Rmu_sc0000560.1_g000018

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000560.1
OG0017464
Physical Location & Seq
Reverse (-)
105321 .. 106888
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
atgagggaaaactttcttcaatataaccccttcaaccctacggagttcaaaggaaatctagatctgcagggattgccgattcgtcgtcgttttggagaaaccgtgctgtattcagttcgagtacatggtgtactacgagagccgcatcaccggaaagctgagctacggcgcgatcctaatctgaagggcattcaggtacaaagattgttcttttggttcgtcgtggatgagatcagggtcgatttgccgccggccgatagtatttacttcaccgttgggatcatcaacaaaagctcgatgtcgatcagttccagaatgttcgttcttgctgggacgggctttcgggtacggggatggccgattcgtcgtccttttggagaaaccgtgctgtattcagttcgagtacatggtgtactacgagagccgcatcaccggaaagctgagctacggcgcgatcctaatctgaagggcattcaggtacaaagattgttcttttggttcgtcgtggatgagatcagggtcgatttgccgccggccgatagtatttacttcactgttgggatcatcaacaaaagctcgatgtcgatcagttccagaatgttcgttcttgctgggacgggctttcgggtacgggtacgggttcagtttctttcctcgggtcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

221

Amino Acids

25.74

Weight (kDa)

11.19

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 60 - 98 1.3e-06 Protein of unknown function, DUF538
DUF538 PF04398 154 - 192 1.5e-06 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 171, 453
AciI CCGC 4 cut(s) 143, 248, 425, 530
AclWI GGATC 4 cut(s) 167, 287, 449, 569
AcoI YGGCCR 3 cut(s) 252, 356, 534
AcuI CTGAAG 2 cut(s) 203, 485
AfaI GTAC 9 cut(s) 123, 132, 198, 348, 405, 414, 480, 630, 636
AgsI TTSAA 3 cut(s) 20, 34, 49
AluBI AGCT 6 cut(s) 158, 163, 294, 440, 445, 576
AluI AGCT 6 cut(s) 158, 163, 294, 440, 445, 576
AlwI GGATC 4 cut(s) 167, 287, 449, 569
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 3 cut(s) 252, 356, 534
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 2 cut(s) 171, 453
AsuHPI GGTGA 3 cut(s) 140, 262, 422
AvaI CYCGRG 1 cut(s) 655
BccI CCATC 1 cut(s) 348
BceAI ACGGC 2 cut(s) 182, 464
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 61
BisI GCNGC 4 cut(s) 143, 248, 425, 530
BlpI GCTNAGC 2 cut(s) 159, 441
BlsI GCNGC 4 cut(s) 144, 249, 426, 531
BmeT110I CYCGRG 1 cut(s) 655
BmsI GCATC 2 cut(s) 154, 436
Bpu1102I GCTNAGC 2 cut(s) 159, 441
BsaBI GATNNNNATC 4 cut(s) 177, 302, 459, 584
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 2 cut(s) 150, 432
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 369, 399
Bse118I RCCGGY 2 cut(s) 250, 532
Bse8I GATNNNNATC 4 cut(s) 177, 302, 459, 584
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 3 cut(s) 232, 359, 514
BseJI GATNNNNATC 4 cut(s) 177, 302, 459, 584
BseMII CTCAG 2 cut(s) 150, 432
BseX3I CGGCCG 2 cut(s) 252, 534
BseYI CCCAGC 2 cut(s) 329, 611
Bsh1236I CGCG 2 cut(s) 171, 453
Bsh1285I CGRYCG 2 cut(s) 255, 537
BshFI GGCC 3 cut(s) 254, 358, 536
BsiEI CGRYCG 2 cut(s) 255, 537
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 4 cut(s) 151, 251, 433, 533
BslFI GGGAC 2 cut(s) 346, 628
BsmFI GGGAC 2 cut(s) 346, 628
BsmI GAATGC 2 cut(s) 189, 471
BsnI GGCC 3 cut(s) 254, 358, 536
BsoBI CYCGRG 1 cut(s) 655
Bsp143I GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
Bsp1720I GCTNAGC 2 cut(s) 159, 441
BspACI CCGC 4 cut(s) 143, 248, 425, 530
BspANI GGCC 3 cut(s) 254, 358, 536
BspCNI CTCAG 2 cut(s) 151, 433
BspFNI CGCG 2 cut(s) 171, 453
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 4 cut(s) 167, 287, 449, 569
BsrFI RCCGGY 2 cut(s) 250, 532
BssAI RCCGGY 2 cut(s) 250, 532
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
Bst4CI ACNGT 4 cut(s) 103, 274, 385, 556
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 252, 534
BstDEI CTNAG 2 cut(s) 159, 441
BstF5I GGATG 3 cut(s) 232, 359, 514
BstFNI CGCG 2 cut(s) 171, 453
BstHHI GCGC 2 cut(s) 171, 453
BstKTI GATC 9 cut(s) 64, 175, 234, 282, 306, 457, 516, 564, 588
