Rmu_sc0010103.1_g000008

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010103.1
OG0017464
Physical Location & Seq
Forward (+)
26555 .. 28359
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010103.1_g000008.1.cds

Sequence Viewer

Length: 828 bp
atgagggaaaactttcttcaatataaccccttcaaccgttcggagttcaaaccaaatctagatttgcaggtttctcccatcatctccctctccatctccgtctccgtctccattcctaaacaagatcttcttttttctcttcttcttctaattttcgatttctctcctcttagtgttttcaatcttctgggtgactgtttcagtaaggataagatcgtctcccatcacttgtcatctagggatggccgattcgtcgtcgttttggagaaatcgtgctatattcagttctataaggataagatcatctcccatcacttgtcatctagggatggccgattcgtcgtcgttttggagaaatcgtgctatattcagttcgagtacttggtgtactacgagagccgcatcaccggaaagctgagctacgtaaggataagatcgtctcccatcacttgtcatctagggatggccgattcggtcgatttgccgccggccgatagtatttacttcaccgttgggatcatcaacaaaagctcgatgtcgatcagttccagaatgttcattcttgtcgggatgggctttcgggtacggaataaacggaaagctgagctacggcacgatcccaatctgaagggcattcaggtacaaagattgttcttttggttcgtcgtggatgagatcagggtcgatttgccgccggccaatagtaattacttcaccgttgggatcatcaacaaaagctcgatgtcgatcagttccagaatgttcattcttgtcgggacgggctttcgggtacgggtacgggttcgatttcttgccttgagtcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

275

Amino Acids

31.66

Weight (kDa)

