Rh6CG505200

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017464
Physical Location & Seq
Forward (+)
66685836 .. 66691576
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG505200.1

Sequence Viewer

Length: 588 bp
ATGCTTGATGCATCCTTTTCTATCCGAAGTAAGGATAAGATCGTCTCCCATCACTTGTCAGCCAGGGATGGCCGATTCGTCGTCGTTTTGGAGAAACCGTGCTATATTCAGTTCGAGTACTTGGTGTACTACGAGACCCGCATCACCGGAAAGCTGAGCTACGGCGCGATCACGGATCTGAAGGGCATTCAGGTACAAAGATTGTTCTTTTGGTTCGACGTGGATAAGATCAGGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACCGTTGGGATCATGAAGAAAAGCTCGATGTCGATCAGTTCCAGAATGTTCATTCTTGCCGGGACGGGCTTTCGGAAACAAAGGGAGGTGGAATCAGAAAGGATAGAGAAGATGCCGGAGGAACATGCAGCCGTGAACCTGCTTTCTAACTGTGCTCGAGGCTCGACATGGAGACATAATCTTCTATCGTATCACAAGAAAATGGAGAGAGAAATGGGGAGAAAGTGGGTTACTGTGAAGTTGACGTGTCAGTCGGGGCGTGGCGGTAAAGGTACCACGTGGACGGCAGGCATGGCTCCCCAGACCCCATCCCTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

195

Amino Acids

22.3

Weight (kDa)

