Rmu_sc0006269.1_g000033

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006269.1
OG0017464
Physical Location & Seq
Reverse (-)
145032 .. 145379
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006269.1_g000033.1.cds

Sequence Viewer

Length: 348 bp
atgagggaaaactttcttcaatataaccccttcaaccgttcggagttcaaaccaaatctagatttgcaggtttctcccatcatctccctctccatctccgtctccgtccccattcctaaacaagatcttcttttttctcctcttcttctaattttcgatctctctcctcttagtgttttcaatcttctgggtgactgtttcagtaaggataagatcgtctcccatcacttgtcagctagggatggccgattcgtcgtcgttttggagaaatcgtgctatattcagttcgactacttggtgtactacgagagccgcatcaccggaaagctgagctacgccgcgatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

6.71

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 313, 339
AcoI YGGCCR 1 cut(s) 244
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 4 cut(s) 20, 34, 49, 181
AluBI AGCT 3 cut(s) 236, 328, 333
AluI AGCT 3 cut(s) 236, 328, 333
Alw26I GTCTC 2 cut(s) 106, 223
AoxI GGCC 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 203, 310
BccI CCATC 4 cut(s) 86, 101, 231, 236
BcoDI GTCTC 2 cut(s) 106, 223
BfaI CTAG 2 cut(s) 59, 237
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 313, 339
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 2 cut(s) 314, 340
BmsI GCATC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 129, 156
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 106, 223
BsmBI CGTCTC 2 cut(s) 106, 223
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 4 cut(s) 124, 157, 213, 342
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 2 cut(s) 313, 339
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 58
BssMI GATC 4 cut(s) 124, 157, 213, 342
Bst4CI ACNGT 2 cut(s) 38, 197
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 170, 329
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 4 cut(s) 127, 160, 216, 345
BstMAI GTCTC 2 cut(s) 106, 223
BstMBI GATC 4 cut(s) 124, 157, 213, 342
BstUI CGCG 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 301
CviJI RGCY 5 cut(s) 236, 246, 312, 328, 333
CviKI_1 RGCY 5 cut(s) 236, 246, 312, 328, 333
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 170, 329
DpnI GATC 4 cut(s) 126, 159, 215, 344
DpnII GATC 4 cut(s) 124, 157, 213, 342
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Esp3I CGTCTC 2 cut(s) 106, 223
FaiI YATR 2 cut(s) 24, 279
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 313, 339
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 313, 339
FspBI CTAG 2 cut(s) 59, 237
GluI GCNGC 2 cut(s) 313, 339
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 321
HinfI GANTC 1 cut(s) 249
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 203, 310
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 43, 347
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 257, 260
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 38, 197
HpyCH4V TGCA 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 170, 329
Kzo9I GATC 4 cut(s) 124, 157, 213, 342
LpnPI CCDG 3 cut(s) 53, 173, 334
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 59, 237
MaeIII GTNAC 1 cut(s) 191
MalI GATC 4 cut(s) 126, 159, 215, 344
MboI GATC 4 cut(s) 124, 157, 213, 342
MboII GAAGA 5 cut(s) 8, 119, 134, 137, 176
MflI RGATCY 1 cut(s) 124
MluCI AATT 1 cut(s) 150
MnlI CCTC 3 cut(s) 98, 150, 177
MroXI GAANNNNTTC 1 cut(s) 12
MspI CCGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 341
NdeII GATC 4 cut(s) 124, 157, 213, 342
NmuCI GTSAC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 314, 340
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 2 cut(s) 313, 339
Sau3AI GATC 4 cut(s) 124, 157, 213, 342
SetI ASST 4 cut(s) 72, 238, 330, 335
SfaNI GCATC 1 cut(s) 324
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 313, 339
SspMI CTAG 2 cut(s) 59, 237
TaaI ACNGT 2 cut(s) 38, 197
TaqI TCGA 2 cut(s) 156, 288
TasI AATT 1 cut(s) 150
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 315, 341
TfiI GAWTC 1 cut(s) 249
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 2 cut(s) 88, 94
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 59, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.