SsiI CCGC 8 cut(s) 350, 431, 515, 518, 599, 602, 686, 1276
SspMI CTAG 3 cut(s) 873, 930, 939
SstI GAGCTC 1 cut(s) 694
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 8 cut(s) 49, 209, 242, 401, 485, 569, 653, 727
TasI AATT 6 cut(s) 51, 221, 287, 867, 951, 1297
TatI WGTACW 4 cut(s) 294, 935, 986, 992
TauI GCSGC 7 cut(s) 352, 433, 517, 520, 601, 604, 688
TfiI GAWTC 2 cut(s) 211, 234
Tru1I TTAA 3 cut(s) 224, 800, 1296
Tru9I TTAA 3 cut(s) 224, 800, 1296
TscAI CASTG 3 cut(s) 792, 1090, 1137
TseI GCWGC 4 cut(s) 169, 184, 346, 863
TspGWI ACGGA 2 cut(s) 914, 1260
TspRI CASTG 3 cut(s) 792, 1090, 1137
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 1175
XspI CTAG 3 cut(s) 873, 930, 939
ZrmI AGTACT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.