9.71

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 13 - 97 8.6e-21 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 539
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 139, 245, 531
AclWI GGATC 2 cut(s) 183, 284
AcoI YGGCCR 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 200
AcvI CACGTG 1 cut(s) 546
AfaI GTAC 4 cut(s) 119, 128, 195, 541
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 512
AjiI CACGTC 2 cut(s) 220, 513
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 3 cut(s) 154, 159, 291
AluI AGCT 3 cut(s) 154, 159, 291
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 49, 128, 433
AlwI GGATC 2 cut(s) 183, 284
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 539
AspLEI GCGC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 136, 259
AvaI CYCGRG 1 cut(s) 423
BanI GGYRCC 1 cut(s) 539
BbrPI CACGTG 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 407
BccI CCATC 3 cut(s) 57, 62, 583
BceAI ACGGC 4 cut(s) 178, 232, 383, 567
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 49, 128, 433
BfaI CTAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 2 cut(s) 245, 396
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 2 cut(s) 246, 397
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 64, 328
BmeT110I CYCGRG 1 cut(s) 423
BmgBI CACGTC 2 cut(s) 220, 513
BmiI GGNNCC 2 cut(s) 541, 564
BmrFI CCNGG 2 cut(s) 64, 328
BmsI GCATC 3 cut(s) 20, 150, 369
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 328
BsaAI YACGTR 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 3 cut(s) 11, 73, 575
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 3 cut(s) 147, 327, 383
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 3 cut(s) 49, 128, 433
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 6 cut(s) 39, 168, 175, 228, 276, 300
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 3 cut(s) 139, 245, 531
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 541, 564
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 2 cut(s) 183, 284
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 6 cut(s) 39, 168, 175, 228, 276, 300
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 4 cut(s) 99, 271, 419, 502
BstBAI YACGTR 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 11, 73, 575
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 6 cut(s) 42, 171, 178, 231, 279, 303
BstMAI GTCTC 3 cut(s) 49, 128, 433
BstMBI GATC 6 cut(s) 39, 168, 175, 228, 276, 300
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 62, 326
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 72
BtrI CACGTC 2 cut(s) 220, 513
BtsCI GGATG 3 cut(s) 11, 73, 575
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 556
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 4 cut(s) 118, 127, 194, 540
CviAII CATG 4 cut(s) 280, 392, 435, 559
CviQI GTAC 4 cut(s) 118, 127, 194, 540
DdeI CTNAG 1 cut(s) 155
DpnI GATC 6 cut(s) 41, 170, 177, 230, 278, 302
DpnII GATC 6 cut(s) 39, 168, 175, 228, 276, 300
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 200
Eco72I CACGTG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 4 cut(s) 283, 395, 438, 562
FaiI YATR 6 cut(s) 105, 281, 393, 436, 444, 560
FaqI GGGAC 1 cut(s) 343
FatI CATG 4 cut(s) 279, 391, 434, 558
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 245, 396
FokI GGATG 2 cut(s) 80, 562
Fsp4HI GCNGC 2 cut(s) 245, 396
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 245, 396
HaeIII GGCC 1 cut(s) 72
HapII CCGG 3 cut(s) 147, 327, 383
HhaI GCGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 283, 395, 438, 562
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 2 cut(s) 75, 359
HpaII CCGG 3 cut(s) 147, 327, 383
HphI GGTGA 2 cut(s) 136, 259
Hpy166II GTNNAC 4 cut(s) 127, 403, 510, 549
Hpy188I TCNGA 5 cut(s) 26, 180, 253, 342, 364
Hpy188III TCNNGA 2 cut(s) 280, 309
Hpy8I GTNNAC 4 cut(s) 127, 403, 510, 549
Hpy99I CGWCG 3 cut(s) 83, 86, 221
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 4 cut(s) 99, 271, 419, 502
HpyCH4IV ACGT 3 cut(s) 219, 512, 545
HpyCH4V TGCA 2 cut(s) 11, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 3 cut(s) 219, 512, 545
Hsp92II CATG 4 cut(s) 283, 395, 438, 562
HspAI GCGC 1 cut(s) 165
KpnI GGTACC 1 cut(s) 543
Kzo9I GATC 6 cut(s) 39, 168, 175, 228, 276, 300
LmnI GCTCC 1 cut(s) 568
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 3 cut(s) 20, 150, 369
MaeI CTAG 1 cut(s) 581
MaeII ACGT 3 cut(s) 219, 512, 545
MaeIII GTNAC 1 cut(s) 496
MalI GATC 6 cut(s) 41, 170, 177, 230, 278, 302
MboI GATC 6 cut(s) 39, 168, 175, 228, 276, 300
MboII GAAGA 3 cut(s) 295, 388, 440
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 424
MnlI CCTC 3 cut(s) 346, 379, 419
Mph1103I ATGCAT 1 cut(s) 13
MspI CCGG 3 cut(s) 147, 327, 383
MspR9I CCNGG 2 cut(s) 64, 328
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 560
NciI CCSGG 1 cut(s) 328
NdeII GATC 6 cut(s) 39, 168, 175, 228, 276, 300
NlaIII CATG 4 cut(s) 283, 395, 438, 562
NlaIV GGNNCC 2 cut(s) 541, 564
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 423
PagI TCATGA 1 cut(s) 279
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 75, 359
PkrI GCNGC 2 cut(s) 246, 397
PmaCI CACGTG 1 cut(s) 546
PmlI CACGTG 1 cut(s) 546
Ppu21I YACGTR 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 62
PspCI CACGTG 1 cut(s) 546
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 541, 564
PspXI VCTCGAGB 1 cut(s) 423
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 4 cut(s) 119, 128, 195, 541
RsaNI GTAC 4 cut(s) 118, 127, 194, 540
SatI GCNGC 2 cut(s) 245, 396
Sau3AI GATC 6 cut(s) 39, 168, 175, 228, 276, 300
ScaI AGTACT 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 64, 328
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 3 cut(s) 20, 150, 369
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
SsiI CCGC 3 cut(s) 139, 245, 531
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 62, 326
TaaI ACNGT 4 cut(s) 99, 271, 419, 502
TaiI ACGT 3 cut(s) 222, 515, 548
TaqI TCGA 7 cut(s) 114, 216, 237, 293, 299, 424, 431
TatI WGTACW 2 cut(s) 117, 126
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 2 cut(s) 75, 359
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 296, 307
TspGWI ACGGA 1 cut(s) 188
XceI RCATGY 1 cut(s) 395
XhoI CTCGAG 1 cut(s) 423
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.