9.81

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AciI CCGC 3 cut(s) 400, 485, 692
AclWI GGATC 3 cut(s) 524, 611, 731
AcoI YGGCCR 5 cut(s) 244, 331, 465, 489, 696
AcuI CTGAAG 1 cut(s) 647
AfaI GTAC 6 cut(s) 380, 389, 585, 642, 792, 798
AgsI TTSAA 4 cut(s) 20, 34, 49, 181
AluBI AGCT 6 cut(s) 415, 420, 531, 602, 607, 738
AluI AGCT 6 cut(s) 415, 420, 531, 602, 607, 738
Alw26I GTCTC 4 cut(s) 106, 112, 223, 444
AlwI GGATC 3 cut(s) 524, 611, 731
AoxI GGCC 5 cut(s) 244, 331, 465, 489, 696
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 203, 397, 499, 706
BccI CCATC 9 cut(s) 86, 101, 231, 236, 318, 323, 452, 457, 565
BceAI ACGGC 1 cut(s) 626
BcoDI GTCTC 4 cut(s) 106, 112, 223, 444
BfaI CTAG 4 cut(s) 59, 237, 324, 458
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 400, 485, 692
BlpI GCTNAGC 2 cut(s) 416, 603
BlsI GCNGC 3 cut(s) 401, 486, 693
BmcAI AGTACT 1 cut(s) 380
BmsI GCATC 1 cut(s) 411
Bpu1102I GCTNAGC 2 cut(s) 416, 603
BsaAI YACGTR 1 cut(s) 424
BsaBI GATNNNNATC 3 cut(s) 539, 621, 746
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 344, 374
Bse118I RCCGGY 2 cut(s) 487, 694
Bse8I GATNNNNATC 3 cut(s) 539, 621, 746
BseGI GGATG 5 cut(s) 247, 334, 468, 576, 676
BseJI GATNNNNATC 3 cut(s) 539, 621, 746
BseMII CTCAG 2 cut(s) 407, 594
BseRI GAGGAG 1 cut(s) 156
BseX3I CGGCCG 1 cut(s) 489
Bsh1285I CGRYCG 2 cut(s) 477, 492
BshFI GGCC 5 cut(s) 246, 333, 467, 491, 698
BsiEI CGRYCG 2 cut(s) 477, 492
BsiSI CCGG 3 cut(s) 408, 488, 695
BslFI GGGAC 1 cut(s) 790
BsmAI GTCTC 4 cut(s) 106, 112, 223, 444
BsmBI CGTCTC 4 cut(s) 106, 112, 223, 444
BsmFI GGGAC 1 cut(s) 790
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 5 cut(s) 246, 333, 467, 491, 698
Bsp1720I GCTNAGC 2 cut(s) 416, 603
BspACI CCGC 3 cut(s) 400, 485, 692
BspANI GGCC 5 cut(s) 246, 333, 467, 491, 698
BspCNI CTCAG 2 cut(s) 408, 595
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 3 cut(s) 524, 611, 731
BsrFI RCCGGY 2 cut(s) 487, 694
BssAI RCCGGY 2 cut(s) 487, 694
Bst4CI ACNGT 4 cut(s) 38, 197, 511, 718
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 489, 696
BstDEI CTNAG 3 cut(s) 170, 416, 603
BstF5I GGATG 5 cut(s) 247, 334, 468, 576, 676
BstMAI GTCTC 4 cut(s) 106, 112, 223, 444
BstMCI CGRYCG 2 cut(s) 477, 492
BstSNI TACGTA 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 5 cut(s) 246, 333, 467, 491, 698
BtsCI GGATG 5 cut(s) 247, 334, 468, 576, 676
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 489, 696
Cfr10I RCCGGY 2 cut(s) 487, 694
Csp6I GTAC 6 cut(s) 379, 388, 584, 641, 791, 797
CviQI GTAC 6 cut(s) 379, 388, 584, 641, 791, 797
DdeI CTNAG 3 cut(s) 170, 416, 603
EaeI YGGCCR 5 cut(s) 244, 331, 465, 489, 696
EagI CGGCCG 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 489
Eco105I TACGTA 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 647
Esp3I CGTCTC 4 cut(s) 106, 112, 223, 444
FaiI YATR 4 cut(s) 24, 279, 291, 366
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 790
Fnu4HI GCNGC 3 cut(s) 400, 485, 692
FokI GGATG 5 cut(s) 254, 341, 475, 583, 683
Fsp4HI GCNGC 3 cut(s) 400, 485, 692
FspBI CTAG 4 cut(s) 59, 237, 324, 458
GluI GCNGC 3 cut(s) 400, 485, 692
HaeIII GGCC 5 cut(s) 246, 333, 467, 491, 698
HapII CCGG 3 cut(s) 408, 488, 695
HinfI GANTC 4 cut(s) 249, 336, 470, 820
HpaII CCGG 3 cut(s) 408, 488, 695
HphI GGTGA 4 cut(s) 203, 397, 499, 706
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 43, 627
Hpy188III TCNNGA 5 cut(s) 59, 549, 568, 756, 775
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 5 cut(s) 257, 260, 344, 347, 668
HpyAV CCTTC 2 cut(s) 40, 622
HpyCH4III ACNGT 4 cut(s) 38, 197, 511, 718
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 67
HpyF3I CTNAG 3 cut(s) 170, 416, 603
HpySE526I ACGT 1 cut(s) 423
KroI GCCGGC 2 cut(s) 487, 694
KroNI GCCGGC 2 cut(s) 489, 696
LpnPI CCDG 9 cut(s) 53, 173, 421, 501, 562, 623, 664, 708, 769
LweI GCATC 1 cut(s) 411
MaeI CTAG 4 cut(s) 59, 237, 324, 458
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 6 cut(s) 8, 119, 131, 134, 137, 176
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 150, 706
MnlI CCTC 2 cut(s) 98, 177
MroNI GCCGGC 2 cut(s) 487, 694
MroXI GAANNNNTTC 1 cut(s) 12
MspI CCGG 3 cut(s) 408, 488, 695
Mva1269I GAATGC 1 cut(s) 633
NaeI GCCGGC 2 cut(s) 489, 696
NgoMIV GCCGGC 2 cut(s) 487, 694
NmuCI GTSAC 1 cut(s) 191
PctI GAATGC 1 cut(s) 633
PdiI GCCGGC 2 cut(s) 489, 696
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 249, 336, 470
PkrI GCNGC 3 cut(s) 401, 486, 693
Ppu21I YACGTR 1 cut(s) 424
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 6 cut(s) 380, 389, 585, 642, 792, 798
RsaNI GTAC 6 cut(s) 379, 388, 584, 641, 791, 797
SatI GCNGC 3 cut(s) 400, 485, 692
ScaI AGTACT 1 cut(s) 380
SetI ASST 9 cut(s) 72, 417, 422, 426, 533, 604, 609, 642, 740
SfaNI GCATC 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
SnaBI TACGTA 1 cut(s) 424
Sse9I AATT 2 cut(s) 150, 706
SsiI CCGC 3 cut(s) 400, 485, 692
SspMI CTAG 4 cut(s) 59, 237, 324, 458
TaaI ACNGT 4 cut(s) 38, 197, 511, 718
TaiI ACGT 1 cut(s) 426
TaqI TCGA 9 cut(s) 156, 375, 477, 533, 539, 684, 740, 746, 805
TaqII GACCGA 1 cut(s) 463
TasI AATT 2 cut(s) 150, 706
TatI WGTACW 2 cut(s) 378, 387
TauI GCSGC 3 cut(s) 402, 487, 694
TfiI GAWTC 3 cut(s) 249, 336, 470
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 547, 754
TspGWI ACGGA 4 cut(s) 88, 94, 601, 610
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 4 cut(s) 59, 237, 324, 458
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.