Rmu_sc0001715.1_g000007

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001715.1
OG0017464
Physical Location & Seq
Reverse (-)
13239 .. 13580
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001715.1_g000007.1.cds

Sequence Viewer

Length: 342 bp
atgagggaaaactttcttcaatataaccccttcaacccttcggagttcaaatcaaatctagatctgcaggtttctcccatcatctccctctccgtctccattcctaaacaagatctaattttttctcttcttcttctaattttcgatctctctccttttagtgttttcaatcttctgggtgactgttgcagtaaggataagattgtctcctatcacttgtcagctagggattgccgattcgtcgtcgttttggagaaaccgtgctgtattcagttcgagtacatggtgtactacgagagccgcatcaccggaaagctgagctacggcgcgatcctaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

113

Amino Acids

13.0

Weight (kDa)

5.71

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 325
AfaI GTAC 2 cut(s) 281, 290
AgsI TTSAA 4 cut(s) 20, 34, 49, 169
AluBI AGCT 3 cut(s) 224, 316, 321
AluI AGCT 3 cut(s) 224, 316, 321
Alw26I GTCTC 2 cut(s) 100, 211
AlwI GGATC 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 191, 298
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 100, 211
BfaI CTAG 2 cut(s) 59, 225
BfmI CTRYAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 2 cut(s) 61, 112
BisI GCNGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 302
BmsI GCATC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse8I GATNNNNATC 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 335
BseMII CTCAG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 100, 211
BsmBI CGTCTC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 61, 112, 145, 330
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 325
BssMI GATC 4 cut(s) 61, 112, 145, 330
Bst4CI ACNGT 2 cut(s) 185, 261
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 317
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 4 cut(s) 64, 115, 148, 333
BstMAI GTCTC 2 cut(s) 100, 211
BstMBI GATC 4 cut(s) 61, 112, 145, 330
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 1 cut(s) 329
BstX2I RGATCY 2 cut(s) 61, 112
BstYI RGATCY 2 cut(s) 61, 112
BveI ACCTGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 280, 289
CviAII CATG 1 cut(s) 283
CviJI RGCY 4 cut(s) 224, 300, 316, 321
CviKI_1 RGCY 4 cut(s) 224, 300, 316, 321
CviQI GTAC 2 cut(s) 280, 289
DdeI CTNAG 1 cut(s) 317
DpnI GATC 4 cut(s) 63, 114, 147, 332
DpnII GATC 4 cut(s) 61, 112, 145, 330
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 286
FaiI YATR 2 cut(s) 24, 284
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 59, 225
GlaI GCGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 301
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 191, 298
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 43, 341
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 2 cut(s) 245, 248
HpyAV CCTTC 2 cut(s) 40, 48
HpyCH4III ACNGT 2 cut(s) 185, 261
HpyCH4V TGCA 2 cut(s) 67, 189
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 4 cut(s) 61, 112, 145, 330
LpnPI CCDG 3 cut(s) 53, 161, 322
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 59, 225
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 63, 114, 147, 332
MboI GATC 4 cut(s) 61, 112, 145, 330
MboII GAAGA 5 cut(s) 8, 119, 122, 125, 164
MflI RGATCY 2 cut(s) 61, 112
MluCI AATT 2 cut(s) 117, 138
MnlI CCTC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 12
MspI CCGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 329
NdeII GATC 4 cut(s) 61, 112, 145, 330
NlaIII CATG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 61, 112
RsaI GTAC 2 cut(s) 281, 290
RsaNI GTAC 2 cut(s) 280, 289
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 4 cut(s) 61, 112, 145, 330
SetI ASST 4 cut(s) 72, 226, 318, 323
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 117, 138
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 59, 225
TaaI ACNGT 2 cut(s) 185, 261
TaqI TCGA 2 cut(s) 144, 276
TasI AATT 2 cut(s) 117, 138
TatI WGTACW 2 cut(s) 279, 288
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 1 cut(s) 237
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 59, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.