BstMBI GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
BstMCI CGRYCG 2 cut(s) 255, 537
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 2 cut(s) 171, 453
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BstZI CGGCCG 2 cut(s) 252, 534
BsuRI GGCC 3 cut(s) 254, 358, 536
BtsCI GGATG 3 cut(s) 232, 359, 514
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 2 cut(s) 252, 534
CfoI GCGC 2 cut(s) 171, 453
Cfr10I RCCGGY 2 cut(s) 250, 532
Csp6I GTAC 9 cut(s) 122, 131, 197, 347, 404, 413, 479, 629, 635
CviAII CATG 2 cut(s) 125, 407
CviQI GTAC 9 cut(s) 122, 131, 197, 347, 404, 413, 479, 629, 635
DdeI CTNAG 2 cut(s) 159, 441
DpnI GATC 9 cut(s) 63, 174, 233, 281, 305, 456, 515, 563, 587
DpnII GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
EaeI YGGCCR 3 cut(s) 252, 356, 534
EagI CGGCCG 2 cut(s) 252, 534
EclXI CGGCCG 2 cut(s) 252, 534
Eco52I CGGCCG 2 cut(s) 252, 534
Eco57I CTGAAG 2 cut(s) 203, 485
Eco88I CYCGRG 1 cut(s) 655
FaeI CATG 2 cut(s) 128, 410
FaiI YATR 3 cut(s) 24, 126, 408
FaqI GGGAC 2 cut(s) 346, 628
FatI CATG 2 cut(s) 124, 406
Fnu4HI GCNGC 4 cut(s) 143, 248, 425, 530
FokI GGATG 3 cut(s) 239, 366, 521
Fsp4HI GCNGC 4 cut(s) 143, 248, 425, 530
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 170, 452
GluI GCNGC 4 cut(s) 143, 248, 425, 530
GsaI CCCAGC 2 cut(s) 333, 615
HaeIII GGCC 3 cut(s) 254, 358, 536
HapII CCGG 4 cut(s) 151, 251, 433, 533
HhaI GCGC 2 cut(s) 171, 453
Hin1II CATG 2 cut(s) 128, 410
Hin6I GCGC 2 cut(s) 169, 451
HinP1I GCGC 2 cut(s) 169, 451
HinfI GANTC 2 cut(s) 79, 361
HpaII CCGG 4 cut(s) 151, 251, 433, 533
HphI GGTGA 3 cut(s) 140, 262, 422
Hpy166II GTNNAC 2 cut(s) 131, 413
Hpy188I TCNGA 2 cut(s) 183, 465
Hpy188III TCNNGA 3 cut(s) 59, 312, 594
Hpy8I GTNNAC 2 cut(s) 131, 413
Hpy99I CGWCG 5 cut(s) 87, 90, 224, 369, 506
HpyAV CCTTC 3 cut(s) 40, 178, 460
HpyCH4III ACNGT 4 cut(s) 103, 274, 385, 556
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 159, 441
Hsp92II CATG 2 cut(s) 128, 410
HspAI GCGC 2 cut(s) 169, 451
KroI GCCGGC 2 cut(s) 250, 532
KroNI GCCGGC 2 cut(s) 252, 534
Kzo9I GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
LweI GCATC 2 cut(s) 154, 436
MaeI CTAG 1 cut(s) 59
MalI GATC 9 cut(s) 63, 174, 233, 281, 305, 456, 515, 563, 587
MboI GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 61
MnlI CCTC 1 cut(s) 664
MroNI GCCGGC 2 cut(s) 250, 532
MroXI GAANNNNTTC 1 cut(s) 12
MspI CCGG 4 cut(s) 151, 251, 433, 533
Mva1269I GAATGC 2 cut(s) 189, 471
MvnI CGCG 2 cut(s) 171, 453
MwoI GCNNNNNNNGC 1 cut(s) 73
NaeI GCCGGC 2 cut(s) 252, 534
NdeII GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
NgoMIV GCCGGC 2 cut(s) 250, 532
NlaIII CATG 2 cut(s) 128, 410
PctI GAATGC 2 cut(s) 189, 471
PdiI GCCGGC 2 cut(s) 252, 534
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 79, 361
PkrI GCNGC 4 cut(s) 144, 249, 426, 531
PspFI CCCAGC 2 cut(s) 329, 611
PstI CTGCAG 1 cut(s) 69
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 9 cut(s) 123, 132, 198, 348, 405, 414, 480, 630, 636
RsaNI GTAC 9 cut(s) 122, 131, 197, 347, 404, 413, 479, 629, 635
SatI GCNGC 4 cut(s) 143, 248, 425, 530
Sau3AI GATC 9 cut(s) 61, 172, 231, 279, 303, 454, 513, 561, 585
SetI ASST 8 cut(s) 160, 165, 198, 296, 442, 447, 480, 578
SfaNI GCATC 2 cut(s) 154, 436
SfcI CTRYAG 1 cut(s) 65
SsiI CCGC 4 cut(s) 143, 248, 425, 530
SspMI CTAG 1 cut(s) 59
TaaI ACNGT 4 cut(s) 103, 274, 385, 556
TaqI TCGA 8 cut(s) 118, 240, 296, 302, 400, 522, 578, 584
TatI WGTACW 4 cut(s) 121, 130, 403, 412
TauI GCSGC 4 cut(s) 145, 250, 427, 532
TfiI GAWTC 2 cut(s) 79, 361
TscAI CASTG 1 cut(s) 559
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.